메뉴 건너뛰기




Volumn 9, Issue 1, 2014, Pages 219-233

Cooperativity, specificity, and evolutionary stability of polycomb targeting in Drosophila

Author keywords

[No Author keywords available]

Indexed keywords

CIS ACTING ELEMENT; DNA BINDING PROTEIN; PLEIOHOMEOTIC PROTEIN; POLYCOMB GROUP PROTEIN; TRANSCRIPTION FACTOR; UNCLASSIFIED DRUG; DROSOPHILA PROTEIN; PROTEIN BINDING;

EID: 84907985757     PISSN: None     EISSN: 22111247     Source Type: Journal    
DOI: 10.1016/j.celrep.2014.08.072     Document Type: Article
Times cited : (64)

References (42)
  • 1
    • 84904248648 scopus 로고    scopus 로고
    • Evolution of H3K27me3-marked chromatin is linked to gene expression evolution and to patterns of gene duplication and diversification
    • Arthur R.K., Ma L., Slattery M., Spokony R.F., Ostapenko A., Nègre N., White K.P. Evolution of H3K27me3-marked chromatin is linked to gene expression evolution and to patterns of gene duplication and diversification. Genome Res. 2014, 24:1115-1124.
    • (2014) Genome Res. , vol.24 , pp. 1115-1124
    • Arthur, R.K.1    Ma, L.2    Slattery, M.3    Spokony, R.F.4    Ostapenko, A.5    Nègre, N.6    White, K.P.7
  • 3
    • 80054080265 scopus 로고    scopus 로고
    • Polycomb group proteins: repression in 3D
    • Bantignies F., Cavalli G. Polycomb group proteins: repression in 3D. Trends Genet. 2011, 27:454-464.
    • (2011) Trends Genet. , vol.27 , pp. 454-464
    • Bantignies, F.1    Cavalli, G.2
  • 6
    • 77950566643 scopus 로고    scopus 로고
    • Binding site turnover produces pervasive quantitative changes in transcription factor binding between closely related Drosophila species
    • Bradley R.K., Li X.Y., Trapnell C., Davidson S., Pachter L., Chu H.C., Tonkin L.A., Biggin M.D., Eisen M.B. Binding site turnover produces pervasive quantitative changes in transcription factor binding between closely related Drosophila species. PLoS Biol. 2010, 8:e1000343.
    • (2010) PLoS Biol. , vol.8 , pp. e1000343
    • Bradley, R.K.1    Li, X.Y.2    Trapnell, C.3    Davidson, S.4    Pachter, L.5    Chu, H.C.6    Tonkin, L.A.7    Biggin, M.D.8    Eisen, M.B.9
  • 7
    • 0032087892 scopus 로고    scopus 로고
    • The Drosophila Polycomb group gene pleiohomeotic encodes a DNA binding protein with homology to the transcription factor YY1
    • Brown J.L., Mucci D., Whiteley M., Dirksen M.L., Kassis J.A. The Drosophila Polycomb group gene pleiohomeotic encodes a DNA binding protein with homology to the transcription factor YY1. Mol. Cell 1998, 1:1057-1064.
    • (1998) Mol. Cell , vol.1 , pp. 1057-1064
    • Brown, J.L.1    Mucci, D.2    Whiteley, M.3    Dirksen, M.L.4    Kassis, J.A.5
  • 8
    • 84863574768 scopus 로고    scopus 로고
    • Inferring divergence of context-dependent substitution rates in Drosophila genomes with applications to comparative genomics
    • Chachick R., Tanay A. Inferring divergence of context-dependent substitution rates in Drosophila genomes with applications to comparative genomics. Mol. Biol. Evol. 2012, 29:1769-1780.
    • (2012) Mol. Biol. Evol. , vol.29 , pp. 1769-1780
    • Chachick, R.1    Tanay, A.2
  • 9
    • 84892474589 scopus 로고    scopus 로고
    • Polycomb silencing: from linear chromatin domains to 3D chromosome folding
    • Cheutin T., Cavalli G. Polycomb silencing: from linear chromatin domains to 3D chromosome folding. Curr. Opin. Genet. Dev. 2014, 25:30-37.
    • (2014) Curr. Opin. Genet. Dev. , vol.25 , pp. 30-37
    • Cheutin, T.1    Cavalli, G.2
  • 13
    • 84861095603 scopus 로고    scopus 로고
    • Topological domains in mammalian genomes identified by analysis of chromatin interactions
    • Dixon J.R., Selvaraj S., Yue F., Kim A., Li Y., Shen Y., Hu M., Liu J.S., Ren B. Topological domains in mammalian genomes identified by analysis of chromatin interactions. Nature 2012, 485:376-380.
    • (2012) Nature , vol.485 , pp. 376-380
    • Dixon, J.R.1    Selvaraj, S.2    Yue, F.3    Kim, A.4    Li, Y.5    Shen, Y.6    Hu, M.7    Liu, J.S.8    Ren, B.9
  • 14
    • 0020378065 scopus 로고
    • Polycomblike: a gene that appears to be required for the normal expression of the bithorax and antennapedia gene complexes of Drosophila melanogaster
    • Duncan I.M. Polycomblike: a gene that appears to be required for the normal expression of the bithorax and antennapedia gene complexes of Drosophila melanogaster. Genetics 1982, 102:49-70.
    • (1982) Genetics , vol.102 , pp. 49-70
    • Duncan, I.M.1
  • 15
    • 79551599186 scopus 로고    scopus 로고
    • Loss of the Polycomb group gene polyhomeotic induces non-autonomous cell overproliferation
    • Feng S., Huang J., Wang J. Loss of the Polycomb group gene polyhomeotic induces non-autonomous cell overproliferation. EMBO Rep. 2011, 12:157-163.
    • (2011) EMBO Rep. , vol.12 , pp. 157-163
    • Feng, S.1    Huang, J.2    Wang, J.3
  • 16
    • 33747826650 scopus 로고    scopus 로고
    • JPREdictor: a versatile tool for the prediction of cis-regulatory elements
    • Fiedler T., Rehmsmeier M. jPREdictor: a versatile tool for the prediction of cis-regulatory elements. Nucleic Acids Res. 2006, 34:W546-W550.
    • (2006) Nucleic Acids Res. , vol.34 , pp. W546-W550
    • Fiedler, T.1    Rehmsmeier, M.2
  • 17
    • 60849109995 scopus 로고    scopus 로고
    • The DNA-binding Polycomb-group protein Pleiohomeotic maintains both active and repressed transcriptional states through a single site
    • Fujioka M., Yusibova G.L., Zhou J., Jaynes J.B. The DNA-binding Polycomb-group protein Pleiohomeotic maintains both active and repressed transcriptional states through a single site. Development 2008, 135:4131-4139.
    • (2008) Development , vol.135 , pp. 4131-4139
    • Fujioka, M.1    Yusibova, G.L.2    Zhou, J.3    Jaynes, J.B.4
  • 18
    • 54949151898 scopus 로고    scopus 로고
    • Evolutionary plasticity of polycomb/trithorax response elements in Drosophila species
    • Hauenschild A., Ringrose L., Altmutter C., Paro R., Rehmsmeier M. Evolutionary plasticity of polycomb/trithorax response elements in Drosophila species. PLoS Biol. 2008, 6:e261.
    • (2008) PLoS Biol. , vol.6 , pp. e261
    • Hauenschild, A.1    Ringrose, L.2    Altmutter, C.3    Paro, R.4    Rehmsmeier, M.5
  • 19
    • 79955471381 scopus 로고    scopus 로고
    • High conservation of transcription factor binding and evidence for combinatorial regulation across six Drosophila species
    • He Q., Bardet A.F., Patton B., Purvis J., Johnston J., Paulson A., Gogol M., Stark A., Zeitlinger J. High conservation of transcription factor binding and evidence for combinatorial regulation across six Drosophila species. Nat. Genet. 2011, 43:414-420.
    • (2011) Nat. Genet. , vol.43 , pp. 414-420
    • He, Q.1    Bardet, A.F.2    Patton, B.3    Purvis, J.4    Johnston, J.5    Paulson, A.6    Gogol, M.7    Stark, A.8    Zeitlinger, J.9
  • 20
    • 84856704764 scopus 로고    scopus 로고
    • A transcription factor collective defines cardiac cell fate and reflects lineage history
    • Junion G., Spivakov M., Girardot C., Braun M., Gustafson E.H., Birney E., Furlong E.E. A transcription factor collective defines cardiac cell fate and reflects lineage history. Cell 2012, 148:473-486.
    • (2012) Cell , vol.148 , pp. 473-486
    • Junion, G.1    Spivakov, M.2    Girardot, C.3    Braun, M.4    Gustafson, E.H.5    Birney, E.6    Furlong, E.E.7
  • 21
    • 84905457337 scopus 로고    scopus 로고
    • Combinatorial interactions are required for the efficient recruitment of pho repressive complex (PhoRC) to polycomb response elements
    • Kahn T.G., Stenberg P., Pirrotta V., Schwartz Y.B. Combinatorial interactions are required for the efficient recruitment of pho repressive complex (PhoRC) to polycomb response elements. PLoS Genet. 2014, 10:e1004495.
    • (2014) PLoS Genet. , vol.10 , pp. e1004495
    • Kahn, T.G.1    Stenberg, P.2    Pirrotta, V.3    Schwartz, Y.B.4
  • 22
    • 84873910684 scopus 로고    scopus 로고
    • Polycomb group response elements in Drosophila and vertebrates
    • Kassis J.A., Brown J.L. Polycomb group response elements in Drosophila and vertebrates. Adv. Genet. 2013, 81:83-118.
    • (2013) Adv. Genet. , vol.81 , pp. 83-118
    • Kassis, J.A.1    Brown, J.L.2
  • 23
    • 84878518413 scopus 로고    scopus 로고
    • Drosophila functional elements are embedded in structurally constrained sequences
    • Kenigsberg E., Tanay A. Drosophila functional elements are embedded in structurally constrained sequences. PLoS Genet. 2013, 9:e1003512.
    • (2013) PLoS Genet. , vol.9 , pp. e1003512
    • Kenigsberg, E.1    Tanay, A.2
  • 24
    • 33745151459 scopus 로고    scopus 로고
    • A Polycomb group protein complex with sequence-specific DNA-binding and selective methyl-lysine-binding activities
    • Klymenko T., Papp B., Fischle W., Köcher T., Schelder M., Fritsch C., Wild B., Wilm M., Müller J. A Polycomb group protein complex with sequence-specific DNA-binding and selective methyl-lysine-binding activities. Genes Dev. 2006, 20:1110-1122.
    • (2006) Genes Dev. , vol.20 , pp. 1110-1122
    • Klymenko, T.1    Papp, B.2    Fischle, W.3    Köcher, T.4    Schelder, M.5    Fritsch, C.6    Wild, B.7    Wilm, M.8    Müller, J.9
  • 26
    • 34848825691 scopus 로고    scopus 로고
    • Polycomb response elements mediate the formation of chromosome higher-order structures in the bithorax complex
    • Lanzuolo C., Roure V., Dekker J., Bantignies F., Orlando V. Polycomb response elements mediate the formation of chromosome higher-order structures in the bithorax complex. Nat. Cell Biol. 2007, 9:1167-1174.
    • (2007) Nat. Cell Biol. , vol.9 , pp. 1167-1174
    • Lanzuolo, C.1    Roure, V.2    Dekker, J.3    Bantignies, F.4    Orlando, V.5
  • 27
    • 0022326959 scopus 로고
    • Regulation of the genes of the bithorax complex in Drosophila
    • Lewis E.B. Regulation of the genes of the bithorax complex in Drosophila. Cold Spring Harb. Symp. Quant. Biol. 1985, 50:155-164.
    • (1985) Cold Spring Harb. Symp. Quant. Biol. , vol.50 , pp. 155-164
    • Lewis, E.B.1
  • 28
    • 84874778180 scopus 로고    scopus 로고
    • PcG-mediated higher-order chromatin structures modulate replication programs at the Drosophila BX-C
    • Lo Sardo F., Lanzuolo C., Comoglio F., De Bardi M., Paro R., Orlando V. PcG-mediated higher-order chromatin structures modulate replication programs at the Drosophila BX-C. PLoS Genet. 2013, 9:e1003283.
    • (2013) PLoS Genet. , vol.9 , pp. e1003283
    • Lo Sardo, F.1    Lanzuolo, C.2    Comoglio, F.3    De Bardi, M.4    Paro, R.5    Orlando, V.6
  • 30
    • 23744459419 scopus 로고    scopus 로고
    • Synergistic recognition of an epigenetic DNA element by Pleiohomeotic and a Polycomb core complex
    • Mohd-Sarip A., Cléard F., Mishra R.K., Karch F., Verrijzer C.P. Synergistic recognition of an epigenetic DNA element by Pleiohomeotic and a Polycomb core complex. Genes Dev. 2005, 19:1755-1760.
    • (2005) Genes Dev. , vol.19 , pp. 1755-1760
    • Mohd-Sarip, A.1    Cléard, F.2    Mishra, R.K.3    Karch, F.4    Verrijzer, C.P.5
  • 31
    • 33748419671 scopus 로고    scopus 로고
    • Polycomb response elements and targeting of Polycomb group proteins in Drosophila
    • Müller J., Kassis J.A. Polycomb response elements and targeting of Polycomb group proteins in Drosophila. Curr. Opin. Genet. Dev. 2006, 16:476-484.
    • (2006) Curr. Opin. Genet. Dev. , vol.16 , pp. 476-484
    • Müller, J.1    Kassis, J.A.2
  • 35
    • 0242362735 scopus 로고    scopus 로고
    • Genome-wide prediction of Polycomb/Trithorax response elements in Drosophila melanogaster
    • Ringrose L., Rehmsmeier M., Dura J.M., Paro R. Genome-wide prediction of Polycomb/Trithorax response elements in Drosophila melanogaster. Dev. Cell 2003, 5:759-771.
    • (2003) Dev. Cell , vol.5 , pp. 759-771
    • Ringrose, L.1    Rehmsmeier, M.2    Dura, J.M.3    Paro, R.4
  • 36
    • 84899958196 scopus 로고    scopus 로고
    • The chromatin landscape and transcription factors in Tcell programming
    • Rothenberg E.V. The chromatin landscape and transcription factors in Tcell programming. Trends Immunol. 2014, 35:195-204.
    • (2014) Trends Immunol. , vol.35 , pp. 195-204
    • Rothenberg, E.V.1
  • 37
    • 70350149728 scopus 로고    scopus 로고
    • Recruitment of polycomb group complexes and their role in the dynamic regulation of cell fate choice
    • Schuettengruber B., Cavalli G. Recruitment of polycomb group complexes and their role in the dynamic regulation of cell fate choice. Development 2009, 136:3531-3542.
    • (2009) Development , vol.136 , pp. 3531-3542
    • Schuettengruber, B.1    Cavalli, G.2
  • 42
    • 84864450909 scopus 로고    scopus 로고
    • Genome-wide polycomb target gene prediction in Drosophila melanogaster
    • Zeng J., Kirk B.D., Gou Y., Wang Q., Ma J. Genome-wide polycomb target gene prediction in Drosophila melanogaster. Nucleic Acids Res. 2012, 40:5848-5863.
    • (2012) Nucleic Acids Res. , vol.40 , pp. 5848-5863
    • Zeng, J.1    Kirk, B.D.2    Gou, Y.3    Wang, Q.4    Ma, J.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.