-
1
-
-
84877088375
-
Transfer RNA post-transcriptional processing, turnover, and subcellular dynamics in the yeast Saccharomyces cerevisiae
-
PMID:23633143
-
Hopper AK. Transfer RNA post-transcriptional processing, turnover, and subcellular dynamics in the yeast Saccharomyces cerevisiae. Genetics 2013; 194:43-67; PMID:23633143; http://dx.doi.org/10.1534/genetics.112.147470
-
(2013)
Genetics
, vol.194
, pp. 43-67
-
-
Hopper, A.K.1
-
2
-
-
84870152928
-
Biosynthesis and function of posttranscriptional modifications of transfer RNAs
-
PMID:22905870
-
El Yacoubi B, Bailly M, de Crecy-Lagard V. Biosynthesis and function of posttranscriptional modifications of transfer RNAs. Ann Rev Genet 2012; 46: 69-95; PMID:22905870; http://dx.doi.org/10.1146/annurev-genet-110711-155641
-
(2012)
Ann Rev Genet
, vol.46
, pp. 69-95
-
-
El Yacoubi, B.1
Bailly, M.2
De Crecy-Lagard, V.3
-
3
-
-
18944364447
-
Trm11p and Trm112p are both required for the formation of 2-methylguanosine at position 10 in yeast tRNA
-
PMID:15899842
-
Purushothaman SK, Bujnicki JM, Grosjean H, Lapeyre B. Trm11p and Trm112p are both required for the formation of 2-methylguanosine at position 10 in yeast tRNA. Mol Cell Biol 2005; 25:4359-70; PMID:15899842; http://dx.doi.org/10.1128/MCB.25.11.4359-4370.2005
-
(2005)
Mol Cell Biol
, vol.25
, pp. 4359-4370
-
-
Purushothaman, S.K.1
Bujnicki, J.M.2
Grosjean, H.3
Lapeyre, B.4
-
4
-
-
33845988761
-
The zinc finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast
-
PMID:17008308
-
Heurgue-Hamard V, Graille M, Scrima N, Ulryck N, Champ S, van Tilbeurgh H, Buckingham RH. The zinc finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast. J Biol Chem 2006; 281:36140-8; PMID:17008308; http://dx.doi.org/10.1074/jbc.M608571200
-
(2006)
J Biol Chem
, vol.281
, pp. 36140-36148
-
-
Heurgue-Hamard, V.1
Graille, M.2
Scrima, N.3
Ulryck, N.4
Champ, S.5
Van Tilbeurgh, H.6
Buckingham, R.H.7
-
5
-
-
77953320100
-
Trm112p is a 15-kDa zinc finger protein essential for the activity of two tRNA and one protein methyltransferases in yeast
-
PMID:20400505
-
Mazauric MH, Dirick L, Purushothaman SK, Bjork GR, Lapeyre B. Trm112p is a 15-kDa zinc finger protein essential for the activity of two tRNA and one protein methyltransferases in yeast. J Biol Chem 2010; 285:18505-15; PMID:20400505; http://dx.doi.org/10.1074/jbc.M110.113100
-
(2010)
J Biol Chem
, vol.285
, pp. 18505-18515
-
-
Mazauric, M.H.1
Dirick, L.2
Purushothaman, S.K.3
Bjork, G.R.4
Lapeyre, B.5
-
6
-
-
79958119986
-
Unexpected accumulation of ncm(5)U and ncm(5)S(2) (U) in a trm9 mutant suggests an additional step in the synthesis of mcm(5)U and mcm(5)S(2)U
-
PMID:21687733
-
Chen C, Huang B, Anderson JT, Bystrom AS. Unexpected accumulation of ncm(5)U and ncm(5)S(2) (U) in a trm9 mutant suggests an additional step in the synthesis of mcm(5)U and mcm(5)S(2)U. PloS one 2011; 6:e20783; PMID:21687733; http://dx.doi.org/10.1371/journal.pone.0020783
-
(2011)
PloS One
, vol.6
, pp. e20783
-
-
Chen, C.1
Huang, B.2
Anderson, J.T.3
Bystrom, A.S.4
-
7
-
-
84864000733
-
Trm112 is required for Bud23-mediated methylation of the 18S rRNA at position G1575
-
PMID:22493060
-
Figaro S, Wacheul L, Schillewaert S, Graille M, Huvelle E, Mongeard R, Zorbas C, Lafontaine DL, Heurgue-Hamard V. Trm112 is required for Bud23-mediated methylation of the 18S rRNA at position G1575. Mol Cell Biol 2012; 32:2254-67; PMID:22493060; http://dx.doi.org/10.1128/MCB.06623-11
-
(2012)
Mol Cell Biol
, vol.32
, pp. 2254-2267
-
-
Figaro, S.1
Wacheul, L.2
Schillewaert, S.3
Graille, M.4
Huvelle, E.5
Mongeard, R.6
Zorbas, C.7
Lafontaine, D.L.8
Heurgue-Hamard, V.9
-
8
-
-
84868250838
-
The methyltransferase adaptor protein Trm112 is involved in biogenesis of both ribosomal subunits
-
PMID:22956767
-
Sardana R, Johnson AW. The methyltransferase adaptor protein Trm112 is involved in biogenesis of both ribosomal subunits. Mol Biol Cell 2012; 23:4313-22; PMID:22956767; http://dx.doi.org/10.1091/mbc.E12-05-0370
-
(2012)
Mol Biol Cell
, vol.23
, pp. 4313-4322
-
-
Sardana, R.1
Johnson, A.W.2
-
9
-
-
0037007220
-
Trm7p catalyses the formation of two 2′-O-methylriboses in yeast tRNA anticodon loop
-
PMID:11927565
-
Pintard L, Lecointe F, Bujnicki JM, Bonnerot C, Grosjean H, Lapeyre B. Trm7p catalyses the formation of two 2′-O-methylriboses in yeast tRNA anticodon loop. EMBO J 2002; 21:1811-20; PMID:11927565; http://dx.doi.org/10.1093/emboj/21.7.1811
-
(2002)
EMBO J
, vol.21
, pp. 1811-1820
-
-
Pintard, L.1
Lecointe, F.2
Bujnicki, J.M.3
Bonnerot, C.4
Grosjean, H.5
Lapeyre, B.6
-
10
-
-
84866610711
-
Yeast Trm7 interacts with distinct proteins for critical modifications of the tRNAPhe anticodon loop
-
PMID:22912484
-
Guy MP, Podyma BM, Preston MA, Shaheen HH, Krivos KL, Limbach PA, Hopper AK, Phizicky EM. Yeast Trm7 interacts with distinct proteins for critical modifications of the tRNAPhe anticodon loop. RNA 2012; 18:1921-33; PMID:22912484; http://dx.doi.org/10.1261/rna.035287.112
-
(2012)
RNA
, vol.18
, pp. 1921-1933
-
-
Guy, M.P.1
Podyma, B.M.2
Preston, M.A.3
Shaheen, H.H.4
Krivos, K.L.5
Limbach, P.A.6
Hopper, A.K.7
Phizicky, E.M.8
-
11
-
-
84920506759
-
Conservation of an intricate circuit for crucial modifications of the tRNAPhe anticodon loop in eukaryotes
-
PMID:25404562
-
Guy MP, Phizicky EM. Conservation of an intricate circuit for crucial modifications of the tRNAPhe anticodon loop in eukaryotes. RNA 2015; 21:61-74; PMID:25404562; http://dx.doi.org/10.1261/rna.047639.114
-
(2015)
RNA
, vol.21
, pp. 61-74
-
-
Guy, M.P.1
Phizicky, E.M.2
-
12
-
-
0028829125
-
The minimal gene complement of Mycoplasma genitalium
-
PMID:7569993
-
Fraser CM, Gocayne JD, White O, Adams MD, Clayton RA, Fleischmann RD, Bult CJ, Kerlavage AR, Sutton G, Kelley JM, et al. The minimal gene complement of Mycoplasma genitalium. Science 1995; 270:397-403; PMID:7569993; http://dx.doi.org/10.1126/science.270.5235.397
-
(1995)
Science
, vol.270
, pp. 397-403
-
-
Fraser, C.M.1
Gocayne, J.D.2
White, O.3
Adams, M.D.4
Clayton, R.A.5
Fleischmann, R.D.6
Bult, C.J.7
Kerlavage, A.R.8
Sutton, G.9
Kelley, J.M.10
-
13
-
-
84875692043
-
MODOMICS: A database of RNA modification pathways-2013 update
-
PMID:23118484
-
Machnicka MA, Milanowska K, Osman Oglou O, Purta E, Kurkowska M, Olchowik A, Januszewski W, Kalinowski S, Dunin-Horkawicz S, Rother KM, et al. MODOMICS: a database of RNA modification pathways-2013 update. Nucleic Acids Res 2013; 41: D262-7; PMID:23118484; http://dx.doi.org/10.1093/nar/gks1007
-
(2013)
Nucleic Acids Res
, vol.41
, pp. D262-D267
-
-
Machnicka, M.A.1
Milanowska, K.2
Osman Oglou, O.3
Purta, E.4
Kurkowska, M.5
Olchowik, A.6
Januszewski, W.7
Kalinowski, S.8
Dunin-Horkawicz, S.9
Rother, K.M.10
-
14
-
-
33846269602
-
tRNA's wobble decoding of the genome: 40 Years of modification
-
PMID:17187822
-
Agris PF, Vendeix FA, Graham WD. tRNA's wobble decoding of the genome: 40 years of modification. J Mol Biol 2007; 366:1-13; PMID:17187822; http://dx.doi.org/10.1016/j.jmb.2006.11.046
-
(2007)
J Mol Biol
, vol.366
, pp. 1-13
-
-
Agris, P.F.1
Vendeix, F.A.2
Graham, W.D.3
-
15
-
-
0032867610
-
A Watson-Crick base-pair- disrupting methyl group (m1A9) is sufficient for cloverleaf folding of human mitochondrial tRNALys
-
PMID:10529209
-
Helm M, Giege R, Florentz C. A Watson-Crick base-pair- disrupting methyl group (m1A9) is sufficient for cloverleaf folding of human mitochondrial tRNALys. Biochemistry 1999; 38:13338-46; PMID:10529209; http://dx.doi.org/10.1021/bi991061g
-
(1999)
Biochemistry
, vol.38
, pp. 13338-13346
-
-
Helm, M.1
Giege, R.2
Florentz, C.3
-
16
-
-
2642574393
-
Nuclear surveillance and degradation of hypomodified initiator tRNAMet in S. cerevisiae
-
PMID:15145828
-
Kadaba S, Krueger A, Trice T, Krecic AM, Hinnebusch AG, Anderson J. Nuclear surveillance and degradation of hypomodified initiator tRNAMet in S. cerevisiae. Genes Dev 2004; 18:1227-40; PMID:15145828; http://dx.doi.org/10.1101/gad.1183804
-
(2004)
Genes Dev
, vol.18
, pp. 1227-1240
-
-
Kadaba, S.1
Krueger, A.2
Trice, T.3
Krecic, A.M.4
Hinnebusch, A.G.5
Anderson, J.6
-
17
-
-
29544450711
-
Rapid tRNA decay can result from lack of nonessential modifications
-
PMID:16387656
-
Alexandrov A, Chernyakov I, Gu W, Hiley SL, Hughes TR, Grayhack EJ, Phizicky EM. Rapid tRNA decay can result from lack of nonessential modifications. Mol Cell 2006; 21:87-96; PMID:16387656; http://dx.doi.org/10.1016/j.molcel.2005.10.036
-
(2006)
Mol Cell
, vol.21
, pp. 87-96
-
-
Alexandrov, A.1
Chernyakov, I.2
Gu, W.3
Hiley, S.L.4
Hughes, T.R.5
Grayhack, E.J.6
Phizicky, E.M.7
-
18
-
-
85075274229
-
Nucleic acids are not boring long polymers of only four types of nucleotides: A guided tour
-
Grosjean H, ed. Austin, TX: Landes Bioscience
-
Grosjean H. Nucleic acids are not boring long polymers of only four types of nucleotides: a guided tour. In: Grosjean H, ed. DNA and RNA Modification Enzymes: Structure Mechanism, Function and Evolution. Austin, TX: Landes Bioscience, 2009:1-12.
-
(2009)
DNA and RNA Modification Enzymes: Structure Mechanism, Function and Evolution
, pp. 1-12
-
-
Grosjean, H.1
-
19
-
-
77956276464
-
tRNA biology charges to the front
-
PMID:20810645
-
Phizicky EM, Hopper AK. tRNA biology charges to the front. Genes Dev 2010; 24:1832-60; PMID:20810645; http://dx.doi.org/10.1101/gad.1956510
-
(2010)
Genes Dev
, vol.24
, pp. 1832-1860
-
-
Phizicky, E.M.1
Hopper, A.K.2
-
20
-
-
84901601146
-
Role of tRNA modifications in human diseases
-
Torres AG, Batlle E, Ribas de Pouplana L. Role of tRNA modifications in human diseases. Trends in Mol Med 2014; 20:306-14; http://dx.doi.org/10.1016/j.molmed.2014.01.008
-
(2014)
Trends in Mol Med
, vol.20
, pp. 306-314
-
-
Torres, A.G.1
Batlle, E.2
Ribas De Pouplana, L.3
-
22
-
-
0023851755
-
Purification, structure, and properties of Escherichia coli tRNA pseudouridine synthase I
-
PMID:3276686
-
Kammen HO, Marvel CC, Hardy L, Penhoet EE. Purification, structure, and properties of Escherichia coli tRNA pseudouridine synthase I. J Biol Chem 1988; 263:2255-63; PMID:3276686
-
(1988)
J Biol Chem
, vol.263
, pp. 2255-2263
-
-
Kammen, H.O.1
Marvel, C.C.2
Hardy, L.3
Penhoet, E.E.4
-
23
-
-
0031914957
-
Characterization of yeast protein Deg1 as pseudouridine synthase (Pus3) catalyzing the formation of psi 38 and psi 39 in tRNA anticodon loop
-
PMID:9430663
-
Lecointe F, Simos G, Sauer A, Hurt EC, Motorin Y, Grosjean H. Characterization of yeast protein Deg1 as pseudouridine synthase (Pus3) catalyzing the formation of psi 38 and psi 39 in tRNA anticodon loop. J Biol Chem 1998; 273:1316-23; PMID:9430663; http://dx.doi.org/10.1074/jbc.273.3.1316
-
(1998)
J Biol Chem
, vol.273
, pp. 1316-1323
-
-
Lecointe, F.1
Simos, G.2
Sauer, A.3
Hurt, E.C.4
Motorin, Y.5
Grosjean, H.6
-
24
-
-
79959311751
-
Pseudouridine formation in archaeal RNAs: The case of Haloferax volcanii
-
PMID:21628430
-
Blaby IK, Majumder M, Chatterjee K, Jana S, Grosjean H, de Crecy-Lagard V, Gupta R. Pseudouridine formation in archaeal RNAs: The case of Haloferax volcanii. RNA 2011; 17:1367-80; PMID:21628430; http://dx.doi.org/10.1261/rna.2712811
-
(2011)
RNA
, vol.17
, pp. 1367-1380
-
-
Blaby, I.K.1
Majumder, M.2
Chatterjee, K.3
Jana, S.4
Grosjean, H.5
De Crecy-Lagard, V.6
Gupta, R.7
-
25
-
-
0038475918
-
A novel unanticipated type of pseudouridine synthase with homologs in bacteria, archaea, and eukarya
-
PMID:12756329
-
Kaya Y, Ofengand J. A novel unanticipated type of pseudouridine synthase with homologs in bacteria, archaea, and eukarya. RNA 2003; 9:711-21; PMID:12756329; http://dx.doi.org/10.1261/rna.5230603
-
(2003)
RNA
, vol.9
, pp. 711-721
-
-
Kaya, Y.1
Ofengand, J.2
-
26
-
-
0142147324
-
The Saccharomyces cerevisiae U2 snRNA:pseudouridine-synthase Pus7p is a novel multisite-multisubstrate RNA:Psi-synthase also acting on tRNAs
-
PMID:14561887
-
Behm-Ansmant I, Urban A, Ma X, Yu YT, Motorin Y, Branlant C. The Saccharomyces cerevisiae U2 snRNA:pseudouridine-synthase Pus7p is a novel multisite-multisubstrate RNA:Psi-synthase also acting on tRNAs. RNA 2003; 9:1371-82; PMID:14561887; http://dx.doi.org/10.1261/rna.5520403
-
(2003)
RNA
, vol.9
, pp. 1371-1382
-
-
Behm-Ansmant, I.1
Urban, A.2
Ma, X.3
Yu, Y.T.4
Motorin, Y.5
Branlant, C.6
-
27
-
-
62549159161
-
Deficiency of the tRNATyr:Psi 35-synthase aPus7 in Archaea of the Sulfolobales order might be rescued by the H/ACA sRNA-guided machinery
-
PMID:19139072
-
Muller S, Urban A, Hecker A, Leclerc F, Branlant C, Motorin Y. Deficiency of the tRNATyr:Psi 35-synthase aPus7 in Archaea of the Sulfolobales order might be rescued by the H/ACA sRNA-guided machinery. Nucleic Acids Res 2009; 37:1308-22; PMID:19139072; http://dx.doi.org/10.1093/nar/gkn1037
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 1308-1322
-
-
Muller, S.1
Urban, A.2
Hecker, A.3
Leclerc, F.4
Branlant, C.5
Motorin, Y.6
-
28
-
-
66249095330
-
The universal YrdC/Sua5 family is required for the formation of threonylcarbamoyladenosine in tRNA
-
PMID:19287007
-
El Yacoubi B, Lyons B, Cruz Y, Reddy R, Nordin B, Agnelli F, Williamson JR, Schimmel P, Swairjo MA, de Crecy-Lagard V. The universal YrdC/Sua5 family is required for the formation of threonylcarbamoyladenosine in tRNA. Nucleic Acids Res 2009; 37:2894-909; PMID:19287007; http://dx.doi.org/10.1093/nar/gkp152
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 2894-2909
-
-
El Yacoubi, B.1
Lyons, B.2
Cruz, Y.3
Reddy, R.4
Nordin, B.5
Agnelli, F.6
Williamson, J.R.7
Schimmel, P.8
Swairjo, M.A.9
De Crecy-Lagard, V.10
-
29
-
-
79952281325
-
A role for the universal Kae1/Qri7/YgjD (COG0533) family in tRNA modification
-
PMID:21285948
-
El Yacoubi B, Hatin I, Deutsch C, Kahveci T, Rousset JP, Iwata-Reuyl D, Murzin AG, de Crecy-Lagard V. A role for the universal Kae1/Qri7/YgjD (COG0533) family in tRNA modification. EMBO J 2011; 30:882-93; PMID:21285948; http://dx.doi.org/10.1038/emboj.2010.363
-
(2011)
EMBO J
, vol.30
, pp. 882-893
-
-
El Yacoubi, B.1
Hatin, I.2
Deutsch, C.3
Kahveci, T.4
Rousset, J.P.5
Iwata-Reuyl, D.6
Murzin, A.G.7
De Crecy-Lagard, V.8
-
30
-
-
79952280840
-
The highly conserved KEOPS/EKC complex is essential for a universal tRNA modification, t6A
-
PMID:21183954
-
Srinivasan M, Mehta P, Yu Y, Prugar E, Koonin EV, Karzai AW, Sternglanz R. The highly conserved KEOPS/EKC complex is essential for a universal tRNA modification, t6A. EMBO J 2011; 30:873-81; PMID:21183954; http://dx.doi.org/10.1038/emboj.2010.343
-
(2011)
EMBO J
, vol.30
, pp. 873-881
-
-
Srinivasan, M.1
Mehta, P.2
Yu, Y.3
Prugar, E.4
Koonin, E.V.5
Karzai, A.W.6
Sternglanz, R.7
-
31
-
-
84859994582
-
Biosynthesis of threonylcarbamoyl adenosine (t6A), a universal tRNA nucleoside
-
PMID:22378793
-
Deutsch C, El Yacoubi B, de Crecy-Lagard V, Iwata-Reuyl D. Biosynthesis of threonylcarbamoyl adenosine (t6A), a universal tRNA nucleoside. J Biol Chem 2012; 287:13666-73; PMID:22378793; http://dx.doi.org/10.1074/jbc.M112.344028
-
(2012)
J Biol Chem
, vol.287
, pp. 13666-13673
-
-
Deutsch, C.1
El Yacoubi, B.2
De Crecy-Lagard, V.3
Iwata-Reuyl, D.4
-
32
-
-
84873653335
-
In vitro biosynthesis of a universal t6A tRNA modification in Archaea and Eukarya
-
PMID:23258706
-
Perrochia L, Crozat E, Hecker A, Zhang W, Bareille J, Collinet B, van Tilbeurgh H, Forterre P, Basta T. In vitro biosynthesis of a universal t6A tRNA modification in Archaea and Eukarya. Nucleic Acids Res 2013; 41:1953-64; PMID:23258706; http://dx.doi.org/10.1093/nar/gks1287
-
(2013)
Nucleic Acids Res
, vol.41
, pp. 1953-1964
-
-
Perrochia, L.1
Crozat, E.2
Hecker, A.3
Zhang, W.4
Bareille, J.5
Collinet, B.6
Van Tilbeurgh, H.7
Forterre, P.8
Basta, T.9
-
33
-
-
0021006616
-
The nucleotide sequence of an Escherichia coli operon containing genes for the tRNA(m1G)methyltransferase, the ribosomal proteins S16 and L19 and a 21-K polypeptide
-
PMID:6357787
-
Bystrom AS, Hjalmarsson KJ, Wikstrom PM, Bjork GR. The nucleotide sequence of an Escherichia coli operon containing genes for the tRNA(m1G)methyltransferase, the ribosomal proteins S16 and L19 and a 21-K polypeptide. EMBO J 1983; 2:899-905; PMID:6357787
-
(1983)
EMBO J
, vol.2
, pp. 899-905
-
-
Bystrom, A.S.1
Hjalmarsson, K.J.2
Wikstrom, P.M.3
Bjork, G.R.4
-
34
-
-
0035863196
-
A primordial tRNA modification required for the evolution of life?
-
PMID:11226173
-
Bjork GR, Jacobsson K, Nilsson K, Johansson MJ, Bystrom AS, Persson OP. A primordial tRNA modification required for the evolution of life? EMBO J 2001; 20:231-9; PMID:11226173; http://dx.doi.org/10.1093/emboj/20.1.231
-
(2001)
EMBO J
, vol.20
, pp. 231-239
-
-
Bjork, G.R.1
Jacobsson, K.2
Nilsson, K.3
Johansson, M.J.4
Bystrom, A.S.5
Persson, O.P.6
-
35
-
-
0035860329
-
Crystal structure of Rv2118c: An AdoMet-dependent methyltransferase from Mycobacterium tuberculosis H37Rv
-
PMID:11554794
-
Gupta A, Kumar PH, Dineshkumar TK, Varshney U, Subramanya HS. Crystal structure of Rv2118c: an AdoMet-dependent methyltransferase from Mycobacterium tuberculosis H37Rv. J Mol Biol 2001; 312:381-91; PMID:11554794; http://dx.doi.org/10.1006/jmbi.2001.4935
-
(2001)
J Mol Biol
, vol.312
, pp. 381-391
-
-
Gupta, A.1
Kumar, P.H.2
Dineshkumar, T.K.3
Varshney, U.4
Subramanya, H.S.5
-
36
-
-
32244445417
-
Crystal structure of Staphylococcus aureus tRNA adenosine deaminase TadA in complex with RNA
-
PMID:16415880
-
Losey HC, Ruthenburg AJ, Verdine GL. Crystal structure of Staphylococcus aureus tRNA adenosine deaminase TadA in complex with RNA. Nat Struct Mol Biol 2006; 13:153-9; PMID:16415880; http://dx.doi.org/10.1038/nsmb1047
-
(2006)
Nat Struct Mol Biol
, vol.13
, pp. 153-159
-
-
Losey, H.C.1
Ruthenburg, A.J.2
Verdine, G.L.3
-
37
-
-
40049103631
-
Crystal structure of Thermus thermophilus tRNA m1A58 methyltransferase and biophysical characterization of its interaction with tRNA
-
PMID:18262540
-
Barraud P, Golinelli-Pimpaneau B, Atmanene C, Sanglier S, Van Dorsselaer A, Droogmans L, Dardel F, Tisne C. Crystal structure of Thermus thermophilus tRNA m1A58 methyltransferase and biophysical characterization of its interaction with tRNA. J Mol Biol 2008; 377:535-50; PMID:18262540; http://dx.doi.org/10.1016/j.jmb.2008.01.041
-
(2008)
J Mol Biol
, vol.377
, pp. 535-550
-
-
Barraud, P.1
Golinelli-Pimpaneau, B.2
Atmanene, C.3
Sanglier, S.4
Van Dorsselaer, A.5
Droogmans, L.6
Dardel, F.7
Tisne, C.8
-
38
-
-
24644493257
-
Biochemical and structural studies of A-to-I editing by tRNA:A34 deaminases at the wobble position of transfer RNA
-
PMID:16142903
-
Elias Y, Huang RH. Biochemical and structural studies of A-to-I editing by tRNA:A34 deaminases at the wobble position of transfer RNA. Biochemistry 2005; 44:12057-65; PMID:16142903; http://dx.doi.org/10.1021/bi050499f
-
(2005)
Biochemistry
, vol.44
, pp. 12057-12065
-
-
Elias, Y.1
Huang, R.H.2
-
39
-
-
79957992142
-
A single zinc ion is sufficient for an active Trypanosoma brucei tRNA editing deaminase
-
PMID:21507956
-
Spears JL, Rubio MA, Gaston KW, Wywial E, Strikoudis A, Bujnicki JM, Papavasiliou FN, Alfonzo JD. A single zinc ion is sufficient for an active Trypanosoma brucei tRNA editing deaminase. J Biol Chem 2011; 286:20366-74; PMID:21507956; http://dx.doi.org/10.1074/jbc.M111.243568
-
(2011)
J Biol Chem
, vol.286
, pp. 20366-20374
-
-
Spears, J.L.1
Rubio, M.A.2
Gaston, K.W.3
Wywial, E.4
Strikoudis, A.5
Bujnicki, J.M.6
Papavasiliou, F.N.7
Alfonzo, J.D.8
-
40
-
-
58149189877
-
GtRNAdb: A database of transfer RNA genes detected in genomic sequence
-
PMID:18984615
-
Chan PP, Lowe TM. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. Nucleic Acids Res 2009; 37:D93-7; PMID:18984615; http://dx.doi.org/10.1093/nar/gkn787
-
(2009)
Nucleic Acids Res
, vol.37
, pp. D93-D97
-
-
Chan, P.P.1
Lowe, T.M.2
-
41
-
-
84868256656
-
The absence of A-to-I editing in the anticodon of plant cytoplasmic tRNA (Arg) ACG demands a relaxation of the wobble decoding rules
-
PMID:22922796
-
Aldinger CA, Leisinger AK, Gaston KW, Limbach PA, Igloi GL. The absence of A-to-I editing in the anticodon of plant cytoplasmic tRNA (Arg) ACG demands a relaxation of the wobble decoding rules. RNA Biol 2012; 9:1239-46; PMID:22922796; http://dx.doi.org/10.4161/rna.21839
-
(2012)
RNA Biol
, vol.9
, pp. 1239-1246
-
-
Aldinger, C.A.1
Leisinger, A.K.2
Gaston, K.W.3
Limbach, P.A.4
Igloi, G.L.5
-
42
-
-
0013936167
-
Codon-anticodon pairing: The wobble hypothesis
-
PMID:5969078
-
Crick FH. Codon-anticodon pairing: the wobble hypothesis. J Mol Biol 1966; 19:548-55; PMID:5969078; http://dx.doi.org/10.1016/S0022-2836(66)80022-0
-
(1966)
J Mol Biol
, vol.19
, pp. 548-555
-
-
Crick, F.H.1
-
43
-
-
16544374004
-
Structure of a purinepurine wobble base pair in the decoding center of the ribosome
-
PMID:15558050
-
Murphy FVt, Ramakrishnan V. Structure of a purinepurine wobble base pair in the decoding center of the ribosome. Nat Struct Mol Biol 2004; 11:1251-2; PMID:15558050; http://dx.doi.org/10.1038/nsmb866
-
(2004)
Nat Struct Mol Biol
, vol.11
, pp. 1251-1252
-
-
Murphy, F.Vt.1
Ramakrishnan, V.2
-
44
-
-
0033527628
-
An adenosine deaminase that generates inosine at the wobble position of tRNAs
-
PMID:10550050
-
Gerber AP, Keller W. An adenosine deaminase that generates inosine at the wobble position of tRNAs. Science 1999; 286:1146-9; PMID:10550050; http://dx.doi.org/10.1126/science.286.5442.1146
-
(1999)
Science
, vol.286
, pp. 1146-1149
-
-
Gerber, A.P.1
Keller, W.2
-
45
-
-
0037099742
-
tadA, an essential tRNA-specific adenosine deaminase from Escherichia coli
-
PMID:12110595
-
Wolf J, Gerber AP, Keller W. tadA, an essential tRNA-specific adenosine deaminase from Escherichia coli. EMBO J 2002; 21:3841-51; PMID:12110595; http://dx.doi.org/10.1093/emboj/cdf362
-
(2002)
EMBO J
, vol.21
, pp. 3841-3851
-
-
Wolf, J.1
Gerber, A.P.2
Keller, W.3
-
46
-
-
77953255163
-
Analysis of a genome-wide set of gene deletions in the fission yeast Schizosaccharomyces pombe
-
Kim DU, Hayles J, Kim D, Wood V, Park HO, Won M, Yoo HS, Duhig T, Nam M, Palmer G, et al. Analysis of a genome-wide set of gene deletions in the fission yeast Schizosaccharomyces pombe. Nat Biotech 2010; 28:617-23; http://dx.doi.org/10.1038/nbt.1628
-
(2010)
Nat Biotech
, vol.28
, pp. 617-623
-
-
Kim, D.U.1
Hayles, J.2
Kim, D.3
Wood, V.4
Park, H.O.5
Won, M.6
Yoo, H.S.7
Duhig, T.8
Nam, M.9
Palmer, G.10
-
47
-
-
84910618950
-
A-to-I editing on tRNAs: Biochemical, biological and evolutionary implications
-
PMID:25263703
-
Torres AG, Piñeyro D, Filonava L, Stracker TH, Batlle E, Ribas de Pouplana L. A-to-I editing on tRNAs: Biochemical, biological and evolutionary implications. FEBS Lett 2014; 588:4279-86; PMID:25263703; http://dx.doi.org/10.1016/j.febslet.2014.09.025
-
(2014)
FEBS Lett
, vol.588
, pp. 4279-4286
-
-
Torres, A.G.1
Piñeyro, D.2
Filonava, L.3
Stracker, T.H.4
Batlle, E.5
Ribas De Pouplana, L.6
-
48
-
-
36348992662
-
Wobble inosine tRNA modification is essential to cell cycle progression in G(1)/S and G(2)/M transitions in fission yeast
-
PMID:17875641
-
Tsutsumi S, Sugiura R, Ma Y, Tokuoka H, Ohta K, Ohte R, Noma A, Suzuki T, Kuno T. Wobble inosine tRNA modification is essential to cell cycle progression in G(1)/S and G(2)/M transitions in fission yeast. J Biol Chem 2007; 282:33459-65; PMID:17875641; http://dx.doi.org/10.1074/jbc.M706869200
-
(2007)
J Biol Chem
, vol.282
, pp. 33459-33465
-
-
Tsutsumi, S.1
Sugiura, R.2
Ma, Y.3
Tokuoka, H.4
Ohta, K.5
Ohte, R.6
Noma, A.7
Suzuki, T.8
Kuno, T.9
-
49
-
-
18144392611
-
Crystal structure of tRNA adenosine deaminase (TadA) from Aquifex aeolicus
-
PMID:15677468
-
Kuratani M, Ishii R, Bessho Y, Fukunaga R, Sengoku T, Shirouzu M, Sekine S, Yokoyama S. Crystal structure of tRNA adenosine deaminase (TadA) from Aquifex aeolicus. J Biol Chem 2005; 280:16002-8; PMID:15677468; http://dx.doi.org/10.1074/jbc.M414541200
-
(2005)
J Biol Chem
, vol.280
, pp. 16002-16008
-
-
Kuratani, M.1
Ishii, R.2
Bessho, Y.3
Fukunaga, R.4
Sengoku, T.5
Shirouzu, M.6
Sekine, S.7
Yokoyama, S.8
-
50
-
-
79959304876
-
The C-terminal end of the Trypanosoma brucei editing deaminase plays a critical role in tRNA binding
-
PMID:21602302
-
Ragone FL, Spears JL, Wohlgamuth-Benedum JM, Kreel N, Papavasiliou FN, Alfonzo JD. The C-terminal end of the Trypanosoma brucei editing deaminase plays a critical role in tRNA binding. RNA 2011; 17:1296-306; PMID:21602302; http://dx.doi.org/10.1261/rna.2748211
-
(2011)
RNA
, vol.17
, pp. 1296-1306
-
-
Ragone, F.L.1
Spears, J.L.2
Wohlgamuth-Benedum, J.M.3
Kreel, N.4
Papavasiliou, F.N.5
Alfonzo, J.D.6
-
51
-
-
0011895723
-
Mechanism, specificity and general properties of the yeast enzyme catalysing the formation of inosine 34 in the anticodon of transfer RNA
-
PMID:8893855
-
Auxilien S, Crain PF, Trewyn RW, Grosjean H. Mechanism, specificity and general properties of the yeast enzyme catalysing the formation of inosine 34 in the anticodon of transfer RNA. J Mol Biol 1996; 262:437-58; PMID:8893855; http://dx.doi.org/10.1006/jmbi.1996.0527
-
(1996)
J Mol Biol
, vol.262
, pp. 437-458
-
-
Auxilien, S.1
Crain, P.F.2
Trewyn, R.W.3
Grosjean, H.4
-
52
-
-
34249939828
-
An adenosine-to-inosine tRNA-editing enzyme that can perform C-to-U deamination of DNA
-
PMID:17483465
-
Rubio MA, Pastar I, Gaston KW, Ragone FL, Janzen CJ, Cross GA, Papavasiliou FN, Alfonzo JD. An adenosine-to-inosine tRNA-editing enzyme that can perform C-to-U deamination of DNA. Proc Natl Acad Sci U S A 2007; 104:7821-6; PMID:17483465; http://dx.doi.org/10.1073/pnas.0702394104
-
(2007)
Proc Natl Acad Sci U S A
, vol.104
, pp. 7821-7826
-
-
Rubio, M.A.1
Pastar, I.2
Gaston, K.W.3
Ragone, F.L.4
Janzen, C.J.5
Cross, G.A.6
Papavasiliou, F.N.7
Alfonzo, J.D.8
-
53
-
-
0025815046
-
The 3 A crystal structure of yeast initiator tRNA: Functional implications in initiator/ elongator discrimination
-
PMID:1915284
-
Basavappa R, Sigler PB. The 3 A crystal structure of yeast initiator tRNA: functional implications in initiator/ elongator discrimination. EMBO J 1991; 10:3105-11; PMID:1915284
-
(1991)
EMBO J
, vol.10
, pp. 3105-3111
-
-
Basavappa, R.1
Sigler, P.B.2
-
54
-
-
20444368818
-
RNA degradation by the exosome is promoted by a nuclear polyadenylation complex
-
PMID:15935758
-
LaCava J, Houseley J, Saveanu C, Petfalski E, Thompson E, Jacquier A, Tollervey D. RNA degradation by the exosome is promoted by a nuclear polyadenylation complex. Cell 2005; 121:713-24; PMID:15935758; http://dx.doi.org/10.1016/j.cell.2005.04.029
-
(2005)
Cell
, vol.121
, pp. 713-724
-
-
LaCava, J.1
Houseley, J.2
Saveanu, C.3
Petfalski, E.4
Thompson, E.5
Jacquier, A.6
Tollervey, D.7
-
55
-
-
22744459614
-
A new yeast poly(A) polymerase complex involved in RNA quality control
-
PMID:15828860
-
Vanacova S, Wolf J, Martin G, Blank D, Dettwiler S, Friedlein A, Langen H, Keith G, Keller W. A new yeast poly(A) polymerase complex involved in RNA quality control. PLoS Biol 2005; 3:e189; PMID:15828860; http://dx.doi.org/10.1371/journal.pbio.0030189
-
(2005)
PLoS Biol
, vol.3
, pp. e189
-
-
Vanacova, S.1
Wolf, J.2
Martin, G.3
Blank, D.4
Dettwiler, S.5
Friedlein, A.6
Langen, H.7
Keith, G.8
Keller, W.9
-
56
-
-
33344476794
-
Nuclear RNA surveillance in Saccharomyces cerevisiae: Trf4p-dependent polyadenylation of nascent hypomethylated tRNA and an aberrant form of 5S rRNA
-
PMID:16431988
-
Kadaba S, Wang X, Anderson JT. Nuclear RNA surveillance in Saccharomyces cerevisiae: Trf4p-dependent polyadenylation of nascent hypomethylated tRNA and an aberrant form of 5S rRNA. RNA 2006; 12:508-21; PMID:16431988; http://dx.doi.org/10.1261/rna.2305406
-
(2006)
RNA
, vol.12
, pp. 508-521
-
-
Kadaba, S.1
Wang, X.2
Anderson, J.T.3
-
57
-
-
34447300418
-
The exosome subunit Rrp44 plays a direct role in RNA substrate recognition
-
PMID:17643380
-
Schneider C, Anderson JT, Tollervey D. The exosome subunit Rrp44 plays a direct role in RNA substrate recognition. Mol Cell 2007; 27:324-31; PMID:17643380; http://dx.doi.org/10.1016/j.molcel.2007.06.006
-
(2007)
Mol Cell
, vol.27
, pp. 324-331
-
-
Schneider, C.1
Anderson, J.T.2
Tollervey, D.3
-
58
-
-
0032428969
-
The essential Gcd10p-Gcd14p nuclear complex is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA
-
PMID:9851972
-
Anderson J, Phan L, Cuesta R, Carlson BA, Pak M, Asano K, Bjork GR, Tamame M, Hinnebusch AG. The essential Gcd10p-Gcd14p nuclear complex is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA. Genes Dev 1998; 12:3650-62; PMID:9851972; http://dx.doi.org/10.1101/gad.12.23.3650
-
(1998)
Genes Dev
, vol.12
, pp. 3650-3662
-
-
Anderson, J.1
Phan, L.2
Cuesta, R.3
Carlson, B.A.4
Pak, M.5
Asano, K.6
Bjork, G.R.7
Tamame, M.8
Hinnebusch, A.G.9
-
59
-
-
50949130722
-
Mitochondrial dysfunction increases oxidative stress and decreases chronological life span in fission yeast
-
PMID:18665268
-
Zuin A, Gabrielli N, Calvo IA, Garcia-Santamarina S, Hoe KL, Kim DU, Park HO, Hayles J, Ayte J, Hidalgo E. Mitochondrial dysfunction increases oxidative stress and decreases chronological life span in fission yeast. PloS One 2008; 3:e2842; PMID:18665268; http://dx.doi.org/10.1371/journal.pone.0002842
-
(2008)
PloS One
, vol.3
, pp. e2842
-
-
Zuin, A.1
Gabrielli, N.2
Calvo, I.A.3
Garcia-Santamarina, S.4
Hoe, K.L.5
Kim, D.U.6
Park, H.O.7
Hayles, J.8
Ayte, J.9
Hidalgo, E.10
-
60
-
-
0022817680
-
Multiple GCD genes required for repression of GCN4, a transcriptional activator of amino acid biosynthetic genes in Saccharomyces cerevisiae
-
PMID:3540603
-
Harashima S, Hinnebusch AG. Multiple GCD genes required for repression of GCN4, a transcriptional activator of amino acid biosynthetic genes in Saccharomyces cerevisiae. Mol Cell Biol 1986; 6:3990-8; PMID:3540603
-
(1986)
Mol Cell Biol
, vol.6
, pp. 3990-3998
-
-
Harashima, S.1
Hinnebusch, A.G.2
-
61
-
-
0029085423
-
GCD10, a translational repressor of GCN4, is the RNA-binding subunit of eukaryotic translation initiation factor-3
-
PMID:7542616
-
Garcia-Barrio MT, Naranda T, Vazquez de Aldana CR, Cuesta R, Hinnebusch AG, Hershey JW, Tamame M. GCD10, a translational repressor of GCN4, is the RNA-binding subunit of eukaryotic translation initiation factor-3. Genes Dev 1995; 9:1781-96; PMID:7542616; http://dx.doi.org/10.1101/gad.9.14.1781
-
(1995)
Genes Dev
, vol.9
, pp. 1781-1796
-
-
Garcia-Barrio, M.T.1
Naranda, T.2
Vazquez De Aldana, C.R.3
Cuesta, R.4
Hinnebusch, A.G.5
Hershey, J.W.6
Tamame, M.7
-
62
-
-
0031982348
-
Identification of GCD14 and GCD15, novel genes required for translational repression of GCN4 mRNA in Saccharomyces cerevisiae
-
PMID:9539420
-
Cuesta R, Hinnebusch AG, Tamame M. Identification of GCD14 and GCD15, novel genes required for translational repression of GCN4 mRNA in Saccharomyces cerevisiae. Genetics 1998; 148:1007-20; PMID:9539420
-
(1998)
Genetics
, vol.148
, pp. 1007-1020
-
-
Cuesta, R.1
Hinnebusch, A.G.2
Tamame, M.3
-
63
-
-
0033013122
-
GCD14p, a repressor of GCN4 translation, cooperates with Gcd10p and Lhp1p in the maturation of initiator methionyl-tRNA in Saccharomyces cerevisiae
-
PMID:10330157
-
Calvo O, Cuesta R, Anderson J, Gutierrez N, Garcia-Barrio MT, Hinnebusch AG, Tamame M. GCD14p, a repressor of GCN4 translation, cooperates with Gcd10p and Lhp1p in the maturation of initiator methionyl-tRNA in Saccharomyces cerevisiae. Mol Cell Biol 1999; 19:4167-81; PMID:10330157
-
(1999)
Mol Cell Biol
, vol.19
, pp. 4167-4181
-
-
Calvo, O.1
Cuesta, R.2
Anderson, J.3
Gutierrez, N.4
Garcia-Barrio, M.T.5
Hinnebusch, A.G.6
Tamame, M.7
-
64
-
-
0034625166
-
The Gcd10p/Gcd14p complex is the essential two-subunit tRNA (1-methyladenosine) methyltransferase of Saccharomyces cerevisiae
-
PMID:10779558
-
Anderson J, Phan L, Hinnebusch AG. The Gcd10p/Gcd14p complex is the essential two-subunit tRNA (1-methyladenosine) methyltransferase of Saccharomyces cerevisiae. Proc Natl Acad Sci U S A 2000; 97:5173-8; PMID:10779558; http://dx.doi.org/10.1073/pnas.090102597
-
(2000)
Proc Natl Acad Sci U S A
, vol.97
, pp. 5173-5178
-
-
Anderson, J.1
Phan, L.2
Hinnebusch, A.G.3
-
65
-
-
36749070892
-
Conserved amino acids in each subunit of the heteroligomeric tRNA m1A58 Mtase from Saccharomyces cerevisiae contribute to tRNA binding
-
PMID:17932071
-
Ozanick SG, Bujnicki JM, Sem DS, Anderson JT. Conserved amino acids in each subunit of the heteroligomeric tRNA m1A58 Mtase from Saccharomyces cerevisiae contribute to tRNA binding. Nucleic Acids Res 2007; 35:6808-19; PMID:17932071; http://dx.doi.org/10.1093/nar/gkm574
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 6808-6819
-
-
Ozanick, S.G.1
Bujnicki, J.M.2
Sem, D.S.3
Anderson, J.T.4
-
66
-
-
0035955465
-
In silico analysis of the tRNA:m1A58 methyltransferase family: Homology-based fold prediction and identification of new members from Eubacteria and Archaea
-
PMID:11684083
-
Bujnicki JM. In silico analysis of the tRNA:m1A58 methyltransferase family: homology-based fold prediction and identification of new members from Eubacteria and Archaea. FEBS Lett 2001; 507:123-7; PMID:11684083; http://dx.doi.org/10.1016/S0014-5793(01)02962-3
-
(2001)
FEBS Lett
, vol.507
, pp. 123-127
-
-
Bujnicki, J.M.1
-
67
-
-
23644456550
-
The bipartite structure of the tRNA m1A58 methyltransferase from S. cerevisiae is conserved in humans
-
PMID:16043508
-
Ozanick S, Krecic A, Andersland J, Anderson JT. The bipartite structure of the tRNA m1A58 methyltransferase from S. cerevisiae is conserved in humans. RNA 2005; 11:1281-90; PMID:16043508; http://dx.doi.org/10.1261/rna.5040605
-
(2005)
RNA
, vol.11
, pp. 1281-1290
-
-
Ozanick, S.1
Krecic, A.2
Andersland, J.3
Anderson, J.T.4
-
68
-
-
0037799504
-
Cloning and characterization of tRNA (m1A58) methyltransferase (TrmI) from Thermus thermophilus HB27, a protein required for cell growth at extreme temperatures
-
PMID:12682365
-
Droogmans L, Roovers M, Bujnicki JM, Tricot C, Hartsch T, Stalon V, Grosjean H. Cloning and characterization of tRNA (m1A58) methyltransferase (TrmI) from Thermus thermophilus HB27, a protein required for cell growth at extreme temperatures. Nucleic Acids Res 2003; 31:2148-56; PMID:12682365; http://dx.doi.org/10.1093/nar/gkg314
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 2148-2156
-
-
Droogmans, L.1
Roovers, M.2
Bujnicki, J.M.3
Tricot, C.4
Hartsch, T.5
Stalon, V.6
Grosjean, H.7
-
69
-
-
1342307286
-
A primordial RNA modification enzyme: The case of tRNA (m1A) methyltransferase
-
PMID:14739239
-
Roovers M, Wouters J, Bujnicki JM, Tricot C, Stalon V, Grosjean H, Droogmans L. A primordial RNA modification enzyme: the case of tRNA (m1A) methyltransferase. Nucleic Acids Res 2004; 32:465-76; PMID:14739239; http://dx.doi.org/10.1093/nar/gkh191
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 465-476
-
-
Roovers, M.1
Wouters, J.2
Bujnicki, J.M.3
Tricot, C.4
Stalon, V.5
Grosjean, H.6
Droogmans, L.7
-
70
-
-
2342574137
-
Mycobacterium tuberculosis Rv2118c codes for a single-component homotetrameric m1A58 tRNA methyltransferase
-
PMID:14960715
-
Varshney U, Ramesh V, Madabushi A, Gaur R, Subramanya HS, RajBhandary UL. Mycobacterium tuberculosis Rv2118c codes for a single-component homotetrameric m1A58 tRNA methyltransferase. Nucleic Acids Res 2004; 32:1018-27; PMID:14960715; http://dx.doi.org/10.1093/nar/gkh207
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1018-1027
-
-
Varshney, U.1
Ramesh, V.2
Madabushi, A.3
Gaur, R.4
Subramanya, H.S.5
RajBhandary, U.L.6
-
71
-
-
84886286833
-
Distinct tRNA modifications in the thermo-acidophilic archaeon, Thermoplasma acidophilum
-
PMID:24076028
-
Tomikawa C, Ohira T, Inoue Y, Kawamura T, Yamagishi A, Suzuki T, Hori H. Distinct tRNA modifications in the thermo-acidophilic archaeon, Thermoplasma acidophilum. FEBS Lett 2013; 587:3575-80; PMID:24076028; http://dx.doi.org/10.1016/j.febslet.2013.09.021
-
(2013)
FEBS Lett
, vol.587
, pp. 3575-3580
-
-
Tomikawa, C.1
Ohira, T.2
Inoue, Y.3
Kawamura, T.4
Yamagishi, A.5
Suzuki, T.6
Hori, H.7
-
72
-
-
0016146021
-
Threedimensional tertiary structure of yeast phenylalanine transfer RNA
-
PMID:4601792
-
Kim SH, Suddath FL, Quigley GJ, McPherson A, Sussman JL, Wang AH, Seeman NC, Rich A. Threedimensional tertiary structure of yeast phenylalanine transfer RNA. Science 1974; 185:435-40; PMID:4601792; http://dx.doi.org/10.1126/science.185.4149.435
-
(1974)
Science
, vol.185
, pp. 435-440
-
-
Kim, S.H.1
Suddath, F.L.2
Quigley, G.J.3
McPherson, A.4
Sussman, J.L.5
Wang, A.H.6
Seeman, N.C.7
Rich, A.8
-
73
-
-
0028916219
-
Identification of base-triples in RNA using comparative sequence analysis
-
PMID:7537339
-
Gautheret D, Damberger SH, Gutell RR. Identification of base-triples in RNA using comparative sequence analysis. J Mol Biol 1995; 248:27-43; PMID:7537339; http://dx.doi.org/10.1006/jmbi.1995.0200
-
(1995)
J Mol Biol
, vol.248
, pp. 27-43
-
-
Gautheret, D.1
Damberger, S.H.2
Gutell, R.R.3
-
74
-
-
17844373810
-
tRNA m7G methyltransferase Trm8p/Trm82p: Evidence linking activity to a growth phenotype and implicating Trm82p in maintaining levels of active Trm8p
-
PMID:15811913
-
Alexandrov A, Grayhack EJ, Phizicky EM. tRNA m7G methyltransferase Trm8p/Trm82p: evidence linking activity to a growth phenotype and implicating Trm82p in maintaining levels of active Trm8p. RNA 2005; 11:821-30; PMID:15811913; http://dx.doi.org/10.1261/rna.2030705
-
(2005)
RNA
, vol.11
, pp. 821-830
-
-
Alexandrov, A.1
Grayhack, E.J.2
Phizicky, E.M.3
-
75
-
-
44149119097
-
Degradation of several hypomodified mature tRNA species in Saccharomyces cerevisiae is mediated by Met22 and the 5'-3' exonucleases Rat1 and Xrn1
-
PMID:18443146
-
Chernyakov I, Whipple JM, Kotelawala L, Grayhack EJ, Phizicky EM. Degradation of several hypomodified mature tRNA species in Saccharomyces cerevisiae is mediated by Met22 and the 5'-3' exonucleases Rat1 and Xrn1. Genes Dev 2008; 22:1369-80; PMID:18443146; http://dx.doi.org/10.1101/gad.1654308
-
(2008)
Genes Dev
, vol.22
, pp. 1369-1380
-
-
Chernyakov, I.1
Whipple, J.M.2
Kotelawala, L.3
Grayhack, E.J.4
Phizicky, E.M.5
-
76
-
-
84866622511
-
The yeast rapid tRNA decay pathway competes with elongation factor 1A for substrate tRNAs and acts on tRNAs lacking one or more of several modifications
-
PMID:22895820
-
Dewe JM, Whipple JM, Chernyakov I, Jaramillo LN, Phizicky EM. The yeast rapid tRNA decay pathway competes with elongation factor 1A for substrate tRNAs and acts on tRNAs lacking one or more of several modifications. RNA 2012; 18:1886-96; PMID:22895820; http://dx.doi.org/10.1261/rna.033654.112
-
(2012)
RNA
, vol.18
, pp. 1886-1896
-
-
Dewe, J.M.1
Whipple, J.M.2
Chernyakov, I.3
Jaramillo, L.N.4
Phizicky, E.M.5
-
77
-
-
77950345305
-
N7-Methylguanine at position 46 (m7G46) in tRNA from Thermus thermophilus is required for cell viability at high temperatures through a tRNA modification network
-
PMID:19934251
-
Tomikawa C, Yokogawa T, Kanai T, Hori H. N7-Methylguanine at position 46 (m7G46) in tRNA from Thermus thermophilus is required for cell viability at high temperatures through a tRNA modification network. Nucleic Acids Res 2010; 38:942-57; PMID:19934251; http://dx.doi.org/10.1093/nar/gkp1059
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 942-957
-
-
Tomikawa, C.1
Yokogawa, T.2
Kanai, T.3
Hori, H.4
-
78
-
-
0036795285
-
Two proteins that form a complex are required for 7-methylguanosine modification of yeast tRNA
-
PMID:12403464
-
Alexandrov A, Martzen MR, Phizicky EM. Two proteins that form a complex are required for 7-methylguanosine modification of yeast tRNA. RNA 2002; 8:1253-66; PMID:12403464; http://dx.doi.org/10.1017/S1355838202024019
-
(2002)
RNA
, vol.8
, pp. 1253-1266
-
-
Alexandrov, A.1
Martzen, M.R.2
Phizicky, E.M.3
-
79
-
-
0033527694
-
A biochemical genomics approach for identifying genes by the activity of their products
-
PMID:10550052
-
Martzen MR, McCraith SM, Spinelli SL, Torres FM, Fields S, Grayhack EJ, Phizicky EM. A biochemical genomics approach for identifying genes by the activity of their products. Science 1999; 286:1153-5; PMID:10550052; http://dx.doi.org/10.1126/science.286.5442.1153
-
(1999)
Science
, vol.286
, pp. 1153-1155
-
-
Martzen, M.R.1
McCraith, S.M.2
Spinelli, S.L.3
Torres, F.M.4
Fields, S.5
Grayhack, E.J.6
Phizicky, E.M.7
-
80
-
-
84907572307
-
tRNA Modifying Enzymes, NSUN2 and METTL1, Determine Sensitivity to 5-Fluorouracil in HeLa Cells
-
PMID:25233213
-
Okamoto M, Fujiwara M, Hori M, Okada K, Yazama F, Konishi H, Xiao Y, Qi G, Shimamoto F, Ota T, et al. tRNA Modifying Enzymes, NSUN2 and METTL1, Determine Sensitivity to 5-Fluorouracil in HeLa Cells. PLoS Genet 2014; 10:e1004639; PMID:25233213; http://dx.doi.org/10.1371/journal.pgen.1004639
-
(2014)
PLoS Genet
, vol.10
, pp. e1004639
-
-
Okamoto, M.1
Fujiwara, M.2
Hori, M.3
Okada, K.4
Yazama, F.5
Konishi, H.6
Xiao, Y.7
Qi, G.8
Shimamoto, F.9
Ota, T.10
-
81
-
-
18944395541
-
The tRNA methylase METTL1 is phosphorylated and inactivated by PKB and RSK in vitro and in cells
-
PMID:15861136
-
Cartlidge RA, Knebel A, Peggie M, Alexandrov A, Phizicky EM, Cohen P. The tRNA methylase METTL1 is phosphorylated and inactivated by PKB and RSK in vitro and in cells. EMBO J 2005; 24:1696-705; PMID:15861136; http://dx.doi.org/10.1038/sj.emboj.7600648
-
(2005)
EMBO J
, vol.24
, pp. 1696-1705
-
-
Cartlidge, R.A.1
Knebel, A.2
Peggie, M.3
Alexandrov, A.4
Phizicky, E.M.5
Cohen, P.6
-
82
-
-
0034662760
-
Isolation and characterization of a human chromosome 21q22.3 gene (WDR4) and its mouse homologue that code for a WD-repeat protein
-
PMID:10950928
-
Michaud J, Kudoh J, Berry A, Bonne-Tamir B, Lalioti MD, Rossier C, Shibuya K, Kawasaki K, Asakawa S, Minoshima S, et al. Isolation and characterization of a human chromosome 21q22.3 gene (WDR4) and its mouse homologue that code for a WD-repeat protein. Genomics 2000; 68:71-9; PMID:10950928; http://dx.doi.org/10.1006/geno.2000.6258
-
(2000)
Genomics
, vol.68
, pp. 71-79
-
-
Michaud, J.1
Kudoh, J.2
Berry, A.3
Bonne-Tamir, B.4
Lalioti, M.D.5
Rossier, C.6
Shibuya, K.7
Kawasaki, K.8
Asakawa, S.9
Minoshima, S.10
-
83
-
-
0038643071
-
The yggH gene of Escherichia coli encodes a tRNA (m7G46) methyltransferase
-
PMID:12730187
-
De Bie LG, Roovers M, Oudjama Y, Wattiez R, Tricot C, Stalon V, Droogmans L, Bujnicki JM. The yggH gene of Escherichia coli encodes a tRNA (m7G46) methyltransferase. J Bact 2003; 185:3238-43; PMID:12730187; http://dx.doi.org/10.1128/JB.185.10.3238-3243.2003
-
(2003)
J Bact
, vol.185
, pp. 3238-3243
-
-
De Bie, L.G.1
Roovers, M.2
Oudjama, Y.3
Wattiez, R.4
Tricot, C.5
Stalon, V.6
Droogmans, L.7
Bujnicki, J.M.8
-
84
-
-
33645862584
-
Crystal structure of Bacillus subtilis TrmB, the tRNA (m7G46) methyltransferase
-
PMID:16600901
-
Zegers I, Gigot D, van Vliet F, Tricot C, Aymerich S, Bujnicki JM, Kosinski J, Droogmans L. Crystal structure of Bacillus subtilis TrmB, the tRNA (m7G46) methyltransferase. Nucleic Acids Res 2006; 34:1925-34; PMID:16600901; http://dx.doi.org/10.1093/nar/gkl116
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 1925-1934
-
-
Zegers, I.1
Gigot, D.2
Van Vliet, F.3
Tricot, C.4
Aymerich, S.5
Bujnicki, J.M.6
Kosinski, J.7
Droogmans, L.8
-
85
-
-
37549067728
-
Structure of the yeast tRNA m7G methylation complex
-
PMID:18184583
-
Leulliot N, Chaillet M, Durand D, Ulryck N, Blondeau K, van Tilbeurgh H. Structure of the yeast tRNA m7G methylation complex. Structure 2008; 16:52-61; PMID:18184583; http://dx.doi.org/10.1016/j.str.2007.10.025
-
(2008)
Structure
, vol.16
, pp. 52-61
-
-
Leulliot, N.1
Chaillet, M.2
Durand, D.3
Ulryck, N.4
Blondeau, K.5
Van Tilbeurgh, H.6
-
86
-
-
17944373789
-
Sequence-structure-function relationships of a tRNA (m7G46) methyltransferase studied by homology modeling and site-directed mutagenesis
-
PMID:15789416
-
Purta E, van Vliet F, Tricot C, De Bie LG, Feder M, Skowronek K, Droogmans L, Bujnicki JM. Sequence-structure-function relationships of a tRNA (m7G46) methyltransferase studied by homology modeling and site-directed mutagenesis. Proteins 2005; 59:482-8; PMID:15789416; http://dx.doi.org/10.1002/prot.20454
-
(2005)
Proteins
, vol.59
, pp. 482-488
-
-
Purta, E.1
Van Vliet, F.2
Tricot, C.3
De Bie, L.G.4
Feder, M.5
Skowronek, K.6
Droogmans, L.7
Bujnicki, J.M.8
-
87
-
-
34047187493
-
RNA recognition mechanism of eukaryote tRNA (m7G46) methyltransferase (Trm8-Trm82 complex)
-
PMID:17382321
-
Matsumoto K, Toyooka T, Tomikawa C, Ochi A, Takano Y, Takayanagi N, Endo Y, Hori H. RNA recognition mechanism of eukaryote tRNA (m7G46) methyltransferase (Trm8-Trm82 complex). FEBS Lett 2007; 581:1599-604; PMID:17382321; http://dx.doi.org/10.1016/j.febslet.2007.03.023
-
(2007)
FEBS Lett
, vol.581
, pp. 1599-1604
-
-
Matsumoto, K.1
Toyooka, T.2
Tomikawa, C.3
Ochi, A.4
Takano, Y.5
Takayanagi, N.6
Endo, Y.7
Hori, H.8
-
88
-
-
33748711082
-
The yfhQ gene of Escherichia coli encodes a tRNA:Cm32/Um32 methyltransferase
-
PMID:16848900
-
Purta E, van Vliet F, Tkaczuk KL, Dunin-Horkawicz S, Mori H, Droogmans L, Bujnicki JM. The yfhQ gene of Escherichia coli encodes a tRNA:Cm32/Um32 methyltransferase. BMC Mol Biol 2006; 7:23; PMID:16848900; http://dx.doi.org/10.1186/1471-2199-7-23
-
(2006)
BMC Mol Biol
, vol.7
, pp. 23
-
-
Purta, E.1
Van Vliet, F.2
Tkaczuk, K.L.3
Dunin-Horkawicz, S.4
Mori, H.5
Droogmans, L.6
Bujnicki, J.M.7
-
89
-
-
84904503504
-
Characterization of two homologous 2′-O-methyltransferases showing different specificities for their tRNA substrates
-
PMID:24951554
-
Somme J, Van Laer B, Roovers M, Steyaert J, Versees W, Droogmans L. Characterization of two homologous 2′-O-methyltransferases showing different specificities for their tRNA substrates. RNA 2014; 20:1257-71; PMID:24951554; http://dx.doi.org/10.1261/rna.044503.114
-
(2014)
RNA
, vol.20
, pp. 1257-1271
-
-
Somme, J.1
Van Laer, B.2
Roovers, M.3
Steyaert, J.4
Versees, W.5
Droogmans, L.6
-
90
-
-
78149300508
-
YibK is the 2′-O-methyltransferase TrmL that modifies the wobble nucleotide in Escherichia coli tRNA(Leu) isoacceptors
-
PMID:20855540
-
Benitez-Paez A, Villarroya M, Douthwaite S, Gabaldon T, Armengod ME. YibK is the 2′-O-methyltransferase TrmL that modifies the wobble nucleotide in Escherichia coli tRNA(Leu) isoacceptors. RNA 2010; 16:2131-43; PMID:20855540; http://dx.doi.org/10.1261/rna.2245910
-
(2010)
RNA
, vol.16
, pp. 2131-2143
-
-
Benitez-Paez, A.1
Villarroya, M.2
Douthwaite, S.3
Gabaldon, T.4
Armengod, M.E.5
-
91
-
-
0034596029
-
The FtsJ/RrmJ heat shock protein of Escherichia coli is a 23 S ribosomal RNAmethyltransferase
-
PMID:10748051
-
Caldas T, Binet E, Bouloc P, Costa A, Desgres J, Richarme G. The FtsJ/RrmJ heat shock protein of Escherichia coli is a 23 S ribosomal RNAmethyltransferase. J BiolChem2000; 275:16414-9;PMID:10748051; http://dx.doi.org/10.1074/jbc.M001854200
-
(2000)
J BiolChem
, vol.275
, pp. 16414-16419
-
-
Caldas, T.1
Binet, E.2
Bouloc, P.3
Costa, A.4
Desgres, J.5
Richarme, G.6
-
92
-
-
0033637117
-
RNA methylation under heat shock control
-
Bugl H, Fauman EB, Staker BL, Zheng F, Kushner SR, Saper MA, Bardwell JC, Jakob U. RNA methylation under heat shock control. Mol Cell 2000; 6:349-60; PMID:10983982; http://dx.doi.org/10.1016/S1097-2765(00)00035-6
-
(2000)
Mol Cell
, vol.6
, pp. 349-360
-
-
Bugl, H.1
Fauman, E.B.2
Staker, B.L.3
Zheng, F.4
Kushner, S.R.5
Saper, M.A.6
Bardwell, J.C.7
Jakob, U.8
-
93
-
-
0037413674
-
Molecular phylogenetics of the RrmJ/fibrillarin superfamily of ribose 2′-O-methyltransferases
-
PMID:12527203
-
Feder M, Pas J, Wyrwicz LS, Bujnicki JM. Molecular phylogenetics of the RrmJ/fibrillarin superfamily of ribose 2′-O-methyltransferases. Gene 2003; 302:129-38; PMID:12527203; http://dx.doi.org/10.1016/S0378-1119(02)01097-1
-
(2003)
Gene
, vol.302
, pp. 129-138
-
-
Feder, M.1
Pas, J.2
Wyrwicz, L.S.3
Bujnicki, J.M.4
-
94
-
-
3242689583
-
Mutations in the FTSJ1 gene coding for a novel S-adenosylmethionine-binding protein cause nonsyndromic X-linked mental retardation
-
PMID:15162322
-
Freude K, Hoffmann K, Jensen LR, Delatycki MB, des Portes V, Moser B, Hamel B, van Bokhoven H, Moraine C, Fryns JP, et al. Mutations in the FTSJ1 gene coding for a novel S-adenosylmethionine-binding protein cause nonsyndromic X-linked mental retardation. Am J Hum Genet 2004; 75:305-9; PMID:15162322; http://dx.doi.org/10.1086/422507
-
(2004)
Am J Hum Genet
, vol.75
, pp. 305-309
-
-
Freude, K.1
Hoffmann, K.2
Jensen, L.R.3
Delatycki, M.B.4
Des Portes, V.5
Moser, B.6
Hamel, B.7
Van Bokhoven, H.8
Moraine, C.9
Fryns, J.P.10
-
95
-
-
4444382164
-
A splice site mutation in the methyltransferase gene FTSJ1 in Xp11.23 is associated with non-syndromic mental retardation in a large Belgian family (MRX9)
-
PMID:15342698
-
Ramser J, Winnepenninckx B, Lenski C, Errijgers V, Platzer M, Schwartz CE, Meindl A, Kooy RF. A splice site mutation in the methyltransferase gene FTSJ1 in Xp11.23 is associated with non-syndromic mental retardation in a large Belgian family (MRX9). J Med Genet 2004; 41:679-83; PMID:15342698; http://dx.doi.org/10.1136/jmg.2004.019000
-
(2004)
J Med Genet
, vol.41
, pp. 679-683
-
-
Ramser, J.1
Winnepenninckx, B.2
Lenski, C.3
Errijgers, V.4
Platzer, M.5
Schwartz, C.E.6
Meindl, A.7
Kooy, R.F.8
-
96
-
-
34248221547
-
Loss of SLC38A5 and FTSJ1 at Xp11.23 in three brothers with non-syndromic mental retardation due to a microdeletion in an unstable genomic region
-
Froyen G, Bauters M, Boyle J, Van Esch H, Govaerts K, van Bokhoven H, Ropers HH, Moraine C, Chelly J, Fryns JP, et al. Loss of SLC38A5 and FTSJ1 at Xp11.23 in three brothers with non-syndromic mental retardation due to a microdeletion in an unstable genomic region. Human Genet 2007; 121:539-47; http://dx.doi.org/10.1007/s00439-007-0343-1
-
(2007)
Human Genet
, vol.121
, pp. 539-547
-
-
Froyen, G.1
Bauters, M.2
Boyle, J.3
Van Esch, H.4
Govaerts, K.5
Van Bokhoven, H.6
Ropers, H.H.7
Moraine, C.8
Chelly, J.9
Fryns, J.P.10
-
97
-
-
45149103870
-
A loss-of-function mutation in the FTSJ1 gene causes nonsyndromic X-linked mental retardation in a Japanese family
-
PMID:18081026
-
Takano K, Nakagawa E, Inoue K, Kamada F, Kure S, Goto Y. A loss-of-function mutation in the FTSJ1 gene causes nonsyndromic X-linked mental retardation in a Japanese family. Am J Med Genet 2008; 147B:479-84; PMID:18081026; http://dx.doi.org/10.1002/ajmg.b.30638
-
(2008)
Am J Med Genet
, vol.147 B
, pp. 479-484
-
-
Takano, K.1
Nakagawa, E.2
Inoue, K.3
Kamada, F.4
Kure, S.5
Goto, Y.6
-
98
-
-
84883382797
-
The tRNA recognition mechanism of the minimalist SPOUT methyltransferase, TrmL
-
PMID:23804755
-
Liu RJ, Zhou M, Fang ZP, Wang M, Zhou XL, Wang ED. The tRNA recognition mechanism of the minimalist SPOUT methyltransferase, TrmL. Nucleic Acids Res 2013; 41:7828-42; PMID:23804755; http://dx.doi.org/10.1093/nar/gkt568
-
(2013)
Nucleic Acids Res
, vol.41
, pp. 7828-7842
-
-
Liu, R.J.1
Zhou, M.2
Fang, Z.P.3
Wang, M.4
Zhou, X.L.5
Wang, E.D.6
-
99
-
-
0035890644
-
Box C/D RNA guides for the ribose methylation of archaeal tRNAs. The tRNATrp intron guides the formation of two ribose-methylated nucleosides in the mature tRNATrp
-
PMID:11713301
-
Clouet d'Orval B, Bortolin ML, Gaspin C, Bachellerie JP. Box C/D RNA guides for the ribose methylation of archaeal tRNAs. The tRNATrp intron guides the formation of two ribose-methylated nucleosides in the mature tRNATrp. Nucleic Acids Res 2001; 29:4518-29; PMID:11713301; http://dx.doi.org/10.1093/nar/29.22.4518
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 4518-4529
-
-
Clouet D'Orval, B.1
Bortolin, M.L.2
Gaspin, C.3
Bachellerie, J.P.4
-
100
-
-
84859269865
-
2′-O-methylation of the wobble residue of elongator pretRNA (Met) in Haloferax volcanii is guided by a box C/D RNA containing unique features
-
PMID:21654217
-
Joardar A, Malliahgari SR, Skariah G, Gupta R. 2′-O-methylation of the wobble residue of elongator pretRNA (Met) in Haloferax volcanii is guided by a box C/D RNA containing unique features. RNA Biol 2011; 8:782-91; PMID:21654217; http://dx.doi.org/10.4161/rna.8.5.16015
-
(2011)
RNA Biol
, vol.8
, pp. 782-791
-
-
Joardar, A.1
Malliahgari, S.R.2
Skariah, G.3
Gupta, R.4
-
101
-
-
0036500548
-
MRM2 encodes a novel yeast mitochondrial 21S rRNA methyltransferase
-
PMID:11867542
-
Pintard L, Bujnicki JM, Lapeyre B, Bonnerot C. MRM2 encodes a novel yeast mitochondrial 21S rRNA methyltransferase. EMBO J 2002; 21:1139-47; PMID:11867542; http://dx.doi.org/10.1093/emboj/21.5.1139
-
(2002)
EMBO J
, vol.21
, pp. 1139-1147
-
-
Pintard, L.1
Bujnicki, J.M.2
Lapeyre, B.3
Bonnerot, C.4
-
102
-
-
8844219672
-
Spb1p-directed formation of Gm2922 in the ribosome catalytic center occurs at a late processing stage
-
PMID:15546625
-
Lapeyre B, Purushothaman SK. Spb1p-directed formation of Gm2922 in the ribosome catalytic center occurs at a late processing stage. Mol Cell 2004; 16:663-9; PMID:15546625; http://dx.doi.org/10.1016/j.molcel.2004.10.022
-
(2004)
Mol Cell
, vol.16
, pp. 663-669
-
-
Lapeyre, B.1
Purushothaman, S.K.2
-
103
-
-
80655144724
-
Two novel WD40 domain-containing proteins, Ere1 and Ere2, function in the retromer-mediated endosomal recycling pathway
-
PMID:21880895
-
Shi Y, Stefan CJ, Rue SM, Teis D, Emr SD. Two novel WD40 domain-containing proteins, Ere1 and Ere2, function in the retromer-mediated endosomal recycling pathway. Mol Biol Cell 2011; 22:4093-107; PMID:21880895; http://dx.doi.org/10.1091/mbc.E11-05-0440
-
(2011)
Mol Biol Cell
, vol.22
, pp. 4093-4107
-
-
Shi, Y.1
Stefan, C.J.2
Rue, S.M.3
Teis, D.4
Emr, S.D.5
-
104
-
-
40849098073
-
Chromatin-associated genes protect the yeast genome from Ty1 insertional mutagenesis
-
PMID:18202368
-
Nyswaner KM, Checkley MA, Yi M, Stephens RM, Garfinkel DJ. Chromatin-associated genes protect the yeast genome from Ty1 insertional mutagenesis. Genetics 2008; 178:197-214; PMID:18202368; http://dx.doi.org/10.1534/genetics.107.082602
-
(2008)
Genetics
, vol.178
, pp. 197-214
-
-
Nyswaner, K.M.1
Checkley, M.A.2
Yi, M.3
Stephens, R.M.4
Garfinkel, D.J.5
-
105
-
-
36749085941
-
Trm9-catalyzed tRNA modifications link translation to the DNA damage response
-
PMID:18082610
-
Begley U, Dyavaiah M, Patil A, Rooney JP, DiRenzo D, Young CM, Conklin DS, Zitomer RS, Begley TJ. Trm9-catalyzed tRNA modifications link translation to the DNA damage response. Mol Cell 2007; 28:860-70; PMID:18082610; http://dx.doi.org/10.1016/j.molcel.2007.09.021
-
(2007)
Mol Cell
, vol.28
, pp. 860-870
-
-
Begley, U.1
Dyavaiah, M.2
Patil, A.3
Rooney, J.P.4
DiRenzo, D.5
Young, C.M.6
Conklin, D.S.7
Zitomer, R.S.8
Begley, T.J.9
-
106
-
-
77951981033
-
Human AlkB homolog ABH8 Is a tRNA methyltransferase required for wobble uridine modification and DNA damage survival
-
PMID:20308323
-
Fu D, Brophy JA, Chan CT, Atmore KA, Begley U, Paules RS, Dedon PC, Begley TJ, Samson LD. Human AlkB homolog ABH8 Is a tRNA methyltransferase required for wobble uridine modification and DNA damage survival. Mol Cell Biol 2010; 30:2449-59; PMID:20308323; http://dx.doi.org/10.1128/MCB.01604-09
-
(2010)
Mol Cell Biol
, vol.30
, pp. 2449-2459
-
-
Fu, D.1
Brophy, J.A.2
Chan, C.T.3
Atmore, K.A.4
Begley, U.5
Paules, R.S.6
Dedon, P.C.7
Begley, T.J.8
Samson, L.D.9
-
107
-
-
0345060040
-
Novel methyltransferase for modified uridine residues at the wobble position of tRNA
-
PMID:14645538
-
Kalhor HR, Clarke S. Novel methyltransferase for modified uridine residues at the wobble position of tRNA. Mol Cell Biol 2003; 23:9283-92; PMID:14645538; http://dx.doi.org/10.1128/MCB.23.24.9283-9292.2003
-
(2003)
Mol Cell Biol
, vol.23
, pp. 9283-9292
-
-
Kalhor, H.R.1
Clarke, S.2
-
108
-
-
27144474752
-
The Kluyveromyces lactis gamma-toxin targets tRNA anticodons
-
PMID:16244131
-
Lu J, Huang B, Esberg A, Johansson MJ, Bystrom AS. The Kluyveromyces lactis gamma-toxin targets tRNA anticodons. RNA 2005; 11:1648-54; PMID:16244131; http://dx.doi.org/10.1261/rna.2172105
-
(2005)
RNA
, vol.11
, pp. 1648-1654
-
-
Lu, J.1
Huang, B.2
Esberg, A.3
Johansson, M.J.4
Bystrom, A.S.5
-
109
-
-
33645064276
-
tRNAGlu wobble uridine methylation by Trm9 identifies Elongator's key role for zymocininduced cell death in yeast
-
PMID:16390459
-
Jablonowski D, Zink S, Mehlgarten C, Daum G, Schaffrath R. tRNAGlu wobble uridine methylation by Trm9 identifies Elongator's key role for zymocininduced cell death in yeast. Mol Microbiol 2006; 59:677-88; PMID:16390459; http://dx.doi.org/10.1111/j.1365-2958.2005.04972.x
-
(2006)
Mol Microbiol
, vol.59
, pp. 677-688
-
-
Jablonowski, D.1
Zink, S.2
Mehlgarten, C.3
Daum, G.4
Schaffrath, R.5
-
110
-
-
49249137305
-
tRNA and protein methylase complexes mediate zymocin toxicity in yeast
-
PMID:18657261
-
Studte P, Zink S, Jablonowski D, Bar C, von der Haar T, Tuite MF, Schaffrath R. tRNA and protein methylase complexes mediate zymocin toxicity in yeast. Mol Microbiol 2008; 69:1266-77; PMID:18657261; http://dx.doi.org/10.1111/j.1365-2958.2008.06358.x
-
(2008)
Mol Microbiol
, vol.69
, pp. 1266-1277
-
-
Studte, P.1
Zink, S.2
Jablonowski, D.3
Bar, C.4
Von Der Haar, T.5
Tuite, M.F.6
Schaffrath, R.7
-
111
-
-
77949376153
-
Mammalian ALKBH8 possesses tRNA methyltransferase activity required for the biogenesis of multiple wobble uridine modifications implicated in translational decoding
-
PMID:20123966
-
Songe-Moller L, van den Born E, Leihne V, Vagbo CB, Kristoffersen T, Krokan HE, Kirpekar F, Falnes PO, Klungland A. Mammalian ALKBH8 possesses tRNA methyltransferase activity required for the biogenesis of multiple wobble uridine modifications implicated in translational decoding. Mol Cell Biol 2010; 30:1814-27; PMID:20123966; http://dx.doi.org/10.1128/MCB.01602-09
-
(2010)
Mol Cell Biol
, vol.30
, pp. 1814-1827
-
-
Songe-Moller, L.1
Van Den Born, E.2
Leihne, V.3
Vagbo, C.B.4
Kristoffersen, T.5
Krokan, H.E.6
Kirpekar, F.7
Falnes, P.O.8
Klungland, A.9
-
112
-
-
77952506949
-
Production of yeast (m2G10) methyltransferase (Trm11 and Trm112 complex) in a wheat germ cell-free translation system
-
PMID:19749381
-
Okada K, Muneyoshi Y, Endo Y, Hori H. Production of yeast (m2G10) methyltransferase (Trm11 and Trm112 complex) in a wheat germ cell-free translation system. Nucleic Acids Symp Ser 2009:303-4; PMID:19749381; http://dx.doi.org/10.1093/nass/nrp152
-
(2009)
Nucleic Acids Symp Ser
, pp. 303-304
-
-
Okada, K.1
Muneyoshi, Y.2
Endo, Y.3
Hori, H.4
-
113
-
-
0142215475
-
Global analysis of protein expression in yeast
-
PMID:14562106
-
Ghaemmaghami S, Huh WK, Bower K, Howson RW, Belle A, Dephoure N, O'Shea EK, Weissman JS. Global analysis of protein expression in yeast. Nature 2003; 425:737-41; PMID:14562106; http://dx.doi.org/10.1038/nature02046
-
(2003)
Nature
, vol.425
, pp. 737-741
-
-
Ghaemmaghami, S.1
Huh, W.K.2
Bower, K.3
Howson, R.W.4
Belle, A.5
Dephoure, N.6
O'Shea, E.K.7
Weissman, J.S.8
-
114
-
-
80051719282
-
Mechanism of activation of methyltransferases involved in translation by the Trm112 'hub' protein
-
PMID:21478168
-
Liger D, Mora L, Lazar N, Figaro S, Henri J, Scrima N, Buckingham RH, van Tilbeurgh H, Heurgue-Hamard V, Graille M. Mechanism of activation of methyltransferases involved in translation by the Trm112 'hub' protein. Nucleic Acids Res 2011; 39:6249-59; PMID:21478168; http://dx.doi.org/10.1093/nar/gkr176
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 6249-6259
-
-
Liger, D.1
Mora, L.2
Lazar, N.3
Figaro, S.4
Henri, J.5
Scrima, N.6
Buckingham, R.H.7
Van Tilbeurgh, H.8
Heurgue-Hamard, V.9
Graille, M.10
-
115
-
-
13244259475
-
The glutamine residue of the conserved GGQ motif in Saccharomyces cerevisiae release factor eRF1 is methylated by the product of the YDR140w gene
-
PMID:15509572
-
Heurgue-Hamard V, Champ S, Mora L, Merkulova-Rainon T, Kisselev LL, Buckingham RH. The glutamine residue of the conserved GGQ motif in Saccharomyces cerevisiae release factor eRF1 is methylated by the product of the YDR140w gene. J Biol Chem 2005; 280:2439-45; PMID:15509572; http://dx.doi.org/10.1074/jbc.M407252200
-
(2005)
J Biol Chem
, vol.280
, pp. 2439-2445
-
-
Heurgue-Hamard, V.1
Champ, S.2
Mora, L.3
Merkulova-Rainon, T.4
Kisselev, L.L.5
Buckingham, R.H.6
-
116
-
-
33646337436
-
The yeast translation release factors Mrf1p and Sup45p (eRF1) are methylated, respectively, by the methyltransferases Mtq1p and Mtq2p
-
PMID:16321977
-
Polevoda B, Span L, Sherman F. The yeast translation release factors Mrf1p and Sup45p (eRF1) are methylated, respectively, by the methyltransferases Mtq1p and Mtq2p. J Biol Chem 2006; 281:2562-71; PMID:16321977; http://dx.doi.org/10.1074/jbc.M507651200
-
(2006)
J Biol Chem
, vol.281
, pp. 2562-2571
-
-
Polevoda, B.1
Span, L.2
Sherman, F.3
-
117
-
-
0037022398
-
HemK, a class of protein methyl transferase with similarity to DNA methyl transferases, methylates polypeptide chain release factors, and hemK knockout induces defects in translational termination
-
PMID:11805295
-
Nakahigashi K, Kubo N, Narita S, Shimaoka T, Goto S, Oshima T, Mori H, Maeda M, Wada C, Inokuchi H. HemK, a class of protein methyl transferase with similarity to DNA methyl transferases, methylates polypeptide chain release factors, and hemK knockout induces defects in translational termination. Proc Natl Acad Sci U S A 2002; 99:1473-8; PMID:11805295; http://dx.doi.org/10.1073/pnas.032488499
-
(2002)
Proc Natl Acad Sci U S A
, vol.99
, pp. 1473-1478
-
-
Nakahigashi, K.1
Kubo, N.2
Narita, S.3
Shimaoka, T.4
Goto, S.5
Oshima, T.6
Mori, H.7
Maeda, M.8
Wada, C.9
Inokuchi, H.10
-
118
-
-
0037084101
-
The hemK gene in Escherichia coli encodes the N(5)-glutamine methyltransferase that modifies peptide release factors
-
PMID:11847124
-
Heurgue-Hamard V, Champ S, Engstrom A, Ehrenberg M, Buckingham RH. The hemK gene in Escherichia coli encodes the N(5)-glutamine methyltransferase that modifies peptide release factors. EMBO J 2002; 21:769-78; PMID:11847124; http://dx.doi.org/10.1093/emboj/21.4.769
-
(2002)
EMBO J
, vol.21
, pp. 769-778
-
-
Heurgue-Hamard, V.1
Champ, S.2
Engstrom, A.3
Ehrenberg, M.4
Buckingham, R.H.5
-
119
-
-
1642529580
-
Crystal structure of RlmAI: Implications for understanding the 23S rRNA G745/G748-methylation at the macrolide antibiotic-binding site
-
PMID:14999102
-
Das K, Acton T, Chiang Y, Shih L, Arnold E, Montelione GT. Crystal structure of RlmAI: implications for understanding the 23S rRNA G745/G748-methylation at the macrolide antibiotic-binding site. Proc Natl Acad Sci U S A 2004; 101:4041-6; PMID:14999102; http://dx.doi.org/10.1073/pnas.0400189101
-
(2004)
Proc Natl Acad Sci U S A
, vol.101
, pp. 4041-4046
-
-
Das, K.1
Acton, T.2
Chiang, Y.3
Shih, L.4
Arnold, E.5
Montelione, G.T.6
-
120
-
-
0031912037
-
Identification of the rrmA gene encoding the 23S rRNA m1G745 methyltransferase in Escherichia coli and characterization of an m1G745-deficient mutant
-
PMID:9440525
-
Gustafsson C, Persson BC. Identification of the rrmA gene encoding the 23S rRNA m1G745 methyltransferase in Escherichia coli and characterization of an m1G745-deficient mutant. J Bact 1998; 180:359-65; PMID:9440525
-
(1998)
J Bact
, vol.180
, pp. 359-365
-
-
Gustafsson, C.1
Persson, B.C.2
-
121
-
-
0037069328
-
Resistance to the macrolide antibiotic tylosin is conferred by single methylations at 23S rRNA nucleotides G748 and A2058 acting in synergy
-
PMID:12417742
-
Liu M, Douthwaite S. Resistance to the macrolide antibiotic tylosin is conferred by single methylations at 23S rRNA nucleotides G748 and A2058 acting in synergy. Proc Natl Acad Sci U S A 2002; 99:14658-63; PMID:12417742; http://dx.doi.org/10.1073/pnas.232580599
-
(2002)
Proc Natl Acad Sci U S A
, vol.99
, pp. 14658-14663
-
-
Liu, M.1
Douthwaite, S.2
-
122
-
-
43249099857
-
Bud23 methylates G1575 of 18S rRNA and is required for efficient nuclear export of pre-40S subunits
-
PMID:18332120
-
White J, Li Z, Sardana R, Bujnicki JM, Marcotte EM, Johnson AW. Bud23 methylates G1575 of 18S rRNA and is required for efficient nuclear export of pre-40S subunits. Mol Cell Biol 2008; 28:3151-61; PMID:18332120; http://dx.doi.org/10.1128/MCB.01674-07
-
(2008)
Mol Cell Biol
, vol.28
, pp. 3151-3161
-
-
White, J.1
Li, Z.2
Sardana, R.3
Bujnicki, J.M.4
Marcotte, E.M.5
Johnson, A.W.6
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