-
1
-
-
0014963118
-
A thermophilic, acidophilic mycoplasma isolated from a coal refuse pile
-
G. Darland, T.D. Brock, W. Samsonoff, and S.F. Conti A thermophilic, acidophilic mycoplasma isolated from a coal refuse pile Science 170 1970 1416 1418
-
(1970)
Science
, vol.170
, pp. 1416-1418
-
-
Darland, G.1
Brock, T.D.2
Samsonoff, W.3
Conti, S.F.4
-
2
-
-
0029126358
-
Morphological variation of new Thermoplasma acidophilum isolates from Japanese hot springs
-
M. Yasuda, H. Oyaizu, A. Yamagishi, and T. Oshima Morphological variation of new Thermoplasma acidophilum isolates from Japanese hot springs Appl. Environ. Microbiol. 61 1995 3482 3485
-
(1995)
Appl. Environ. Microbiol.
, vol.61
, pp. 3482-3485
-
-
Yasuda, M.1
Oyaizu, H.2
Yamagishi, A.3
Oshima, T.4
-
4
-
-
0020917218
-
Mycoplasma evolution: A review of the use of ribosomal and transfer RNA nucleotide sequences in the determination of phylogenetic relationships
-
R.T. Walker Mycoplasma evolution: a review of the use of ribosomal and transfer RNA nucleotide sequences in the determination of phylogenetic relationships Yale J. Biol. Med. 56 1983 367 372
-
(1983)
Yale J. Biol. Med.
, vol.56
, pp. 367-372
-
-
Walker, R.T.1
-
5
-
-
0025897378
-
Posttranscriptional modification of tRNA in thermophilic archaea (Archaebacteria)
-
C.G. Edmonds, P.F. Crain, R. Gupta, T. Hashizume, C.H. Hocart, J.A. Kowalak, S.C. Pomerantz, K.O. Stetter, and J.A. McCloskey Posttranscriptional modification of tRNA in thermophilic archaea (Archaebacteria) J. Bacteriol. 173 1991 3138 3148
-
(1991)
J. Bacteriol.
, vol.173
, pp. 3138-3148
-
-
Edmonds, C.G.1
Crain, P.F.2
Gupta, R.3
Hashizume, T.4
Hocart, C.H.5
Kowalak, J.A.6
Pomerantz, S.C.7
Stetter, K.O.8
McCloskey, J.A.9
-
6
-
-
0027191379
-
â̂--15 (2-amino-4,7-dihydro-4-oxo-7-beta-d-ribofuranosyl- 1H-pyrrolo[2,3-d]pyrimidine-5-carboximidamide (archaeosine))
-
â̂--15 (2-amino-4,7-dihydro-4-oxo-7-beta-d- ribofuranosyl-1H-pyrrolo[2,3-d]pyrimidine-5-carboximidamide (archaeosine)) J. Biol. Chem. 268 1993 10076 10086
-
(1993)
J. Biol. Chem.
, vol.268
, pp. 10076-10086
-
-
Gregson, J.M.1
Crain, P.F.2
Edmonds, C.G.3
Gupta, R.4
Hashizume, T.5
Phillipson, D.W.6
McCloskey, J.A.7
-
7
-
-
0021153752
-
Halobacterium volcanii tRNAs. Identification of 41 tRNAs covering all amino acids, and the sequences of 33 class i tRNAs
-
R. Gupta Halobacterium volcanii tRNAs. Identification of 41 tRNAs covering all amino acids, and the sequences of 33 class I tRNAs J. Biol. Chem. 259 1984 9461 9471
-
(1984)
J. Biol. Chem.
, vol.259
, pp. 9461-9471
-
-
Gupta, R.1
-
8
-
-
33644875540
-
MODOMICS: A database of RNA modification pathways
-
S. Dunin-Horkawicz, A. Czerwoniec, M.J. Gajda, M. Feder, H. Grosjean, and J.M. Bujnicki MODOMICS: a database of RNA modification pathways Nucleic Acids Res. 34 2006 D145 149
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. 145-149
-
-
Dunin-Horkawicz, S.1
Czerwoniec, A.2
Gajda, M.J.3
Feder, M.4
Grosjean, H.5
Bujnicki, J.M.6
-
9
-
-
58149191272
-
TRNAdb 2009: Compilation of tRNA sequences and tRNA genes
-
F. Jühling, M. Mörl, R.K. Hartmann, M. Sprinzl, P.F. Stadler, and J. Pütz TRNAdb 2009: compilation of tRNA sequences and tRNA genes Nucleic Acids Res. 37 2009 D159 D162
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Jühling, F.1
Mörl, M.2
Hartmann, R.K.3
Sprinzl, M.4
Stadler, P.F.5
Pütz, J.6
-
10
-
-
77950345305
-
7G46) in tRNA from Thermus thermophilus is required for cell viability through a tRNA modification network
-
7G46) in tRNA from Thermus thermophilus is required for cell viability through a tRNA modification network Nucleic Acids Res. 38 2010 942 957
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 942-957
-
-
Tomikawa, C.1
Yokogawa, T.2
Kanai, T.3
Hori, H.4
-
11
-
-
79953686522
-
Pseudouridine at position 55 in tRNA controls the contents of other modified nucleotides for low-temperature adaptation in the extreme-thermophilic eubacterium Thermus thermophilus
-
K. Ishida, T. Kunibayashi, C. Tomikawa, A. Ochi, T. Kanai, A. Hirata, C. Iwashita, and H. Hori Pseudouridine at position 55 in tRNA controls the contents of other modified nucleotides for low-temperature adaptation in the extreme-thermophilic eubacterium Thermus thermophilus Nucleic Acids Res. 39 2011 2304 2318
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 2304-2318
-
-
Ishida, K.1
Kunibayashi, T.2
Tomikawa, C.3
Ochi, A.4
Kanai, T.5
Hirata, A.6
Iwashita, C.7
Hori, H.8
-
12
-
-
11544339138
-
A specific chemical chain scission of tRNA at 7-methylguanosine
-
W. Wintermeyer, and H.G. Zachau A specific chemical chain scission of tRNA at 7-methylguanosine FEBS Lett. 11 1970 160 164
-
(1970)
FEBS Lett.
, vol.11
, pp. 160-164
-
-
Wintermeyer, W.1
Zachau, H.G.2
-
13
-
-
0016724277
-
Tertiary structure interactions of 7-methylguanosine in yeast tRNA Phe as studied by borohydride reduction
-
W. Wintermeyer, and H.G. Zachau Tertiary structure interactions of 7-methylguanosine in yeast tRNA Phe as studied by borohydride reduction FEBS Lett. 58 1975 306 309
-
(1975)
FEBS Lett.
, vol.58
, pp. 306-309
-
-
Wintermeyer, W.1
Zachau, H.G.2
-
14
-
-
42449110865
-
7G46) methyltransferase (TrmB) stabilizes the dimer structure and enhances fidelity of methylation
-
7G46) methyltransferase (TrmB) stabilizes the dimer structure and enhances fidelity of methylation Proteins 71 2008 1400 1408
-
(2008)
Proteins
, vol.71
, pp. 1400-1408
-
-
Tomikawa, C.1
Ochi, A.2
Hori, H.3
-
15
-
-
68949083484
-
2-guanine)- dimethyltransferase (Trm1) catalyzes transfer of methyl groups not only to guanine 26 but also to guanine 27 in tRNA
-
2-guanine)-dimethyltransferase (Trm1) catalyzes transfer of methyl groups not only to guanine 26 but also to guanine 27 in tRNA J. Biol. Chem. 284 2009 20467 20478
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 20467-20478
-
-
Awai, T.1
Kimura, S.2
Tomikawa, C.3
Ochi, A.4
Ihsanawati5
Bessho, Y.6
Yokoyama, S.7
Ohno, S.8
Nishikawa, K.9
Yokogawa, T.10
Suzuki, T.11
Hori, H.12
-
16
-
-
77951276163
-
Optimization of the hybridization-based method for purification of thermostable tRNAs in the presence of tetraalkylammonium salts
-
T. Yokogawa, Y. Kitamura, D. Nakamura, S. Ohno, and K. Nishikawa Optimization of the hybridization-based method for purification of thermostable tRNAs in the presence of tetraalkylammonium salts Nucleic Acids Res. 38 2010 e89
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 89
-
-
Yokogawa, T.1
Kitamura, Y.2
Nakamura, D.3
Ohno, S.4
Nishikawa, K.5
-
17
-
-
0017822238
-
A different approach to RNA sequencing
-
J. Stanley, and S. Vassilenko A different approach to RNA sequencing Nature 274 1978 87 89
-
(1978)
Nature
, vol.274
, pp. 87-89
-
-
Stanley, J.1
Vassilenko, S.2
-
19
-
-
0028936082
-
Mobilities of modified ribonucleotides on two-dimensional cellulose thin-layer chromatography
-
G. Keith Mobilities of modified ribonucleotides on two-dimensional cellulose thin-layer chromatography Biochimie 77 1995 142 144
-
(1995)
Biochimie
, vol.77
, pp. 142-144
-
-
Keith, G.1
-
20
-
-
34548789633
-
Mass spectrometric identification and characterization of RNA-modifying enzymes
-
T. Suzuki, Y. Ikeuchi, A. Noma, T. Suzuki, and Y. Sakaguchi Mass spectrometric identification and characterization of RNA-modifying enzymes Methods Enzymol. 425 2007 211 229
-
(2007)
Methods Enzymol.
, vol.425
, pp. 211-229
-
-
Suzuki, T.1
Ikeuchi, Y.2
Noma, A.3
Suzuki, T.4
Sakaguchi, Y.5
-
21
-
-
0036884266
-
Detection of pseudouridine and other modifications in tRNA by cyanoethylation and MALDI mass spectrometry
-
J. Mengel-Jorgensen, and F. Kirpekar Detection of pseudouridine and other modifications in tRNA by cyanoethylation and MALDI mass spectrometry Nucleic Acids Res. 30 2002 e135
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 135
-
-
Mengel-Jorgensen, J.1
Kirpekar, F.2
-
22
-
-
29544452864
-
Mechanistic insights into sulfur relay by multiple sulfur mediators involved in thiouridine biosynthesis at tRNA wobble positions
-
Y. Ikeuchi, N. Shigi, J. Kato, A. Nishimura, and T. Suzuki Mechanistic insights into sulfur relay by multiple sulfur mediators involved in thiouridine biosynthesis at tRNA wobble positions Mol. Cell 21 2006 97 108
-
(2006)
Mol. Cell
, vol.21
, pp. 97-108
-
-
Ikeuchi, Y.1
Shigi, N.2
Kato, J.3
Nishimura, A.4
Suzuki, T.5
-
23
-
-
0025360224
-
Eukaryotic tRNAs(Pro): Primary structure of the anticodon loop; Presence of 5-carbamoylmethyluridine or inosine as the first nucleoside of the anticodon
-
G. Keith, J. Desgrès, P. Pochart, T. Heyman, K.C. Kuo, and C.W. Gehrke Eukaryotic tRNAs(Pro): primary structure of the anticodon loop; presence of 5-carbamoylmethyluridine or inosine as the first nucleoside of the anticodon Biochim. Biophys. Acta 1049 1990 255 260
-
(1990)
Biochim. Biophys. Acta
, vol.1049
, pp. 255-260
-
-
Keith, G.1
Desgrès, J.2
Pochart, P.3
Heyman, T.4
Kuo, K.C.5
Gehrke, C.W.6
-
24
-
-
15444371415
-
An early step in wobble uridine tRNA modification requires the elongator complex
-
B. Huang, M.J. Johansson, and A.S. Byström An early step in wobble uridine tRNA modification requires the elongator complex RNA 11 2005 424 436
-
(2005)
RNA
, vol.11
, pp. 424-436
-
-
Huang, B.1
Johansson, M.J.2
Byström, A.S.3
-
25
-
-
79958119986
-
Unexpected accumulation of ncm(5)U and ncm(5)S(2) (U) in a trm9 mutant suggests an additional step in the synthesis of mcm(5)U and mcm(5)S(2)U
-
C. Chen, B. Huang, J.T. Anderson, and A.S. Byström Unexpected accumulation of ncm(5)U and ncm(5)S(2) (U) in a trm9 mutant suggests an additional step in the synthesis of mcm(5)U and mcm(5)S(2)U PLoS ONE 6 2011 e20783
-
(2011)
PLoS ONE
, vol.6
, pp. 20783
-
-
Chen, C.1
Huang, B.2
Anderson, J.T.3
Byström, A.S.4
-
27
-
-
0036795285
-
Two proteins that form a complex are required for 7-methylguanosine modification of yeast tRNA
-
A. Alexandrov, M.R. Martzen, and E.M. Phizicky Two proteins that form a complex are required for 7-methylguanosine modification of yeast tRNA RNA 8 2002 1253 1266
-
(2002)
RNA
, vol.8
, pp. 1253-1266
-
-
Alexandrov, A.1
Martzen, M.R.2
Phizicky, E.M.3
-
28
-
-
0038643071
-
7G46) methyltransferase
-
7G46) methyltransferase J. Bacteriol. 185 2003 3238 3243
-
(2003)
J. Bacteriol.
, vol.185
, pp. 3238-3243
-
-
De Bie, L.G.1
Roovers, M.2
Oudjama, Y.3
Wattiez, R.4
Tricot, C.5
Stalon, V.6
Droogmans, L.7
Bujnicki, J.M.8
-
30
-
-
0034646676
-
Evidence for the transfer of sulfane sulfur from IscS to ThiI during the in vitro biosynthesis of 4-thiouridine in Escherichia coli tRNA
-
R. Kambampati, and C.T. Lauhon Evidence for the transfer of sulfane sulfur from IscS to ThiI during the in vitro biosynthesis of 4-thiouridine in Escherichia coli tRNA J. Biol. Chem. 275 2000 10727 10730
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 10727-10730
-
-
Kambampati, R.1
Lauhon, C.T.2
-
31
-
-
0034733647
-
The iscS gene in Escherichia coli is required for the biosynthesis of 4-thiouridine, thiamin, and NAD
-
C.T. Lauhon, and R. Kambampati The iscS gene in Escherichia coli is required for the biosynthesis of 4-thiouridine, thiamin, and NAD J. Biol. Chem. 275 2000 20096 20103
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 20096-20103
-
-
Lauhon, C.T.1
Kambampati, R.2
-
32
-
-
0034727087
-
The genome sequence of the thermoacidophilic scavenger Thermoplasma acidophilum
-
A. Ruepp, W. Graml, M.L. Santos-Martinez, K.K. Koretke, C. Volker, H.W. Mewes, D. Frishman, S. Stocker, A.N. Lupas, and W. Baumeister The genome sequence of the thermoacidophilic scavenger Thermoplasma acidophilum Nature 407 2000 508 813
-
(2000)
Nature
, vol.407
, pp. 508-813
-
-
Ruepp, A.1
Graml, W.2
Santos-Martinez, M.L.3
Koretke, K.K.4
Volker, C.5
Mewes, H.W.6
Frishman, D.7
Stocker, S.8
Lupas, A.N.9
Baumeister, W.10
-
33
-
-
84868233239
-
Biosynthesis of 4-thiouridine in tRNA in the methanogenic archaeon Methanococcus maripaludis
-
Y. Liu, X. Zhu, A. Nakamura, R. Orlando, D. Söll, and W.B. Whitman Biosynthesis of 4-thiouridine in tRNA in the methanogenic archaeon Methanococcus maripaludis J. Biol. Chem. 287 2012 36683 36692
-
(2012)
J. Biol. Chem.
, vol.287
, pp. 36683-36692
-
-
Liu, Y.1
Zhu, X.2
Nakamura, A.3
Orlando, R.4
Söll, D.5
Whitman, W.B.6
-
34
-
-
79952729890
-
E1- and ubiquitin-like proteins provide a direct link between protein conjugation and sulfur transfer in archaea
-
H.V. Miranda, N. Nembhard, D. Su, N. Hepowit, D.J. Krause, J.R. Pritz, C. Phillips, D. Söll, and J.A. Maupin-Furlow E1- and ubiquitin-like proteins provide a direct link between protein conjugation and sulfur transfer in archaea Proc. Natl. Acad. Sci. USA 108 2011 4417 4422
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 4417-4422
-
-
Miranda, H.V.1
Nembhard, N.2
Su, D.3
Hepowit, N.4
Krause, D.J.5
Pritz, J.R.6
Phillips, C.7
Söll, D.8
Maupin-Furlow, J.A.9
-
35
-
-
0030878532
-
Characterization of thiI, a new gene involved in thiazole biosynthesis in Salmonella typhimurium
-
E. Webb, K. Claas, and D.M. Downs Characterization of thiI, a new gene involved in thiazole biosynthesis in Salmonella typhimurium J. Bacteriol. 179 1997 4399 4402
-
(1997)
J. Bacteriol.
, vol.179
, pp. 4399-4402
-
-
Webb, E.1
Claas, K.2
Downs, D.M.3
-
36
-
-
84857599173
-
Diversity of archaeosine synthesis in Crenarchaeota
-
G. Phillips, M.A. Swairjo, K.W. Gaston, M. Bailly, P.A. Limbach, D. Iwata-Reuyl, and V. de Crécy-Lagard Diversity of archaeosine synthesis in Crenarchaeota ACS Chem. Biol. 7 2012 300 305
-
(2012)
ACS Chem. Biol.
, vol.7
, pp. 300-305
-
-
Phillips, G.1
Swairjo, M.A.2
Gaston, K.W.3
Bailly, M.4
Limbach, P.A.5
Iwata-Reuyl, D.6
De Crécy-Lagard, V.7
-
38
-
-
0345531141
-
Roles of 5-substituents of tRNA wobble uridines in the recognition of purine-ending codons
-
K. Takai, and S. Yokoyama Roles of 5-substituents of tRNA wobble uridines in the recognition of purine-ending codons Nucleic Acids Res. 31 2003 6383 6391
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 6383-6391
-
-
Takai, K.1
Yokoyama, S.2
-
39
-
-
0032814863
-
Characterisation and enzymatic properties of tRNA(guanine 26, N (2), N (2))-dimethyltransferase (Trm1p) from Pyrococcus furiosus
-
F. Constantinesco, Y. Motorin, and H. Grosjean Characterisation and enzymatic properties of tRNA(guanine 26, N (2), N (2))-dimethyltransferase (Trm1p) from Pyrococcus furiosus J. Mol. Biol. 291 1999 375 392
-
(1999)
J. Mol. Biol.
, vol.291
, pp. 375-392
-
-
Constantinesco, F.1
Motorin, Y.2
Grosjean, H.3
-
40
-
-
22244492008
-
The Cm56 tRNA modification in archaea is catalyzed either by a specific 2′-O-methylase, or a C/D sRNP
-
M.H. Renalier, N. Joseph, C. Gaspin, P. Thebault, and A. Mougin The Cm56 tRNA modification in archaea is catalyzed either by a specific 2′-O-methylase, or a C/D sRNP RNA 11 2005 1051 1063
-
(2005)
RNA
, vol.11
, pp. 1051-1063
-
-
Renalier, M.H.1
Joseph, N.2
Gaspin, C.3
Thebault, P.4
Mougin, A.5
-
41
-
-
34748874591
-
Distinct determinants of tRNA recognition by the TrmD and Trm5 methyl transferases
-
T. Christian, and Y.M. Hou Distinct determinants of tRNA recognition by the TrmD and Trm5 methyl transferases J. Mol. Biol. 373 2007 623 632
-
(2007)
J. Mol. Biol.
, vol.373
, pp. 623-632
-
-
Christian, T.1
Hou, Y.M.2
-
42
-
-
79959311751
-
Pseudouridine formation in archaeal RNAs: The case of Haloferax volcanii
-
I.K. Blaby, M. Majumder, K. Chatterjee, S. Jana, H. Grosjean, V. de Crécy-Lagard, and R. Gupta Pseudouridine formation in archaeal RNAs: The case of Haloferax volcanii RNA 17 2011 1367 1380
-
(2011)
RNA
, vol.17
, pp. 1367-1380
-
-
Blaby, I.K.1
Majumder, M.2
Chatterjee, K.3
Jana, S.4
Grosjean, H.5
De Crécy-Lagard, V.6
Gupta, R.7
|