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Volumn 240, Issue 2, 2015, Pages 242-251

Featured Article: Transcriptome profiling of expression changes during neuronal death by RNA-Seq

Author keywords

apoptosis; Cerebellar granule neurons; potassium withdrawal; RNA sequencing

Indexed keywords

BETA ADRENERGIC RECEPTOR; CYCLIC AMP DEPENDENT PROTEIN KINASE; CYCLIN DEPENDENT KINASE INHIBITOR 1; EPHRIN RECEPTOR B1; HEAT SHOCK PROTEIN 90; HEPATOCYTE NUCLEAR FACTOR 1; MICRORNA 221; MITOGEN ACTIVATED PROTEIN KINASE P38; MYC PROTEIN; POTASSIUM; TRANSCRIPTION FACTOR NRF1; TRANSCRIPTION FACTOR SP3; TRANSCRIPTOME; UPSTREAM STIMULATORY FACTOR 1; BIOLOGICAL MARKER;

EID: 84922715232     PISSN: 15353702     EISSN: 15353699     Source Type: Journal    
DOI: 10.1177/1535370214551688     Document Type: Article
Times cited : (8)

References (53)
  • 2
    • 0034329742 scopus 로고    scopus 로고
    • Apoptosis in neurodegenerative disorders
    • Mattson MP.Apoptosis in neurodegenerative disorders.Nat Rev Mol Cell Biol. 2000;1:120-29
    • (2000) Nat Rev Mol Cell Biol , vol.1 , pp. 120-129
    • Mattson, M.P.1
  • 3
    • 20944431614 scopus 로고    scopus 로고
    • Inhibition of neuronal apoptosis by the cyclin-dependent kinase inhibitor GW8510: identification of 3' substituted indolones as a scaffold for the development of neuroprotective drugs
    • Johnson K,Liu L,Majdzadeh N,Chavez C,Chin PC,Morrison B,Wang L,Park J,Chugh P,Chen HM,D'Mello SR.Inhibition of neuronal apoptosis by the cyclin-dependent kinase inhibitor GW8510: identification of 3' substituted indolones as a scaffold for the development of neuroprotective drugs.J Neurochem. 2005;93:538-48
    • (2005) J Neurochem , vol.93 , pp. 538-548
    • Johnson, K.1    Liu, L.2    Majdzadeh, N.3    Chavez, C.4    Chin, P.C.5    Morrison, B.6    Wang, L.7    Park, J.8    Chugh, P.9    Chen, H.M.10    D'Mello, S.R.11
  • 4
    • 0025228824 scopus 로고
    • Modulation of non-N-methyl-D-aspartate receptors in cultured cerebellar granule cells
    • Gallo V,Giovannini C,Levi G.Modulation of non-N-methyl-D-aspartate receptors in cultured cerebellar granule cells.J Neurochem. 1990;54:1619-25
    • (1990) J Neurochem , vol.54 , pp. 1619-1625
    • Gallo, V.1    Giovannini, C.2    Levi, G.3
  • 5
    • 0027483920 scopus 로고
    • Induction of apoptosis in cerebellar granule neurons by low potassium: inhibition of death by insulin-like growth factor I and cAMP
    • D'Mello SR,Galli C,Ciotti T,Calissano P.Induction of apoptosis in cerebellar granule neurons by low potassium: inhibition of death by insulin-like growth factor I and cAMP.Proc Natl Acad Sci U S A. 1993;90:10989-93
    • (1993) Proc Natl Acad Sci U S A , vol.90 , pp. 10989-10993
    • D'Mello, S.R.1    Galli, C.2    Ciotti, T.3    Calissano, P.4
  • 6
    • 0029909560 scopus 로고    scopus 로고
    • Metabolic and genetic analyses of apoptosis in potassium/serum-deprived rat cerebellar granule cells
    • Miller TM,Johnson EM.Metabolic and genetic analyses of apoptosis in potassium/serum-deprived rat cerebellar granule cells.J Neurosci. 1996;16:7487-95
    • (1996) J Neurosci , vol.16 , pp. 7487-7495
    • Miller, T.M.1    Johnson, E.M.2
  • 7
    • 84893050139 scopus 로고    scopus 로고
    • HSF1 protects neurons through a novel trimerization- and HSP-independent mechanism
    • Verma P,Pfister JA,Mallick S,D'Mello SR.HSF1 protects neurons through a novel trimerization- and HSP-independent mechanism.J Neurosci. 2014;34:1599-612
    • (2014) J Neurosci , vol.34 , pp. 1599-1612
    • Verma, P.1    Pfister, J.A.2    Mallick, S.3    D'Mello, S.R.4
  • 9
    • 0023851503 scopus 로고
    • Inhibitors of protein synthesis and RNA synthesis prevent neuronal death caused by nerve growth factor deprivation
    • Martin DP,Schmidt RE,DiStefano PS,Lowry OH,Carter JG,Johnson EM.Inhibitors of protein synthesis and RNA synthesis prevent neuronal death caused by nerve growth factor deprivation.J Cell Biol. 1988;106:829-44
    • (1988) J Cell Biol , vol.106 , pp. 829-844
    • Martin, D.P.1    Schmidt, R.E.2    DiStefano, P.S.3    Lowry, O.H.4    Carter, J.G.5    Johnson, E.M.6
  • 10
    • 0029954311 scopus 로고    scopus 로고
    • Potassium deprivation-induced apoptosis of cerebellar granule neurons: a sequential requirement for new mRNA and protein synthesis, ICE-like protease activity, and reactive oxygen species
    • Schulz JB,Weller M,Klockgether T.Potassium deprivation-induced apoptosis of cerebellar granule neurons: a sequential requirement for new mRNA and protein synthesis, ICE-like protease activity, and reactive oxygen species.J Neurosci. 1996;16:4696-706
    • (1996) J Neurosci , vol.16 , pp. 4696-4706
    • Schulz, J.B.1    Weller, M.2    Klockgether, T.3
  • 11
    • 0031608680 scopus 로고    scopus 로고
    • Molecular regulation of neuronal apoptosis
    • D'Mello SR.Molecular regulation of neuronal apoptosis.Curr Top Dev Biol. 1998;39:187-213
    • (1998) Curr Top Dev Biol , vol.39 , pp. 187-213
    • D'Mello, S.R.1
  • 13
    • 14044270949 scopus 로고    scopus 로고
    • Genes regulated in neurons undergoing transcription-dependent apoptosis belong to signaling pathways rather than the apoptotic machinery
    • Desagher S,Severac D,Lipkin A,Bernis C,Ritchie W,Le Digarcher A,Journot L.Genes regulated in neurons undergoing transcription-dependent apoptosis belong to signaling pathways rather than the apoptotic machinery.J Biol Chem. 2005;280:5693-702
    • (2005) J Biol Chem , vol.280 , pp. 5693-5702
    • Desagher, S.1    Severac, D.2    Lipkin, A.3    Bernis, C.4    Ritchie, W.5    Le Digarcher, A.6    Journot, L.7
  • 14
    • 84898618335 scopus 로고    scopus 로고
    • Comparison of RNA-Seq and microarray in transcriptome profiling of activated T cells
    • Zhao S,Fung-Leung WP,Bittner A,Ngo K,Liu X.Comparison of RNA-Seq and microarray in transcriptome profiling of activated T cells.PLoS One. 2014;9:e78644-e78644
    • (2014) PLoS One , vol.9 , pp. e78644-e78644
    • Zhao, S.1    Fung-Leung, W.P.2    Bittner, A.3    Ngo, K.4    Liu, X.5
  • 16
    • 57749195712 scopus 로고    scopus 로고
    • RNA-Seq: a revolutionary tool for transcriptomics
    • Wang Z,Gerstein M,Snyder M.RNA-Seq: a revolutionary tool for transcriptomics.Nat Rev Genet. 2009;10:57-63
    • (2009) Nat Rev Genet , vol.10 , pp. 57-63
    • Wang, Z.1    Gerstein, M.2    Snyder, M.3
  • 18
    • 84856468953 scopus 로고    scopus 로고
    • NGS QC Toolkit: a toolkit for quality control of next generation sequencing data
    • Patel RK,Jain M.NGS QC Toolkit: a toolkit for quality control of next generation sequencing data.PLoS One. 2012;7:e30619-e30619
    • (2012) PLoS One , vol.7 , pp. e30619-e30619
    • Patel, R.K.1    Jain, M.2
  • 19
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li H,Durbin R.Fast and accurate short read alignment with Burrows-Wheeler transform.Bioinformatics. 2009;25:1754-60
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 20
    • 77958471357 scopus 로고    scopus 로고
    • Differential expression analysis for sequence count data
    • Anders S,Huber W.Differential expression analysis for sequence count data.Genome Biol. 2010;11:R106-2010-11-10-r106
    • (2010) Genome Biol , vol.11
    • Anders, S.1    Huber, W.2
  • 23
    • 0031873788 scopus 로고    scopus 로고
    • Decreased expression of the metabotropic glutamate receptor-4 gene is associated with neuronal apoptosis
    • Borodezt K,D'Mello SR.Decreased expression of the metabotropic glutamate receptor-4 gene is associated with neuronal apoptosis.J Neurosci Res. 1998;53:531-41
    • (1998) J Neurosci Res , vol.53 , pp. 531-541
    • Borodezt, K.1    D'Mello, S.R.2
  • 24
    • 0028924891 scopus 로고
    • Apoptosis in cerebellar granule cells is blocked by high KCl, forskolin, and IGF-1 through distinct mechanisms of action: the involvement of intracellular calcium and RNA synthesis
    • Galli C,Meucci O,Scorziello A,Werge TM,Calissano P,Schettini G.Apoptosis in cerebellar granule cells is blocked by high KCl, forskolin, and IGF-1 through distinct mechanisms of action: the involvement of intracellular calcium and RNA synthesis.J Neurosci. 1995;15:1172-9
    • (1995) J Neurosci , vol.15 , pp. 1172-1179
    • Galli, C.1    Meucci, O.2    Scorziello, A.3    Werge, T.M.4    Calissano, P.5    Schettini, G.6
  • 25
    • 0031021770 scopus 로고    scopus 로고
    • Biochemical and temporal analysis of events associated with apoptosis induced by lowering the extracellular potassium concentration in mouse cerebellar granule neurons
    • Nardi N,Avidan G,Daily D,Zilkha-Falb R,Barzilai A.Biochemical and temporal analysis of events associated with apoptosis induced by lowering the extracellular potassium concentration in mouse cerebellar granule neurons.J Neurochem. 1997;68:750-59
    • (1997) J Neurochem , vol.68 , pp. 750-759
    • Nardi, N.1    Avidan, G.2    Daily, D.3    Zilkha-Falb, R.4    Barzilai, A.5
  • 26
    • 0031766412 scopus 로고    scopus 로고
    • Insulin-like growth factor-binding proteins: functional diversity or redundancy?
    • Murphy LJ.Insulin-like growth factor-binding proteins: functional diversity or redundancy?.J Mol Endocrinol. 1998;21:97-107
    • (1998) J Mol Endocrinol , vol.21 , pp. 97-107
    • Murphy, L.J.1
  • 27
    • 0035851204 scopus 로고    scopus 로고
    • BH3-only Bcl-2 family members are coordinately regulated by the JNK pathway and require Bax to induce apoptosis in neurons
    • Harris CA,Johnson EM.BH3-only Bcl-2 family members are coordinately regulated by the JNK pathway and require Bax to induce apoptosis in neurons.J Biol Chem. 2001;276:37754-60
    • (2001) J Biol Chem , vol.276 , pp. 37754-37760
    • Harris, C.A.1    Johnson, E.M.2
  • 28
    • 0035917822 scopus 로고    scopus 로고
    • Upregulation of death pathway molecules in rat cerebellar granule neurons undergoing apoptosis
    • Ginham R,Harrison DC,Facci L,Skaper S,Philpott KL.Upregulation of death pathway molecules in rat cerebellar granule neurons undergoing apoptosis.Neurosci Lett. 2001;302:113-6
    • (2001) Neurosci Lett , vol.302 , pp. 113-116
    • Ginham, R.1    Harrison, D.C.2    Facci, L.3    Skaper, S.4    Philpott, K.L.5
  • 29
    • 0032937879 scopus 로고    scopus 로고
    • Withdrawal of survival factors results in activation of the JNK pathway in neuronal cells leading to Fas ligand induction and cell death
    • Le-Niculescu H,Bonfoco E,Kasuya Y,Claret FX,Green DR,Karin M.Withdrawal of survival factors results in activation of the JNK pathway in neuronal cells leading to Fas ligand induction and cell death.Mol Cell Biol. 1999;19:751-63
    • (1999) Mol Cell Biol , vol.19 , pp. 751-763
    • Le-Niculescu, H.1    Bonfoco, E.2    Kasuya, Y.3    Claret, F.X.4    Green, D.R.5    Karin, M.6
  • 30
    • 0033977687 scopus 로고    scopus 로고
    • Caspase-3 is required for apoptosis-associated DNA fragmentation but not for cell death in neurons deprived of potassium
    • D'Mello SR,Kuan CY,Flavell RA,Rakic P.Caspase-3 is required for apoptosis-associated DNA fragmentation but not for cell death in neurons deprived of potassium.J Neurosci Res. 2000;59:24-31
    • (2000) J Neurosci Res , vol.59 , pp. 24-31
    • D'Mello, S.R.1    Kuan, C.Y.2    Flavell, R.A.3    Rakic, P.4
  • 31
    • 0032938951 scopus 로고    scopus 로고
    • An enhanced expression of the immediate early gene, Egr-1, is associated with neuronal apoptosis in culture
    • Catania MV,Copani A,Calogero A,Ragonese GI,Condorelli DF,Nicoletti F.An enhanced expression of the immediate early gene, Egr-1, is associated with neuronal apoptosis in culture.Neuroscience. 1999;91:1529-38
    • (1999) Neuroscience , vol.91 , pp. 1529-1538
    • Catania, M.V.1    Copani, A.2    Calogero, A.3    Ragonese, G.I.4    Condorelli, D.F.5    Nicoletti, F.6
  • 32
    • 0035172742 scopus 로고    scopus 로고
    • Insulin-like growth factor binding protein 5 and type-1 insulin-like growth factor receptor are differentially regulated during apoptosis in cerebellar granule cells
    • Roschier M,Kuusisto E,Suuronen T,Korhonen P,Kyrylenko S,Salminen A.Insulin-like growth factor binding protein 5 and type-1 insulin-like growth factor receptor are differentially regulated during apoptosis in cerebellar granule cells.J Neurochem. 2001;76:11-20
    • (2001) J Neurochem , vol.76 , pp. 11-20
    • Roschier, M.1    Kuusisto, E.2    Suuronen, T.3    Korhonen, P.4    Kyrylenko, S.5    Salminen, A.6
  • 33
    • 84887329131 scopus 로고    scopus 로고
    • The activity-dependent transcription factor NPAS4 regulates domain-specific inhibition
    • Bloodgood BL,Sharma N,Browne HA,Trepman AZ,Greenberg ME.The activity-dependent transcription factor NPAS4 regulates domain-specific inhibition.Nature. 2013;503:121-5
    • (2013) Nature , vol.503 , pp. 121-125
    • Bloodgood, B.L.1    Sharma, N.2    Browne, H.A.3    Trepman, A.Z.4    Greenberg, M.E.5
  • 34
    • 80455158292 scopus 로고    scopus 로고
    • Global analysis of gene expression in NGF-deprived sympathetic neurons identifies molecular pathways associated with cell death
    • Kristiansen M,Menghi F,Hughes R,Hubank M,Ham J.Global analysis of gene expression in NGF-deprived sympathetic neurons identifies molecular pathways associated with cell death.BMC Genomics. 2011;12:551-2164-12-551
    • (2011) BMC Genomics , vol.12
    • Kristiansen, M.1    Menghi, F.2    Hughes, R.3    Hubank, M.4    Ham, J.5
  • 35
    • 84896401100 scopus 로고    scopus 로고
    • Neurodegeneration in Parkinson's disease: interactions of oxidative stress, tryptophan catabolites and depression with mitochondria and sirtuins
    • Anderson G,Maes M.Neurodegeneration in Parkinson's disease: interactions of oxidative stress, tryptophan catabolites and depression with mitochondria and sirtuins.Mol Neurobiol. 2014;49:771-83
    • (2014) Mol Neurobiol , vol.49 , pp. 771-783
    • Anderson, G.1    Maes, M.2
  • 36
    • 84899679810 scopus 로고    scopus 로고
    • Neuronal failure in Alzheimer's disease: a view through the oxidative stress looking-glass
    • Bonda DJ,Wang X,Lee HG,Smith MA,Perry G,Zhu X.Neuronal failure in Alzheimer's disease: a view through the oxidative stress looking-glass.Neurosci Bull. 2014;30:243-52
    • (2014) Neurosci Bull , vol.30 , pp. 243-252
    • Bonda, D.J.1    Wang, X.2    Lee, H.G.3    Smith, M.A.4    Perry, G.5    Zhu, X.6
  • 37
    • 84902535538 scopus 로고    scopus 로고
    • The centrality of mitochondria in the pathogenesis and treatment of Parkinson's disease. CNS Neurosci Ther
    • Camilleri A, Vassallo N. The centrality of mitochondria in the pathogenesis and treatment of Parkinson's disease. CNS Neurosci Ther. Epub ahead of print 7 April 2014.
    • (2014) Epub ahead of print , pp. 7
    • Camilleri, A.1    Vassallo, N.2
  • 38
    • 42749087763 scopus 로고    scopus 로고
    • The mitochondrial impairment, oxidative stress and neurodegeneration connection: reality or just an attractive hypothesis?
    • Fukui H,Moraes CT.The mitochondrial impairment, oxidative stress and neurodegeneration connection: reality or just an attractive hypothesis?.Trends Neurosci. 2008;31:251-6
    • (2008) Trends Neurosci , vol.31 , pp. 251-256
    • Fukui, H.1    Moraes, C.T.2
  • 39
    • 84884879594 scopus 로고    scopus 로고
    • Mitochondrial defects and oxidative stress in Alzheimer disease and Parkinson disease
    • Yan MH,Wang X,Zhu X.Mitochondrial defects and oxidative stress in Alzheimer disease and Parkinson disease.Free Radic Biol Med. 2013;62:90-101
    • (2013) Free Radic Biol Med , vol.62 , pp. 90-101
    • Yan, M.H.1    Wang, X.2    Zhu, X.3
  • 40
    • 84894468110 scopus 로고    scopus 로고
    • Mitochondrial dysfunction contributes to neurodegeneration in multiple sclerosis
    • Witte ME,Mahad DJ,Lassmann H,van Horssen J.Mitochondrial dysfunction contributes to neurodegeneration in multiple sclerosis.Trends Mol Med. 2014;20:179-87
    • (2014) Trends Mol Med , vol.20 , pp. 179-187
    • Witte, M.E.1    Mahad, D.J.2    Lassmann, H.3    van Horssen, J.4
  • 41
    • 78650034178 scopus 로고    scopus 로고
    • Ubiquitin/proteasome pathway impairment in neurodegeneration: therapeutic implications
    • Huang Q,Figueiredo-Pereira ME.Ubiquitin/proteasome pathway impairment in neurodegeneration: therapeutic implications.Apoptosis. 2010;15:1292-311
    • (2010) Apoptosis , vol.15 , pp. 1292-1311
    • Huang, Q.1    Figueiredo-Pereira, M.E.2
  • 42
    • 1942534018 scopus 로고    scopus 로고
    • Regulation of apoptosis proteins in cancer cells by ubiquitin
    • Zhang HG,Wang J,Yang X,Hsu HC,Mountz JD.Regulation of apoptosis proteins in cancer cells by ubiquitin.Oncogene. 2004;23:2009-15
    • (2004) Oncogene , vol.23 , pp. 2009-2015
    • Zhang, H.G.1    Wang, J.2    Yang, X.3    Hsu, H.C.4    Mountz, J.D.5
  • 43
    • 0034647563 scopus 로고    scopus 로고
    • Ubiquitin-mediated degradation of the proapoptotic active form of bid. A functional consequence on apoptosis induction
    • Breitschopf K,Zeiher AM,Dimmeler S.Ubiquitin-mediated degradation of the proapoptotic active form of bid. A functional consequence on apoptosis induction.J Biol Chem. 2000;275:21648-52
    • (2000) J Biol Chem , vol.275 , pp. 21648-21652
    • Breitschopf, K.1    Zeiher, A.M.2    Dimmeler, S.3
  • 44
    • 0035902601 scopus 로고    scopus 로고
    • Ubiquitin-protein ligase activity of X-linked inhibitor of apoptosis protein promotes proteasomal degradation of caspase-3 and enhances its anti-apoptotic effect in Fas-induced cell death
    • Suzuki Y,Nakabayashi Y,Takahashi R.Ubiquitin-protein ligase activity of X-linked inhibitor of apoptosis protein promotes proteasomal degradation of caspase-3 and enhances its anti-apoptotic effect in Fas-induced cell death.Proc Natl Acad Sci U S A. 2001;98:8662-7
    • (2001) Proc Natl Acad Sci U S A , vol.98 , pp. 8662-8667
    • Suzuki, Y.1    Nakabayashi, Y.2    Takahashi, R.3
  • 45
    • 0034607655 scopus 로고    scopus 로고
    • Ubiquitin protein ligase activity of IAPs and their degradation in proteasomes in response to apoptotic stimuli
    • Yang Y,Fang S,Jensen JP,Weissman AM,Ashwell JD.Ubiquitin protein ligase activity of IAPs and their degradation in proteasomes in response to apoptotic stimuli.Science. 2000;288:874-7
    • (2000) Science , vol.288 , pp. 874-877
    • Yang, Y.1    Fang, S.2    Jensen, J.P.3    Weissman, A.M.4    Ashwell, J.D.5
  • 47
    • 34247508686 scopus 로고    scopus 로고
    • Cell cycle regulation in the postmitotic neuron: oxymoron or new biology?
    • Herrup K,Yang Y.Cell cycle regulation in the postmitotic neuron: oxymoron or new biology?.Nat Rev Neurosci. 2007;8:368-78
    • (2007) Nat Rev Neurosci , vol.8 , pp. 368-378
    • Herrup, K.1    Yang, Y.2
  • 48
    • 0030031514 scopus 로고    scopus 로고
    • Cyclin D1 is an essential mediator of apoptotic neuronal cell death
    • Kranenburg O,van der Eb AJ,Zantema A.Cyclin D1 is an essential mediator of apoptotic neuronal cell death.EMBO J. 1996;15:46-54
    • (1996) EMBO J , vol.15 , pp. 46-54
    • Kranenburg, O.1    van der Eb, A.J.2    Zantema, A.3
  • 49
    • 79960664047 scopus 로고    scopus 로고
    • Cell cycle reactivation in mature neurons: a link with brain plasticity, neuronal injury and neurodegenerative diseases?
    • Hernandez-Ortega K,Quiroz-Baez R,Arias C.Cell cycle reactivation in mature neurons: a link with brain plasticity, neuronal injury and neurodegenerative diseases?.Neurosci Bull. 2011;27:185-96
    • (2011) Neurosci Bull , vol.27 , pp. 185-196
    • Hernandez-Ortega, K.1    Quiroz-Baez, R.2    Arias, C.3
  • 51
    • 33947289969 scopus 로고    scopus 로고
    • Cell division in the CNS: protective response or lethal event in post-mitotic neurons?
    • Yang Y,Herrup K.Cell division in the CNS: protective response or lethal event in post-mitotic neurons?.Biochim Biophys Acta. 2007;1772:457-66
    • (2007) Biochim Biophys Acta , vol.1772 , pp. 457-466
    • Yang, Y.1    Herrup, K.2
  • 52
    • 84871609151 scopus 로고    scopus 로고
    • MicroRNAs and neurodegeneration: role and impact
    • Abe M,Bonini NM.MicroRNAs and neurodegeneration: role and impact.Trends Cell Biol. 2013;23:30-36
    • (2013) Trends Cell Biol , vol.23 , pp. 30-36
    • Abe, M.1    Bonini, N.M.2


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