Transcriptional regulatory cascades in development: Initial rates, not steady state, determine network kinetics

Proceedings of the National Academy of Sciences of the United States of America

Volumn 100, Issue 16, 2003, Pages 9371-9376

  Bolouri, Hamid ^a   Davidson, Eric H ^b  

^a INSTITUTE FOR SYSTEMS BIOLOGY   (United States)

^b CALIFORNIA INSTITUTE OF TECHNOLOGY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

TRANSCRIPTION FACTOR;

ARTICLE; CIS REGULATORY ELEMENT; CONCENTRATION RESPONSE; EMBRYO; KINETICS; MODEL; NONHUMAN; PARAMETER; PRIORITY JOURNAL; REGULATORY SEQUENCE; SEA URCHIN; SIMULATION; TIME; TRANSCRIPTION INITIATION; TRANSCRIPTION REGULATION;

NON-PROGRAMMATIC;

ANIMALS; GENE EXPRESSION REGULATION, DEVELOPMENTAL; KINETICS; MODELS, THEORETICAL; PROTEIN BIOSYNTHESIS; RNA; SEA URCHINS; TIME FACTORS; TRANSCRIPTION, GENETIC;

ECHINOIDEA; INVERTEBRATA;

EID: 0042424655     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.1533293100     Document Type: Article

References (36)

1. Davidson, E. H. (2001) Genomic Regulatory Systems: Development and Evolution (Academic, San Diego).
2. Davidson, E. H., Rast, J. P., Oliveri, P., Ransick, A., Calestani, C., Yuh, C.-H., Minokawa, T., Amore, G., Hinman, V., Arenas-Mena, C., et al. (2002) Science 295, 1669-1678.
3. Davidson, E. H., McClay, D. R. & Hood, L. (2003) Proc. Natl. Acad. Sci. USA 100, 1475-1480.
4. Ackers, G. K., Johnson, A. D. & Shea, M. A. (1982) Proc. Natl. Acad. Sci. USA 79, 1129-1133.
5. Emerson, B. M., Lewis, C. D. & Felsenfeld, G. (1985) Cell 41, 21-30.
6. Lin, S. Y. & Riggs, A. D. (1975) Cell 4, 107-111.
7. Calzone, F. J., Thézé, N., Thiebaud, P., Hill, R. L., Britten, R. J. & Davidson, E. H. (1988) Genes Dev. 2, 1074-1088.
8. Garrity, P. A., Chen, D., Rothenberg, E. V. & Wold, B. J. (1994) Mol. Cell. Biol. 14, 2159-2169.
9. Driever, W. & Nüsslein-Volhard, C. (1989) Nature 337, 138-143.
10. Thanos, D. & Maniatis, T. (1995) Cell 83, 1091-1100.
11. Sugawara M., Scholl, T., Mahanta, S. K., Ponath, P. D. & Strominger, J. L. (1995) J. Exp. Med. 182, 175-184.
12. Sigvardsson, M., Clark, D. R., Fitzsimmons, D., Doyle, M., Åkerblad, P., Breslin, T., Bilke, S., Li, R., Yeamans, C., Zhang, G. & Hagman, J. (2002) Mol. Cell. Biol. 22, 8539-8551.
13. Mao, Z. X. & Nadal-Ginard, B. (1996) J. Biol. Chem. 271, 14371-14375.
14. Gregory, R. C., Taxman, D. J., Seshasayee, D., Kensinger, M. H., Bieker, J. J. & Wojchowski, D. M. (1996) Blood 87, 1793-1801.
15. Braun, H. & Suske, G. (1998) J. Biol. Chem. 273, 9821-9828.
16. Hernandez-Munain, C., Roberts, J. L. & Krangel, M. S. (1998) Mol. Cell. Biol. 18, 3223-3233.
17. Yuh, C.-H., Bolouri, H. & Davidson, E. H. (1998) Science 279, 1896-1902.
18. Yuh, C.-H., Bolouri, H. & Davidson, E. H. (2001) Development (Cambridge, U.K.) 128, 617-628.
19. Davidson, E. H. (1986) Gene Activity in Early Development (Academic, Orlando, FL), 3rd Ed.
20. Miller, O. L. & Bakken, A. H. (1972) Acta Endocrinol. 168, Suppl., 155-177.
21. Busby, S. & Bakken, A. H. (1979) Chromosoma 79, 85-104.
22. Aronson, A. I. & Chen, K. (1977) Dev. Biol. 59, 39-48.
23. Malik, S. & Roeder, R. G. (2000) Trends Biochem. Sci. 25, 277-283.
24. Ito, M. & Roeder, R. G. (2001) Trends Endocrinol. Metab. 12, 127-134.
25. Cabrera, C. V., Lee, J. J., Ellison, J. W., Britten, R. J. & Davidson, E. H. (1984) J. Mol. Biol. 174, 85-111.
26. Lee, J. J., Calzone, F. J. & Davidson, E. H. (1992) Dev. Biol. 149, 415-431.
27. Davidson, E. H., Rast, J. P., Oliveri, P., Ransick, A., Calestani, C., Yuh, C.-H., Minokawa, T., Amore, G., Hinman, V., Arenas-Mena, C., et al. (2002) Dev. Biol. 246, 162-190.
28. Nasiadka, A., Dietrich, B. H. & Krause, H. M. (2002) in Advances in Developmental Biology and Biochemistry, ed. DePamphilis, M. (Elsevier, Amsterdam), pp. 155-204.
29. Zeller, R. W., Britten, R. J. & Davidson, E. H. (1995) Dev. Biol. 170, 75-82.
30. Höög, C., Calzone, F. J., Cutting, A. E., Britten, R. J. & Davidson, E. H. (1991) Development (Cambridge, U.K.) 112, 351-364.
31. Calzone, F. J., Höög, C., Teplow, D. B., Cutting, A. E., Zeller, R. W., Britten, R. J. & Davidson, E. H. (1991) Development (Cambridge, U.K.) 112, 335-350.
32. Cutting, A. E., Höög, C., Calzone, F. J., Britten, R. J. & Davidson, E. H. (1990) Proc. Natl. Acad. Sci. USA 87, 7953-7957.
33. Coffman, J. A., Kirchhamer, C. V., Harrington, M. G. & Davidson, E. H. (1996) Dev. Biol. 174, 43-54.
34. Martinez, P. & Davidson, E. H. (1997) Dev. Biol. 181, 213-222.
35. Wang, D. G.-W., Kirchhamer, C. V., Britten, R. J. & Davidson, E. H. (1995) Development (Cambridge, U.K.) 121, 1111-1122.
36. Arenas-Mena, C., Cameron, R. A. & Davidson, E. H. (2000) Development (Cambridge, U.K.) 127, 4631-4643.