메뉴 건너뛰기




Volumn 4, Issue 11, 2014, Pages

Genetic networks governing heart development

Author keywords

[No Author keywords available]

Indexed keywords

BONE MORPHOGENETIC PROTEIN; FIBROBLAST GROWTH FACTOR; MESSENGER RNA; MICRORNA; NUCLEAR RNA; RNA POLYMERASE II; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR GATA 4; TRANSCRIPTION FACTOR NKX2.5; UNTRANSLATED RNA;

EID: 84923931488     PISSN: None     EISSN: 21571422     Source Type: Journal    
DOI: 10.1101/cshperspect.a013839     Document Type: Article
Times cited : (45)

References (131)
  • 1
    • 84893285442 scopus 로고    scopus 로고
    • Machine learning classification of cell-specific cardiac enhancers uncovers developmental subnetworks regulating progenitor cell division and cell fate specification
    • Ahmad SM, Busser BW, Huang D, Cozart EJ, Michaud S, Zhu X, Jeffries N, Aboukhalil A, Bulyk ML, Ovcharenko I, et al. 2014. Machine learning classification of cell-specific cardiac enhancers uncovers developmental subnetworks regulating progenitor cell division and cell fate specification. Development 141: 878–888.
    • (2014) Development , vol.141 , pp. 878-888
    • Ahmad, S.M.1    Busser, B.W.2    Huang, D.3    Cozart, E.J.4    Michaud, S.5    Zhu, X.6    Jeffries, N.7    Aboukhalil, A.8    Bulyk, M.L.9    Ovcharenko, I.10
  • 2
    • 34249079154 scopus 로고    scopus 로고
    • Network motifs: Theory and experimental approaches
    • Alon U. 2007. Network motifs: Theory and experimental approaches. Nat Rev Genet 8: 450–461.
    • (2007) Nat Rev Genet , vol.8 , pp. 450-461
    • Alon, U.1
  • 4
    • 0038483826 scopus 로고    scopus 로고
    • Emergence of scaling in random networks
    • Barabasi AL, Albert R. 1999. Emergence of scaling in random networks. Science 286: 509–512.
    • (1999) Science , vol.286 , pp. 509-512
    • Barabasi, A.L.1    Albert, R.2
  • 5
    • 0038513959 scopus 로고    scopus 로고
    • Scale-free networks
    • Barabasi AL, Bonabeau E. 2003. Scale-free networks. Sci Am 288: 60–69.
    • (2003) Sci Am , vol.288 , pp. 60-69
    • Barabasi, A.L.1    Bonabeau, E.2
  • 6
    • 0037093507 scopus 로고    scopus 로고
    • Three habits of highly effective signaling pathways: Principles of transcriptional control by developmental cell signaling
    • Barolo S, Posakony JW. 2002. Three habits of highly effective signaling pathways: Principles of transcriptional control by developmental cell signaling. Genes Dev 16: 1167–1181.
    • (2002) Genes Dev , vol.16 , pp. 1167-1181
    • Barolo, S.1    Posakony, J.W.2
  • 8
    • 77951181560 scopus 로고    scopus 로고
    • Apurified population of multipotent cardiovascular progenitors derived from primate pluripotent stem cells en engrafts in postmyocardial infarcted nonhuman primates
    • Blin G, Nury D, Stefanovic S, Neri T, Guillevic O, Brinon B, Bellamy V, Rucker-Martin C, Barbry P, Bel A, et al. 2010. Apurified population of multipotent cardiovascular progenitors derived from primate pluripotent stem cells en engrafts in postmyocardial infarcted nonhuman primates. J Clin Invest 120: 1125–1139.
    • (2010) J Clin Invest , vol.120 , pp. 1125-1139
    • Blin, G.1    Nury, D.2    Stefanovic, S.3    Neri, T.4    Guillevic, O.5    Brinon, B.6    Bellamy, V.7    Rucker-Martin, C.8    Barbry, P.9    Bel, A.10
  • 10
    • 84904640712 scopus 로고    scopus 로고
    • Re-activated adult epicardial progenitor cells are a heterogeneous population molecularly distinct from their embryonic counterparts
    • Bollini S, Vieira JM, Howard S, Dube KN, Balmer GM, Smart N, Riley PR. 2014. Re-activated adult epicardial progenitor cells are a heterogeneous population molecularly distinct from their embryonic counterparts. Stem Cells Dev doi: 10.1089/scd.2014.0019.
    • (2014) Stem Cells Dev
    • Bollini, S.1    Vieira, J.M.2    Howard, S.3    Dube, K.N.4    Balmer, G.M.5    Smart, N.6    Riley, P.R.7
  • 11
    • 0042424655 scopus 로고    scopus 로고
    • Transcriptional regulatory cascades in development: Initial rates, not steady state, determine network kinetics
    • Bolouri H, Davidson EH. 2003. Transcriptional regulatory cascades in development: Initial rates, not steady state, determine network kinetics. Proc Natl Acad Sci 100: 9371–9376.
    • (2003) Proc Natl Acad Sci , vol.100 , pp. 9371-9376
    • Bolouri, H.1    Davidson, E.H.2
  • 15
    • 0014690698 scopus 로고
    • Gene regulation for higher cells: A theory
    • Britten RJ, Davidson EH. 1969. Gene regulation for higher cells: A theory. Science 165: 349–357.
    • (1969) Science , vol.165 , pp. 349-357
    • Britten, R.J.1    Davidson, E.H.2
  • 16
    • 1642402120 scopus 로고    scopus 로고
    • The cardiac determination factor, Nkx2-5, is activated by mutual cofactors GATA-4 and Smad1/4 via a novel upstream enhancer
    • Brown CO 3rd, Chi X, Garcia-Gras E, Shirai M, Feng XH, Schwartz RJ. 2004. The cardiac determination factor, Nkx2-5, is activated by mutual cofactors GATA-4 and Smad1/4 via a novel upstream enhancer. J Biol Chem 279: 10659–10669.
    • (2004) J Biol Chem , vol.279 , pp. 10659-10669
    • Brown, C.O.1    Chi, X.2    Garcia-Gras, E.3    Shirai, M.4    Feng, X.H.5    Schwartz, R.J.6
  • 17
    • 58549102473 scopus 로고    scopus 로고
    • Toward a systemslevel understanding of developmental regulatory networks
    • Busser BW, Bulyk ML, Michelson AM. 2008. Toward a systemslevel understanding of developmental regulatory networks. Curr Opin Genet Dev 18: 521–529.
    • (2008) Curr Opin Genet Dev , vol.18 , pp. 521-529
    • Busser, B.W.1    Bulyk, M.L.2    Michelson, A.M.3
  • 18
    • 0037090983 scopus 로고    scopus 로고
    • Reciprocal regulatory interactions between the Notch and Ras signaling pathways in the Drosophila embryonic mesoderm
    • Carmena A, Buff E, Halfon MS, Gisselbrecht S, Jimenez F, Baylies MK, Michelson AM. 2002. Reciprocal regulatory interactions between the Notch and Ras signaling pathways in the Drosophila embryonic mesoderm. Dev Biol 244: 226–242.
    • (2002) Dev Biol , vol.244 , pp. 226-242
    • Carmena, A.1    Buff, E.2    Halfon, M.S.3    Gisselbrecht, S.4    Jimenez, F.5    Baylies, M.K.6    Michelson, A.M.7
  • 21
    • 84904746972 scopus 로고    scopus 로고
    • Somatic cell reprogramming into cardiovascular lineages
    • Chen JX, Plonowska K, Wu SM. 2014. Somatic cell reprogramming into cardiovascular lineages. J Cardiovasc Pharmacol doi: 10.1177/1074248414527641.
    • (2014) J Cardiovasc Pharmacol
    • Chen, J.X.1    Plonowska, K.2    Wu, S.M.3
  • 22
    • 84892474589 scopus 로고    scopus 로고
    • Polycomb silencing: From linear chromatin domains to 3D chromosome folding
    • Cheutin T, Cavalli G. 2014. Polycomb silencing: From linear chromatin domains to 3D chromosome folding. Curr Opin Genet Dev 25C: 30–37.
    • (2014) Curr Opin Genet Dev , vol.25 , pp. 30-37
    • Cheutin, T.1    Cavalli, G.2
  • 24
    • 63349083026 scopus 로고    scopus 로고
    • Spatiotemporal intersection of Lhx3 and Tbx6 defines the cardiac field through synergistic activation ofMesp
    • Christiaen L, Stolfi A, Davidson B, Levine M. 2009. Spatiotemporal intersection of Lhx3 and Tbx6 defines the cardiac field through synergistic activation ofMesp. Dev Biol 328: 552–560.
    • (2009) Dev Biol , vol.328 , pp. 552-560
    • Christiaen, L.1    Stolfi, A.2    Davidson, B.3    Levine, M.4
  • 25
    • 80054756754 scopus 로고    scopus 로고
    • Genomic maps of long noncodingRNAoccupancy reveal principles of RNA-chromatin interactions
    • Chu C, Qu K, Zhong FL, Artandi SE, Chang HY. 2011. Genomic maps of long noncodingRNAoccupancy reveal principles of RNA-chromatin interactions. Mol Cell 44: 667–678.
    • (2011) Mol Cell , vol.44 , pp. 667-678
    • Chu, C.1    Qu, K.2    Zhong, F.L.3    Artandi, S.E.4    Chang, H.Y.5
  • 26
    • 42149159492 scopus 로고    scopus 로고
    • Wnt signaling: An essential regulator of cardiovascular differentiation, morphogenesis and progenitor self-renewal
    • Cohen ED, Tian Y, Morrisey EE. 2008. Wnt signaling: An essential regulator of cardiovascular differentiation, morphogenesis and progenitor self-renewal. Development 135: 789–798.
    • (2008) Development , vol.135 , pp. 789-798
    • Cohen, E.D.1    Tian, Y.2    Morrisey, E.E.3
  • 27
    • 34249753618 scopus 로고
    • Support-vector networks
    • Kluwer Academic, Hingham, MA
    • Cortes C, Vapnik V. 1995. Support-vector networks. In Machine learning, pp. 273–297. Kluwer Academic, Hingham, MA.
    • (1995) Machine Learning , pp. 273-297
    • Cortes, C.1    Vapnik, V.2
  • 28
    • 80052511434 scopus 로고    scopus 로고
    • The T-box transcription factor Eomesodermin acts upstream of Mesp1 to specify cardiac mesoderm during mouse gastrulation
    • Costello I, Pimeisl IM, Drager S, Bikoff EK, Robertson EJ, Arnold SJ. 2011. The T-box transcription factor Eomesodermin acts upstream of Mesp1 to specify cardiac mesoderm during mouse gastrulation. Nat Cell Biol 13: 1084–1091.
    • (2011) Nat Cell Biol , vol.13 , pp. 1084-1091
    • Costello, I.1    Pimeisl, I.M.2    Drager, S.3    Bikoff, E.K.4    Robertson, E.J.5    Arnold, S.J.6
  • 29
  • 30
    • 32444446240 scopus 로고    scopus 로고
    • Gene regulatory networks and the evolution of animal body plans
    • Davidson EH, Erwin DH. 2006. Gene regulatory networks and the evolution of animal body plans. Science 311: 796–800.
    • (2006) Science , vol.311 , pp. 796-800
    • Davidson, E.H.1    Erwin, D.H.2
  • 33
    • 4544236360 scopus 로고    scopus 로고
    • Mef2c is a direct transcriptional target of ISL1 and GATA factors in the anterior heart field during mou e embryonic development
    • Dodou E, Verzi MP, Anderson JP, Xu SM, Black BL. 2004. Mef2c is a direct transcriptional target of ISL1 and GATA factors in the anterior heart field during mou e embryonic development. Development 131: 3931–3942.
    • (2004) Development , vol.131 , pp. 3931-3942
    • Dodou, E.1    Verzi, M.P.2    Erson, J.P.3    Xu, S.M.4    Black, B.L.5
  • 34
    • 84858822989 scopus 로고    scopus 로고
    • NK-2 class homeodomain proteins: Conserved regulator of cardiogenesis
    • (ed. Rosenthal N, Harvey RP, Elsevier, New York
    • Elliott DA, Kirk EP, Schaft D, Harvey RP. 2010. NK-2 class homeodomain proteins: Conserved regulator of cardiogenesis. In Heart development and regeneration (ed. Rosenthal N, Harvey RP), pp. 569–597. Elsevier, New York.
    • (2010) Heart Development and Regeneration , pp. 569-597
    • Elliott, D.A.1    Kirk, E.P.2    Schaft, D.3    Harvey, R.P.4
  • 36
    • 65349097905 scopus 로고    scopus 로고
    • Stem cell states, fates, and the rules of attraction
    • Enver T, Pera M, Peterson C, Andrews PW. 2009. Stem cell states, fates, and the rules of attraction. Cell Stem Cell 4: 387–397.
    • (2009) Cell Stem Cell , vol.4 , pp. 387-397
    • Enver, T.1    Pera, M.2    Peterson, C.3    Rews, P.W.4
  • 37
    • 84896713460 scopus 로고    scopus 로고
    • Subtle changes in motif positioning cause tissue-specific effects on robustness of an enhancer’s activity
    • Erceg J, Saunders TE, Girardot C, Devos DP, Hufnagel L, Furlong EE. 2014. Subtle changes in motif positioning cause tissue-specific effects on robustness of an enhancer’s activity. PLoS Genet 10: e1004060.
    • (2014) Plos Genet , vol.10
    • Erceg, J.1    Saunders, T.E.2    Girardot, C.3    Devos, D.P.4    Hufnagel, L.5    Furlong, E.E.6
  • 38
    • 78650747491 scopus 로고    scopus 로고
    • Discovery and characterization of chromatin states for systematic annotation of the human genome
    • Ernst J, Kellis M. 2010. Discovery and characterization of chromatin states for systematic annotation of the human genome. Nat Biotechnol 28: 817–825.
    • (2010) Nat Biotechnol , vol.28 , pp. 817-825
    • Ernst, J.1    Kellis, M.2
  • 39
    • 84897406127 scopus 로고    scopus 로고
    • A promoter-level mammalian expression atlas
    • Fantom Consortium
    • Fantom Consortium. 2014. A promoter-level mammalian expression atlas. Nature 507: 462–470.
    • (2014) Nature , vol.507 , pp. 462-470
  • 40
    • 0842288337 scopus 로고    scopus 로고
    • Inferring cellular networks using probabilistic graphical models
    • Friedman N. 2004. Inferring cellular networks using probabilistic graphical models. Science 303: 799–805.
    • (2004) Science , vol.303 , pp. 799-805
    • Friedman, N.1
  • 41
    • 0000608460 scopus 로고
    • Genetic control of wing disc development in Drosophila
    • (ed. Porter R, Rivers J),Wiley, Chichester,UK
    • Garcia-Bellido A. 1975. Genetic control of wing disc development in Drosophila. In Ciba Foundation Symposium 29—Cell patterning (ed. Porter R, Rivers J),Wiley, Chichester,UK.
    • (1975) Ciba Foundation Symposium 29—Cell Patterning
    • Garcia-Bellido, A.1
  • 44
    • 0024240796 scopus 로고
    • A community effect in animal development
    • Gurdon JB. 1988. A community effect in animal development. Nature 336: 772–774.
    • (1988) Nature , vol.336 , pp. 772-774
    • Gurdon, J.B.1
  • 46
    • 79751473406 scopus 로고    scopus 로고
    • Chromatin remodeling in cardiovascular development and physiology
    • Han P, Hang CT, Yang J, Chang CP. 2011. Chromatin remodeling in cardiovascular development and physiology. Circ Res 108: 378–396.
    • (2011) Circ Res , vol.108 , pp. 378-396
    • Han, P.1    Hang, C.T.2    Yang, J.3    Chang, C.P.4
  • 48
    • 79955027617 scopus 로고    scopus 로고
    • Co-occupancy by multiple cardiac transcription factors identifies transcriptional enhancers active in heart
    • He A, Kong SW, Ma Q, Pu WT. 2011. Co-occupancy by multiple cardiac transcription factors identifies transcriptional enhancers active in heart. Proc Natl Acad Sci 108: 5632–5637.
    • (2011) Proc Natl Acad Sci , vol.108 , pp. 5632-5637
    • He, A.1    Kong, S.W.2    Ma, Q.3    Pu, W.T.4
  • 49
    • 84867026877 scopus 로고    scopus 로고
    • A boolean model of the cardiac gene regulatory network determining first and second heart field identity
    • Herrmann F, Gross A, Zhou D, Kestler HA, Kuhl M. 2012. A boolean model of the cardiac gene regulatory network determining first and second heart field identity. PLoS ONE 7: 46798.
    • (2012) Plos ONE , vol.7
    • Herrmann, F.1    Gross, A.2    Zhou, D.3    Kestler, H.A.4    Kuhl, M.5
  • 50
    • 77951212392 scopus 로고    scopus 로고
    • Targeted deletion of Hand2 in cardiac neural crest-derived cells influences cardiac gene expression and outflow tract development
    • Holler KL, Hendershot TJ, Troy SE, Vincentz JW, Firulli AB, Howard MJ. 2010. Targeted deletion of Hand2 in cardiac neural crest-derived cells influences cardiac gene expression and outflow tract development. Dev Biol 341: 291-304.
    • (2010) Dev Biol , vol.341 , pp. 291-304
    • Holler, K.L.1    Hendershot, T.J.2    Troy, S.E.3    Vincentz, J.W.4    Firulli, A.B.5    Howard, M.J.6
  • 55
    • 84873486967 scopus 로고    scopus 로고
    • Genome-wide screens for in vivo Tin-man binding sites identify cardiac enhancers with diverse functional architectures
    • Jin H, Stojnic R, Adryan B, Ozdemir A, Stathopoulos A, Frasch M. 2013. Genome-wide screens for in vivo Tin-man binding sites identify cardiac enhancers with diverse functional architectures. PLoS Genet 9: e1003195.
    • (2013) Plos Genet , vol.9 , pp. 1003195
    • Jin, H.1    Stojnic, R.2    Adryan, B.3    Ozdemir, A.4    Stathopoulos, A.5    Frasch, M.6
  • 56
    • 36849093461 scopus 로고    scopus 로고
    • Genome-wide view of cell fate specification: Ladybird acts at multiple levels during diversification of muscle and heart precursors
    • Junion G, Bataille L, Jagla T, Da Ponte JP, Tapin R, Jagla K. 2007. Genome-wide view of cell fate specification: Ladybird acts at multiple levels during diversification of muscle and heart precursors. Genes Dev 21: 3163–3180.
    • (2007) Genes Dev , vol.21 , pp. 3163-3180
    • Junion, G.1    Bataille, L.2    Jagla, T.3    Da Ponte, J.P.4    Tapin, R.5    Jagla, K.6
  • 57
    • 84856704764 scopus 로고    scopus 로고
    • A transcription factor collective defines cardiac cell fate and reflects lineage history
    • Junion G, Spivakov M, Girardot C, Braun M, Gustafson EH, Birney E, Furlong EEM. 2012. A transcription factor collective defines cardiac cell fate and reflects lineage history. Cell 148: 473–486.
    • (2012) Cell , vol.148 , pp. 473-486
    • Junion, G.1    Spivakov, M.2    Girardot, C.3    Braun, M.4    Gustafson, E.H.5    Birney, E.6    Furlong, E.7
  • 58
    • 0014489272 scopus 로고
    • Metabolic stability and epigenesis in randomly constructed genetic nets
    • Kauffman SA. 1969. Metabolic stability and epigenesis in randomly constructed genetic nets. J Theor Biol 22: 437–467.
    • (1969) J Theor Biol , vol.22 , pp. 437-467
    • Kauffman, S.A.1
  • 60
    • 0347765651 scopus 로고    scopus 로고
    • Information display by transcriptional enhancers
    • Kulkarni MM, Arnosti DN. 2003. Information display by transcriptional enhancers. Development 130: 6569–6575.
    • (2003) Development , vol.130 , pp. 6569-6575
    • Kulkarni, M.M.1    Arnosti, D.N.2
  • 62
    • 84863477017 scopus 로고    scopus 로고
    • Understanding cardiovascular disease: A journey through the genome (and what we found there)
    • Lara-Pezzi E, Dopazo A, Manzanares M. 2012. Understanding cardiovascular disease: A journey through the genome (and what we found there). Dis Model Mech 5: 434–443.
    • (2012) Dis Model Mech , vol.5 , pp. 434-443
    • Lara-Pezzi, E.1    Dopazo, A.2    Manzanares, M.3
  • 63
    • 11244306331 scopus 로고    scopus 로고
    • Endocardial and epicardial derived FGF signals regulate myocardial proliferation and differentiation in vivo
    • Lavine KJ, Yu K, White AC, Zhang X, Smith C, Partanen J, Ornitz DM. 2005. Endocardial and epicardial derived FGF signals regulate myocardial proliferation and differentiation in vivo. Dev Cell 8: 85–95.
    • (2005) Dev Cell , vol.8 , pp. 85-95
    • Lavine, K.J.1    Yu, K.2    White, A.C.3    Zhang, X.4    Smith, C.5    Partanen, J.6    Ornitz, D.M.7
  • 64
    • 0034795804 scopus 로고    scopus 로고
    • The transcription factor GATA4 is activated by extracellular signal-regulated kinase 1and 2-mediated phosphorylation of serine 105 in cardiomyocytes
    • Liang Q, Wiese RJ, Bueno OF, Dai YS, Markham BE, Molkentin JD. 2001. The transcription factor GATA4 is activated by extracellular signal-regulated kinase 1and 2-mediated phosphorylation of serine 105 in cardiomyocytes. Mol Cell Biol 21: 7460–7469.
    • (2001) Mol Cell Biol , vol.21 , pp. 7460-7469
    • Liang, Q.1    Wiese, R.J.2    Bueno, O.F.3    Dai, Y.S.4    Markham, B.E.5    Molkentin, J.D.6
  • 66
    • 0036777881 scopus 로고    scopus 로고
    • Molecular mechanisms of selector gene function and evolution
    • Mann RS, Carroll SB. 2002. Molecular mechanisms of selector gene function and evolution. Curr Opin Genet Dev 2: 592–600.
    • (2002) Curr Opin Genet Dev , vol.2 , pp. 592-600
    • Mann, R.S.1    Carroll, S.B.2
  • 67
    • 79960123564 scopus 로고    scopus 로고
    • Epigenetics in disease: Leader or follower?
    • Martin DI, Cropley JE, Suter CM. 2011. Epigenetics in disease: Leader or follower? Epigenetics 6: 843–848.
    • (2011) Epigenetics , vol.6 , pp. 843-848
    • Martin, D.I.1    Cropley, J.E.2    Suter, C.M.3
  • 70
    • 34247329773 scopus 로고    scopus 로고
    • The genetics of brain wiring: From molecule to mind
    • Mitchell KJ. 2007. The genetics of brain wiring: From molecule to mind. PLoS Biol 5: e113.
    • (2007) Plos Biol , vol.5 , pp. 113
    • Mitchell, K.J.1
  • 71
    • 84901004299 scopus 로고    scopus 로고
    • The rise of regulatory RNA
    • Morris KV, Mattick JS. 2014. The rise of regulatory RNA. Nat Rev Genet 15: 423–437.
    • (2014) Nat Rev Genet , vol.15 , pp. 423-437
    • Morris, K.V.1    Mattick, J.S.2
  • 75
    • 67650461956 scopus 로고    scopus 로고
    • A histone H3 lysine 36 trimethyltransferase links Nkx2-5 toWolf–Hirschhorn syndrome
    • Nimura K, Ura K, Shiratori H, Ikawa M, Okabe M, Schwartz RJ, Kaneda Y. 2009. A histone H3 lysine 36 trimethyltransferase links Nkx2-5 toWolf–Hirschhorn syndrome. Nature 460: 287–291.
    • (2009) Nature , vol.460 , pp. 287-291
    • Nimura, K.1    Ura, K.2    Shiratori, H.3    Ikawa, M.4    Okabe, M.5    Schwartz, R.J.6    Kaneda, Y.7
  • 76
    • 79251616707 scopus 로고    scopus 로고
    • Cardiopoietic factors: Extracellular signals for cardiac lineage commitment
    • Noseda M, Peterkin T, Simoes FC, Patient R, SchneiderMD. 2011. Cardiopoietic factors: Extracellular signals for cardiac lineage commitment. Circ Res 108: 129–152.
    • (2011) Circ Res , vol.108 , pp. 129-152
    • Noseda, M.1    Peterkin, T.2    Simoes, F.C.3    Patient, R.4
  • 77
    • 43149086112 scopus 로고    scopus 로고
    • Global regulatory logic for specification of an embryonic cell lineage
    • Oliveri P, Tu Q, Davidson EH. 2008. Global regulatory logic for specification of an embryonic cell lineage. Proc Natl Acad Sci 105: 5955–5962.
    • (2008) Proc Natl Acad Sci , vol.105 , pp. 5955-5962
    • Oliveri, P.1    Tu, Q.2    Davidson, E.H.3
  • 78
    • 33749361499 scopus 로고    scopus 로고
    • Gene regulatory networks in the evolution and development of the heart
    • Olson EN. 2006. Gene regulatory networks in the evolution and development of the heart. Science 313: 1922–1927.
    • (2006) Science , vol.313 , pp. 1922-1927
    • Olson, E.N.1
  • 79
    • 79958252915 scopus 로고    scopus 로고
    • Chromatin connections to pluripotency and cellular reprogramming
    • Orkin SH, Hochedlinger K. 2011. Chromatin connections to pluripotency and cellular reprogramming. Cell 145: 835–850.
    • (2011) Cell , vol.145 , pp. 835-850
    • Orkin, S.H.1    Hochedlinger, K.2
  • 81
    • 84901911389 scopus 로고    scopus 로고
    • Missing links in cardiology: Long non-coding RNAs enter the arena
    • Peters T, Schroen B. 2014. Missing links in cardiology: Long non-coding RNAs enter the arena. Pflugers Arch 466: 1177–1187.
    • (2014) Pflugers Arch , vol.466 , pp. 1177-1187
    • Peters, T.1    Schroen, B.2
  • 83
    • 84878053118 scopus 로고    scopus 로고
    • MicroRNAs in cardiac development and regeneration
    • Porrello ER. 2013. microRNAs in cardiac development and regeneration. Clin Sci 125: 151–166.
    • (2013) Clin Sci , vol.125 , pp. 151-166
    • Porrello, E.R.1
  • 85
    • 79960258642 scopus 로고    scopus 로고
    • Tinman/Nkx2-5 acts via miR-1 and upstream of Cdc42 to regulate heart function across species
    • Qian L, Wythe JD, Liu J, Cartry J, Vogler G, Mohapatra B, Otway RT, Huang Y, King IN,Maillet M, et al. 2011. Tinman/Nkx2-5 acts via miR-1 and upstream of Cdc42 to regulate heart function across species. J Cell Biol 193: 1181–1196.
    • (2011) J Cell Biol , vol.193 , pp. 1181-1196
    • Qian, L.1    Wythe, J.D.2    Liu, J.3    Cartry, J.4    Vogler, G.5    Mohapatra, B.6    Otway, R.T.7    Huang, Y.8
  • 86
    • 84455200582 scopus 로고    scopus 로고
    • Combinatorial patterning of chromatin regulators uncovered by genome-wide location analysis in human cells
    • Ram O, Goren A, Amit I, Shoresh N, Yosef N, Ernst J, Kellis M, Gymrek M, Issner R, Coyne M, et al. 2011. Combinatorial patterning of chromatin regulators uncovered by genome-wide location analysis in human cells. Cell 147: 1628–1639.
    • (2011) Cell , vol.147 , pp. 1628-1639
    • Ram, O.1    Goren, A.2    Amit, I.3    Shoresh, N.4    Yosef, N.5    Ernst, J.6    Kellis, M.7    Gymrek, M.8    Issner, R.9    Coyne, M.10
  • 88
    • 50249120695 scopus 로고    scopus 로고
    • GATA4 is a direct transcriptional activator of cyclin D2 and Cdk4 and is required for cardiomyocyte proliferation in anterior heart field-derived myocardium
    • Rojas A, Kong SW, Agarwal P, Gilliss B, Pu WT, Black BL. 2008. GATA4 is a direct transcriptional activator of cyclin D2 and Cdk4 and is required for cardiomyocyte proliferation in anterior heart field-derived myocardium. Mol Cell Biol 28: 5420–5431.
    • (2008) Mol Cell Biol , vol.28 , pp. 5420-5431
    • Rojas, A.1    Kong, S.W.2    Agarwal, P.3    Gilliss, B.4    Pu, W.T.5    Black, B.L.6
  • 90
    • 33646858607 scopus 로고    scopus 로고
    • A temporal map of transcription factor activity: Mef2 directly regulates target genes at all stages of muscle development
    • Sandmann T, Jensen LJ, Jakobsen JS, Karzynski MM, Eichenlaub MP, Bork P, Furlong EE. 2006. A temporal map of transcription factor activity: mef2 directly regulates target genes at all stages of muscle development. Dev Cell 10: 797–807.
    • (2006) Dev Cell , vol.10 , pp. 797-807
    • Sandmann, T.1    Jensen, L.J.2    Jakobsen, J.S.3    Karzynski, M.M.4    Eichenlaub, M.P.5    Bork, P.6    Furlong, E.E.7
  • 91
    • 76249093896 scopus 로고    scopus 로고
    • Tabin CJ. 2010. miRNA-processing enzyme Dicer is necessary for cardiac outflow tract alignment and chamber septation
    • Saxena A, Tabin CJ. 2010. miRNA-processing enzyme Dicer is necessary for cardiac outflow tract alignment and chamber septation. Proc Natl Acad Sci 107: 87–91.
    • Proc Natl Acad Sci , vol.107 , pp. 87-91
    • Saxena, A.1
  • 92
    • 84873863863 scopus 로고    scopus 로고
    • Transcriptional regulation patterns revealed by high resolution chromatin immunoprecipitation during cardiac hypertrophy
    • Sayed D, He M, Yang Z, Lin L, Abdellatif M. 2013. Transcriptional regulation patterns revealed by high resolution chromatin immunoprecipitation during cardiac hypertrophy. J Biol Chem 288: 2546–2558.
    • (2013) J Biol Chem , vol.288 , pp. 2546-2558
    • Sayed, D.1    He, M.2    Yang, Z.3    Lin, L.4    Abdellatif, M.5
  • 94
    • 34547482623 scopus 로고    scopus 로고
    • Vessel and blood specification override cardiac potential in anterior mesoderm
    • Schoenebeck JJ, Keegan BR, Yelon D. 2007. Vessel and blood specification override cardiac potential in anterior mesoderm. Dev Cell 13: 254–267.
    • (2007) Dev Cell , vol.13 , pp. 254-267
    • Schoenebeck, J.J.1    Keegan, B.R.2    Yelon, D.3
  • 97
    • 79960192126 scopus 로고    scopus 로고
    • Fgf differentially controls cross-antagonism between cardiac and haemangioblast regulators
    • Simoes FC, Peterkin T, Patient R. 2011. Fgf differentially controls cross-antagonism between cardiac and haemangioblast regulators. Development 138: 3235–3245.
    • (2011) Development , vol.138 , pp. 3235-3245
    • Simoes, F.C.1    Peterkin, T.2    Patient, R.3
  • 99
    • 84895887720 scopus 로고    scopus 로고
    • Enhancer biology and enhanceropathies
    • Smith E, Shilatifard A. 2014. Enhancer biology and enhanceropathies. Nat Struct Mol Biol 21: 210–219.
    • (2014) Nat Struct Mol Biol , vol.21 , pp. 210-219
    • Smith, E.1    Shilatifard, A.2
  • 101
    • 79960015656 scopus 로고    scopus 로고
    • Systems biology approaches to heart development and congenital heart disease
    • Sperling SR. 2011. Systems biology approaches to heart development and congenital heart disease. Cardiovasc Res 91: 269–278.
    • (2011) Cardiovasc Res , vol.91 , pp. 269-278
    • Sperling, S.R.1
  • 102
    • 84865249952 scopus 로고    scopus 로고
    • Transcription factors: From enhancer binding to developmental control
    • Spitz F, Furlong EE. 2012. Transcription factors: From enhancer binding to developmental control. Nat Rev Genetics 13: 613–626.
    • (2012) Nat Rev Genetics , vol.13 , pp. 613-626
    • Spitz, F.1    Furlong, E.E.2
  • 104
  • 106
    • 0019796926 scopus 로고
    • A homeotic mutation transforming leg to antenna in Drosophila
    • Struhl G. 1981. A homeotic mutation transforming leg to antenna in Drosophila. Nature 292: 635–638.
    • (1981) Nature , vol.292 , pp. 635-638
    • Struhl, G.1
  • 107
    • 33847698971 scopus 로고    scopus 로고
    • The relationship between non-protein-coding DNA and eukaryotic complexity
    • Taft RJ, Pheasant M, Mattick JS. 2007. The relationship between non-protein-coding DNA and eukaryotic complexity. BioEssays 29: 288–299.
    • (2007) Bioessays , vol.29 , pp. 288-299
    • Taft, R.J.1    Pheasant, M.2    Mattick, J.S.3
  • 109
    • 33747195353 scopus 로고    scopus 로고
    • Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors
    • Takahashi K, Yamanaka S. 2006. Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors. Cell 126: 663–676.
    • (2006) Cell , vol.126 , pp. 663-676
    • Takahashi, K.1    Yamanaka, S.2
  • 110
    • 0024294014 scopus 로고
    • MyoD1: A nuclear phosphoprotein requiring a Myc homology region to convert fibroblasts to myoblasts
    • Tapscott SJ, Davis RL, Thayer MJ, Cheng PF, Weintraub H, Lassar AB. 1988. MyoD1: A nuclear phosphoprotein requiring a Myc homology region to convert fibroblasts to myoblasts. Science 242: 405–411.
    • (1988) Science , vol.242 , pp. 405-411
    • Tapscott, S.J.1    Davis, R.L.2    Thayer, M.J.3    Cheng, P.F.4    Weintraub, H.5    Lassar, A.B.6
  • 111
    • 85194972808 scopus 로고    scopus 로고
    • Regression shrinkage and selection via the lasso
    • Tibshirani R. 1996. Regression shrinkage and selection via the lasso. J R Stat Soc 58: 267–288.
    • (1996) J R Stat Soc , vol.58 , pp. 267-288
    • Tibshirani, R.1
  • 112
    • 84878365247 scopus 로고    scopus 로고
    • A unified model for left-right asymmetry? Comparison and synthesis of molecular models of embryonic laterality
    • Vandenberg LN, Levin M. 2013. A unified model for left-right asymmetry? Comparison and synthesis of molecular models of embryonic laterality. Dev Biol 379: 1–15.
    • (2013) Dev Biol , vol.379 , pp. 1-15
    • Vandenberg, L.N.1    Levin, M.2
  • 116
    • 79952674000 scopus 로고    scopus 로고
    • Interactome networks and human disease
    • Vidal M, Cusick ME, Barabasi AL. 2011. Interactome networks and human disease. Cell 144: 986–998.
    • (2011) Cell , vol.144 , pp. 986-998
    • Vidal, M.1    Cusick, M.E.2    Barabasi, A.L.3
  • 117
    • 84894651254 scopus 로고    scopus 로고
    • Coupling transcription factor occupancy to nucleosome architecture with DNase-FLASH
    • Vierstra J, Wang H, John S, Sandstrom R, Stamatoyannopoulos JA. 2014. Coupling transcription factor occupancy to nucleosome architecture with DNase-FLASH. Nat Methods 11: 66–72.
    • (2014) Nat Methods , vol.11 , pp. 66-72
    • Vierstra, J.1    Wang, H.2    John, S.3    Sandstrom, R.4    Stamatoyannopoulos, J.A.5
  • 118
    • 77955334500 scopus 로고    scopus 로고
    • How to make a heart: The origin and regulation of cardiac progenitor cells
    • Vincent SD, Buckingham ME. 2010. How to make a heart: The origin and regulation of cardiac progenitor cells. Curr Top Dev Biol 90: 1–41.
    • (2010) Curr Top Dev Biol , vol.90 , pp. 1-41
    • Vincent, S.D.1    Buckingham, M.E.2
  • 121
    • 84868573870 scopus 로고    scopus 로고
    • Fibroblast growth factor 10 gene regulation in the second heart field by Tbx1, Nkx2–5, and Islet1 reveals a genetic switch fordown-regulation in the myocardium
    • Watanabe Y, Zaffran S, Kuroiwa A, Higuchi H, Ogura T, Harvey RP, Kelly RG, Buckingham M. 2012. Fibroblast growth factor 10 gene regulation in the second heart field by Tbx1, Nkx2–5, and Islet1 reveals a genetic switch fordown-regulation in the myocardium. Proc Natl Acad Sci 109: 18273–18280.
    • (2012) Proc Natl Acad Sci , vol.109 , pp. 18273-18280
    • Watanabe, Y.1    Zaffran, S.2    Kuroiwa, A.3    Higuchi, H.4    Ogura, T.5    Harvey, R.P.6    Kelly, R.G.7    Buckingham, M.8
  • 122
    • 4344565788 scopus 로고    scopus 로고
    • GATA4 is essential for formation of the proepicardium and regulates cardiogenesis
    • Watt AJ, Battle MA, Li J, Duncan SA. 2004. GATA4 is essential for formation of the proepicardium and regulates cardiogenesis. Proc Natl Acad Sci 101: 12573–12578.
    • (2004) Proc Natl Acad Sci , vol.101 , pp. 12573-12578
    • Watt, A.J.1    Battle, M.A.2    Li, J.3    Duncan, S.A.4
  • 123
    • 84872020892 scopus 로고    scopus 로고
    • Predicting spatial and temporal gene expression using an integrative model of transcription factor occupancy and chromatin state
    • Wilczynski B, Liu YH, Yeo ZX, Furlong EE. 2012. Predicting spatial and temporal gene expression using an integrative model of transcription factor occupancy and chromatin state. PLoS Comput Biol 8: 1002798.
    • (2012) Plos Comput Biol , vol.8
    • Wilczynski, B.1    Liu, Y.H.2    Yeo, Z.X.3    Furlong, E.E.4
  • 124
    • 84884686777 scopus 로고    scopus 로고
    • MiR-1/133a clusters cooperatively specify the cardiomyogenic lineage by adjustment of myocardin levels during embryonic heart development
    • Wystub K, Besser J, Bachmann A, Boettger T, Braun T. 2013. miR-1/133a clusters cooperatively specify the cardiomyogenic lineage by adjustment of myocardin levels during embryonic heart development. PLoS Genet 9: 1003793.
    • (2013) Plos Genet , vol.9
    • Wystub, K.1    Besser, J.2    Bachmann, A.3    Boettger, T.4    Braun, T.5
  • 125
    • 0032145411 scopus 로고    scopus 로고
    • Smad proteins act in combination with synergistic and antagonistic regulators to target Dpp responses to the Drosophila mesoderm
    • Xu X, Yin Z, Hudson JB, Ferguson EL, Frasch M. 1998. Smad proteins act in combination with synergistic and antagonistic regulators to target Dpp responses to the Drosophila mesoderm. Genes Dev 12: 2354–2370.
    • (1998) Genes Dev , vol.12 , pp. 2354-2370
    • Xu, X.1    Yin, Z.2    Hudson, J.B.3    Ferguson, E.L.4    Frasch, M.5
  • 126
    • 0035891429 scopus 로고    scopus 로고
    • The combinatorial activities of Nkx2.5 and dHAND are essential for cardiac ventricle formation
    • Yamagishi H, Yamagishi C, Nakagawa O, Harvey RP, Olson EN, Srivastava D. 2001. The combinatorial activities of Nkx2.5 and dHAND are essential for cardiac ventricle formation. Dev Biol 239: 190–203.
    • (2001) Dev Biol , vol.239 , pp. 190-203
    • Yamagishi, H.1    Yamagishi, C.2    Nakagawa, O.3    Harvey, R.P.4    Olson, E.N.5    Srivastava, D.6
  • 127
    • 77953466536 scopus 로고    scopus 로고
    • Nuclear reprogramming to a pluripotent state by three approaches
    • Yamanaka S, Blau HM. 2010. Nuclear reprogramming to a pluripotent state by three approaches. Nature 465: 704–712.
    • (2010) Nature , vol.465 , pp. 704-712
    • Yamanaka, S.1    Blau, H.M.2
  • 128
    • 0031468348 scopus 로고    scopus 로고
    • Regulation of the twist target gene tinman by modular cis-regulatory elements during early mesoderm development
    • Yin Z, Xu XL, Frasch M. 1997. Regulation of the twist target gene tinman by modular cis-regulatory elements during early mesoderm development. Development 124: 4971–4982.
    • (1997) Development , vol.124 , pp. 4971-4982
    • Yin, Z.1    Xu, X.L.2    Frasch, M.3
  • 129
    • 80455144479 scopus 로고    scopus 로고
    • Pioneer transcription factors: Establishing competence for gene expression
    • Zaret KS, Carroll JS. 2011. Pioneer transcription factors: Establishing competence for gene expression. Genes Dev 25: 2227–2241.
    • (2011) Genes Dev , vol.25 , pp. 2227-2241
    • Zaret, K.S.1    Carroll, J.S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.