메뉴 건너뛰기




Volumn 9, Issue 11, 2003, Pages 1371-1382

The Saccharomyces cerevisiae U2 snRNA:pseudouridine-synthase Pus7p is a novel multisite-multisubstrate RNA:ψ-synthase also acting on tRNAs

Author keywords

Intron dependent; Pre tRNATyr; Pseudouridine synthase; tRNAs; UsnRNAs; Yeast

Indexed keywords

DNA; PHOSPHORUS 32; PSEUDOURIDINE; PSEUDOURIDINE SYNTHASE; RIBOSOME RNA; SYNTHETASE; TRANSFER RNA; UNCLASSIFIED DRUG;

EID: 0142147324     PISSN: 13558382     EISSN: None     Source Type: Journal    
DOI: 10.1261/rna.5520403     Document Type: Article
Times cited : (94)

References (46)
  • 2
    • 0035287820 scopus 로고    scopus 로고
    • Identification of RNA modification enzymes using sequence homology
    • Ansmant, I. and Motorin, Y. 2001. Identification of RNA modification enzymes using sequence homology. Mol. Biol. (Mosk.) 35: 248-267.
    • (2001) Mol. Biol. (Mosk.) , vol.35 , pp. 248-267
    • Ansmant, I.1    Motorin, Y.2
  • 3
    • 0034193118 scopus 로고    scopus 로고
    • Identification of the Saccharomyces cerevisiae RNA:pseudouridine synthase responsible for formation of ψ(2819) in 21S mitochondrial ribosomal RNA
    • Ansmant, I., Massenet, S., Grosjean, H., Motorin, Y., and Branlant, C. 2000. Identification of the Saccharomyces cerevisiae RNA:pseudouridine synthase responsible for formation of ψ(2819) in 21S mitochondrial ribosomal RNA. Nucleic Acids Res. 28: 1941-1946.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 1941-1946
    • Ansmant, I.1    Massenet, S.2    Grosjean, H.3    Motorin, Y.4    Branlant, C.5
  • 4
    • 0035860809 scopus 로고    scopus 로고
    • Identification and characterization of the tRNA: ψ31-synthase (Pus6p) of Saccharomyces cerevisiae
    • Ansmant, I., Motorin, Y., Massenet, S., Grosjean, H., and Branlant, C. 2001. Identification and characterization of the tRNA: ψ31-synthase (Pus6p) of Saccharomyces cerevisiae. J. Biol. Chem. 276: 34934-34940.
    • (2001) J. Biol. Chem. , vol.276 , pp. 34934-34940
    • Ansmant, I.1    Motorin, Y.2    Massenet, S.3    Grosjean, H.4    Branlant, C.5
  • 5
    • 0011895723 scopus 로고    scopus 로고
    • Mechanism, specificity and general properties of the yeast enzyme catalysing the formation of inosine 34 in the anticodon of transfer RNA
    • Auxilien, S., Crain, P.F., Trewyn, R.W., and Grosjean, H. 1996. Mechanism, specificity and general properties of the yeast enzyme catalysing the formation of inosine 34 in the anticodon of transfer RNA. J. Mol. Biol. 262: 437-458.
    • (1996) J. Mol. Biol. , vol.262 , pp. 437-458
    • Auxilien, S.1    Crain, P.F.2    Trewyn, R.W.3    Grosjean, H.4
  • 6
    • 0027438034 scopus 로고
    • Four newly located pseudouridylate residues in Escherichia coli 23S ribosomal RNA are all at the peptidyltransferase center: Analysis by the application of a new sequencing technique
    • Bakin, A. and Ofengand, J. 1993. Four newly located pseudouridylate residues in Escherichia coli 23S ribosomal RNA are all at the peptidyltransferase center: Analysis by the application of a new sequencing technique. Biochemistry 32: 9754-9762.
    • (1993) Biochemistry , vol.32 , pp. 9754-9762
    • Bakin, A.1    Ofengand, J.2
  • 7
    • 0030772852 scopus 로고    scopus 로고
    • The yeast gene YNL292w encodes a pseudouridine synthase (Pus4) catalyzing the formation of ψ55 in both mitochondrial and cytoplasmic tRNAs
    • Becker, H.F., Motorin, Y., Planta, R.J., and Grosjean, H. 1997. The yeast gene YNL292w encodes a pseudouridine synthase (Pus4) catalyzing the formation of ψ55 in both mitochondrial and cytoplasmic tRNAs. Nucleic Acids Res. 25: 4493-4499.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 4493-4499
    • Becker, H.F.1    Motorin, Y.2    Planta, R.J.3    Grosjean, H.4
  • 8
    • 0019786340 scopus 로고
    • Primary and secondary structures of Escherichia coli MRE 600 23S ribosomal RNA. Comparison with models of secondary structure for maize chloroplast 23S rRNA and for large portions of mouse and human 16S mitochondrial rRNAs
    • Branlant, C., Krol, A., Machatt, M.A., Pouyet, J., Ebel, J.P., Edwards, K., and Kossel, H. 1981. Primary and secondary structures of Escherichia coli MRE 600 23S ribosomal RNA. Comparison with models of secondary structure for maize chloroplast 23S rRNA and for large portions of mouse and human 16S mitochondrial rRNAs. Nucleic Acids Res. 9: 4303-4324.
    • (1981) Nucleic Acids Res. , vol.9 , pp. 4303-4324
    • Branlant, C.1    Krol, A.2    Machatt, M.A.3    Pouyet, J.4    Ebel, J.P.5    Edwards, K.6    Kossel, H.7
  • 9
    • 0033935223 scopus 로고    scopus 로고
    • Pseudouridine in RNA: What, where, how, and why
    • Charette, M. and Gray, M.W. 2000. Pseudouridine in RNA: What, where, how, and why. IUBMB Life 49: 341-351.
    • (2000) IUBMB Life , vol.49 , pp. 341-351
    • Charette, M.1    Gray, M.W.2
  • 11
    • 0032540887 scopus 로고    scopus 로고
    • The rluC gene of Escherichia coli codes for a pseudouridine synthase that is solely responsible for synthesis of pseudouridine at positions 955, 2504, and 2580 in 23S ribosomal RNA
    • Conrad, J., Sun, D., Englund, N., and Ofengand, J. 1998. The rluC gene of Escherichia coli codes for a pseudouridine synthase that is solely responsible for synthesis of pseudouridine at positions 955, 2504, and 2580 in 23S ribosomal RNA. J. Biol. Chem. 273: 18562-18566.
    • (1998) J. Biol. Chem. , vol.273 , pp. 18562-18566
    • Conrad, J.1    Sun, D.2    Englund, N.3    Ofengand, J.4
  • 12
    • 0033053644 scopus 로고    scopus 로고
    • 16S ribosomal RNA pseudouridine synthase RsuA of Escherichia coli: Deletion, mutation of the conserved Asp102 residue, and sequence comparison among all other pseudouridine synthases
    • Conrad, J., Niu, L., Rudd, K., Lane, B.G., and Ofengand, J. 1999. 16S ribosomal RNA pseudouridine synthase RsuA of Escherichia coli: Deletion, mutation of the conserved Asp102 residue, and sequence comparison among all other pseudouridine synthases. RNA 5: 751-763.
    • (1999) RNA , vol.5 , pp. 751-763
    • Conrad, J.1    Niu, L.2    Rudd, K.3    Lane, B.G.4    Ofengand, J.5
  • 13
    • 0036629250 scopus 로고    scopus 로고
    • rRNA modifications and ribosome function
    • Decatur, W.A. and Fournier, M.J. 2002. rRNA modifications and ribosome function. Trends Biochem. Sci. 27: 344-351.
    • (2002) Trends Biochem. Sci. , vol.27 , pp. 344-351
    • Decatur, W.A.1    Fournier, M.J.2
  • 14
    • 0032608471 scopus 로고    scopus 로고
    • Structure and biogenesis of small nucleolar RNAs acting as guides for ribosomal RNA modification
    • Filipowicz, W., Pelczar, P., Pogacic, V., and Dragon, F. 1999. Structure and biogenesis of small nucleolar RNAs acting as guides for ribosomal RNA modification. Acta Biochim. Pol. 46: 377-389.
    • (1999) Acta Biochim. Pol. , vol.46 , pp. 377-389
    • Filipowicz, W.1    Pelczar, P.2    Pogacic, V.3    Dragon, F.4
  • 15
    • 0030711050 scopus 로고    scopus 로고
    • Site-specific pseudouridine formation in preribosomal RNA is guided by small nucleolar RNAs
    • Ganot, P., Bortolin, M.L., and Kiss, T. 1997. Site-specific pseudouridine formation in preribosomal RNA is guided by small nucleolar RNAs. Cell 89: 799-809.
    • (1997) Cell , vol.89 , pp. 799-809
    • Ganot, P.1    Bortolin, M.L.2    Kiss, T.3
  • 16
    • 33751157452 scopus 로고
    • In vitro methylation of Escherichia coli 16S rRNA by tRNA (m5U54)-methyltransferase
    • Gu, X., Ofengand, J., and Santi, D. V. 1994. In vitro methylation of Escherichia coli 16S rRNA by tRNA (m5U54)-methyltransferase. Biochemistry 33: 2255-2261.
    • (1994) Biochemistry , vol.33 , pp. 2255-2261
    • Gu, X.1    Ofengand, J.2    Santi, D.V.3
  • 17
    • 0032506248 scopus 로고    scopus 로고
    • Identification of two Escherichia coli pseudouridine synthases that show multisite specificity for 23S RNA
    • Huang, L., Ku, J., Pookanjanatavip, M., Gu, X., Wang, D., Greene, P.J., and Santi, D.V. 1998. Identification of two Escherichia coli pseudouridine synthases that show multisite specificity for 23S RNA. Biochemistry 37: 15951-15957.
    • (1998) Biochemistry , vol.37 , pp. 15951-15957
    • Huang, L.1    Ku, J.2    Pookanjanatavip, M.3    Gu, X.4    Wang, D.5    Greene, P.J.6    Santi, D.V.7
  • 18
    • 0035355205 scopus 로고    scopus 로고
    • RNomics: An experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse
    • Huttenhofer, A., Kiefmann, M., Meier-Ewert, S., O'Brien, J., Lehrach, H., Bachellerie, J.P., and Brosius, J. 2001. RNomics: An experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. EMBO J. 20: 2943-2953.
    • (2001) EMBO J. , vol.20 , pp. 2943-2953
    • Huttenhofer, A.1    Kiefmann, M.2    Meier-Ewert, S.3    O'Brien, J.4    Lehrach, H.5    Bachellerie, J.P.6    Brosius, J.7
  • 20
    • 0020645463 scopus 로고
    • Tyr gene intron is essential for correct modification of its tRNA product
    • Tyr gene intron is essential for correct modification of its tRNA product. Nature 302: 681-687.
    • (1983) Nature , vol.302 , pp. 681-687
    • Johnson, P.F.1    Abelson, J.2
  • 21
    • 0023851755 scopus 로고
    • Purification, structure, and properties of Escherichia coli tRNA pseudouridine synthase I
    • Kammen, H.O., Marvel, C.C., Hardy, L., and Penhoet, E.E. 1988. Purification, structure, and properties of Escherichia coli tRNA pseudouridine synthase I. J. Biol. Chem. 263: 2255-2263.
    • (1988) J. Biol. Chem. , vol.263 , pp. 2255-2263
    • Kammen, H.O.1    Marvel, C.C.2    Hardy, L.3    Penhoet, E.E.4
  • 22
    • 0038475918 scopus 로고    scopus 로고
    • A novel unanticipated type of pseudouridine synthase with homologs in bacteria, archaea, and eukarya
    • Kaya, Y. and Ofengand, J. 2003. A novel unanticipated type of pseudouridine synthase with homologs in bacteria, archaea, and eukarya. RNA 9: 711-721.
    • (2003) RNA , vol.9 , pp. 711-721
    • Kaya, Y.1    Ofengand, J.2
  • 23
    • 0028936082 scopus 로고
    • Mobilities of modified ribonucleotides on two-dimensional cellulose thin-layer chromatography
    • Keith, G. 1995. Mobilities of modified ribonucleotides on two-dimensional cellulose thin-layer chromatography. Biochimie 77: 142-144.
    • (1995) Biochimie , vol.77 , pp. 142-144
    • Keith, G.1
  • 24
    • 0035898634 scopus 로고    scopus 로고
    • Small nucleolar RNA-guided post-transcriptional modification of cellular RNAs
    • Kiss, T. 2001. Small nucleolar RNA-guided post-transcriptional modification of cellular RNAs. EMBO J. 20: 3617-3622.
    • (2001) EMBO J. , vol.20 , pp. 3617-3622
    • Kiss, T.1
  • 25
    • 0037133942 scopus 로고    scopus 로고
    • Small nucleolar RNAs: An abundant group of noncoding RNAs with diverse cellular functions
    • -. 2002. Small nucleolar RNAs: An abundant group of noncoding RNAs with diverse cellular functions. Cell 109: 145-148.
    • (2002) Cell , vol.109 , pp. 145-148
  • 26
    • 0029945504 scopus 로고    scopus 로고
    • Pseudouridine synthases: Four families of enzymes containing a putative uridine-binding motif also conserved in dUTPases and dCTP deaminases
    • Koonin, E.V. 1996. Pseudouridine synthases: Four families of enzymes containing a putative uridine-binding motif also conserved in dUTPases and dCTP deaminases. Nucleic Acids Res. 24: 2411-2415.
    • (1996) Nucleic Acids Res. , vol.24 , pp. 2411-2415
    • Koonin, E.V.1
  • 27
    • 0031758488 scopus 로고    scopus 로고
    • Birth of the snoRNPs: The evolution of the modification-guide snoRNAs
    • Lafontaine, D.L., and Tollervey, D. 1998. Birth of the snoRNPs: the evolution of the modification-guide snoRNAs. Trends Biochem. Sci. 23: 383-388.
    • (1998) Trends Biochem. Sci. , vol.23 , pp. 383-388
    • Lafontaine, D.L.1    Tollervey, D.2
  • 28
    • 0031914957 scopus 로고    scopus 로고
    • Characterization of yeast protein Deg1 as pseudouridine synthase (Pus3) catalyzing the formation of ψ38 and ψ39 in tRNA anticodon loop
    • Lecointe, F., Simos, G., Sauer, A., Hurt, E.C., Motorin, Y., and Grosjean, H. 1998. Characterization of yeast protein Deg1 as pseudouridine synthase (Pus3) catalyzing the formation of ψ38 and ψ39 in tRNA anticodon loop. J. Biol. Chem. 273: 1316-1323.
    • (1998) J. Biol. Chem. , vol.273 , pp. 1316-1323
    • Lecointe, F.1    Simos, G.2    Sauer, A.3    Hurt, E.C.4    Motorin, Y.5    Grosjean, H.6
  • 29
    • 0037447130 scopus 로고    scopus 로고
    • Pseudouridylation (Psi) of U2 snRNA in S. cerevisiae is catalyzed by an RNA-independent mechanism
    • Ma, X., Zhao, X., and Yu, Y.-T. 2003. Pseudouridylation (Psi) of U2 snRNA in S. cerevisiae is catalyzed by an RNA-independent mechanism. EMBO J. 22: 1889-1897.
    • (2003) EMBO J. , vol.22 , pp. 1889-1897
    • Ma, X.1    Zhao, X.2    Yu, Y.-T.3
  • 30
    • 0002425959 scopus 로고    scopus 로고
    • Posttranscriptional modifications in the U Small Nuclear RNAs
    • A (eds. H. Grosjean and R. Benne). SM Press, Washington, DC
    • Massenet, S., Mougin, A., and Branlant, C. 1998. Posttranscriptional modifications in the U Small Nuclear RNAs. In The modification and editing of RNA (eds. H. Grosjean and R. Benne), pp. 201-228. ASM Press, Washington, DC.
    • (1998) The Modification and Editing of RNA , pp. 201-228
    • Massenet, S.1    Mougin, A.2    Branlant, C.3
  • 31
    • 0033046012 scopus 로고    scopus 로고
    • Pseudouridine mapping in the Saccharomyces cerevisiae spliceosomal U small nuclear RNAs (snRNAs) reveals that pseudouridine synthase Pus1p exhibits a dual substrate specificity for U2 snRNA and tRNA
    • Massenet, S., Motorin, Y., Lafontaine, D.L., Hurt, E.C., Grosjean, H., and Branlant, C. 1999. Pseudouridine mapping in the Saccharomyces cerevisiae spliceosomal U small nuclear RNAs (snRNAs) reveals that pseudouridine synthase Pus1p exhibits a dual substrate specificity for U2 snRNA and tRNA. Mol. Cell. Biol. 19: 2142-2154.
    • (1999) Mol. Cell. Biol. , vol.19 , pp. 2142-2154
    • Massenet, S.1    Motorin, Y.2    Lafontaine, D.L.3    Hurt, E.C.4    Grosjean, H.5    Branlant, C.6
  • 32
    • 0031870753 scopus 로고    scopus 로고
    • The yeast tRNA:pseudouridine synthase Pus1p displays a multisite substrate specificity
    • Motorin, Y., Keith, G., Simon, C., Foiret, D., Simos, G., Hurt, E., and Grosjean, H. 1998. The yeast tRNA:pseudouridine synthase Pus1p displays a multisite substrate specificity. RNA 4: 856-869.
    • (1998) RNA , vol.4 , pp. 856-869
    • Motorin, Y.1    Keith, G.2    Simon, C.3    Foiret, D.4    Simos, G.5    Hurt, E.6    Grosjean, H.7
  • 33
    • 0028953840 scopus 로고
    • Yeast vectors for the controlled expression of heterologous proteins in different genetic backgrounds
    • Mumberg, D., Muller, R., and Funk, M. 1995. Yeast vectors for the controlled expression of heterologous proteins in different genetic backgrounds. Gene 156: 119-122.
    • (1995) Gene , vol.156 , pp. 119-122
    • Mumberg, D.1    Muller, R.2    Funk, M.3
  • 34
    • 0034975454 scopus 로고    scopus 로고
    • A conserved pseudouridine modification in eukaryotic U2 snRNA induces a change in branchsite architecture
    • Newby, M.I., and Greenbaum, N.L. 2001. A conserved pseudouridine modification in eukaryotic U2 snRNA induces a change in branchsite architecture. RNA 7: 833-845.
    • (2001) RNA , vol.7 , pp. 833-845
    • Newby, M.I.1    Greenbaum, N.L.2
  • 35
    • 0036896469 scopus 로고    scopus 로고
    • Sculpting of the spliceosomal branch site recognition motif by a conserved pseudouridine
    • -. 2002. Sculpting of the spliceosomal branch site recognition motif by a conserved pseudouridine. Nat. Struct. Biol. 9: 958-965.
    • (2002) Nat. Struct. Biol. , vol.9 , pp. 958-965
  • 36
    • 0030771087 scopus 로고    scopus 로고
    • Small nucleolar RNAs direct site-specific synthesis of pseudouridine in ribosomal
    • Ni, J., Tien, A.L., and Fournier, MJ. 1997. Small nucleolar RNAs direct site-specific synthesis of pseudouridine in ribosomal RNA Cell 89: 565-573.
    • (1997) RNA Cell , vol.89 , pp. 565-573
    • Ni, J.1    Tien, A.L.2    Fournier, M.J.3
  • 37
    • 0029258983 scopus 로고
    • Purification, cloning, and properties of the tRNA ψ55 synthase from Escherichia coli
    • Nurse, K., Wrzesinski, J., Bakin, A., Lane, B.G., and Ofengand, J. 1995. Purification, cloning, and properties of the tRNA ψ55 synthase from Escherichia coli. RNA 1: 102-112.
    • (1995) RNA , vol.1 , pp. 102-112
    • Nurse, K.1    Wrzesinski, J.2    Bakin, A.3    Lane, B.G.4    Ofengand, J.5
  • 38
    • 0037029086 scopus 로고    scopus 로고
    • Ribosomal RNA pseudouridines and pseudouridine synthases
    • Ofengand, J. 2002. Ribosomal RNA pseudouridines and pseudouridine synthases. FEBS Lett. 514: 17-25.
    • (2002) FEBS Lett. , vol.514 , pp. 17-25
    • Ofengand, J.1
  • 39
    • 0037662639 scopus 로고    scopus 로고
    • Caenorhabditis elegans pseudouridine synthase 1 activity in vivo: tRNA is a substrate but not U2 small nuclear RNA
    • Patton, J.R., and Padgett, R.W. 2003. Caenorhabditis elegans pseudouridine synthase 1 activity in vivo: tRNA is a substrate but not U2 small nuclear RNA. Biochem. J. 372: 595-602.
    • (2003) Biochem. J. , vol.372 , pp. 595-602
    • Patton, J.R.1    Padgett, R.W.2
  • 45
    • 0029313081 scopus 로고
    • A dual-specificity pseudouridine synthase: An Escherichia coli synthase purified and cloned on the basis of its specificity for ψ746 in 23S RNA is also specific for ψ32 in tRNAPhe
    • Wrzesinski, J., Nurse, K., Bakin, A., Lane, B.G., and Ofengand, J. 1995. A dual-specificity pseudouridine synthase: An Escherichia coli synthase purified and cloned on the basis of its specificity for ψ746 in 23S RNA is also specific for ψ32 in tRNAPhe. RNA 1: 437-448.
    • (1995) RNA , vol.1 , pp. 437-448
    • Wrzesinski, J.1    Nurse, K.2    Bakin, A.3    Lane, B.G.4    Ofengand, J.5
  • 46
    • 0036913514 scopus 로고    scopus 로고
    • An H/ACA guide RNA directs U2 pseudouridylation at two different sites in the branchpoint recognition region in Xenopus oocytes
    • Zhao, X., Li, Z.H., Terns, R.M., Terns, M.P., and Yu, Y.T. 2002. An H/ ACA guide RNA directs U2 pseudouridylation at two different sites in the branchpoint recognition region in Xenopus oocytes. RNA 8: 1515-1525.
    • (2002) RNA , vol.8 , pp. 1515-1525
    • Zhao, X.1    Li, Z.H.2    Terns, R.M.3    Terns, M.P.4    Yu, Y.T.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.