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Volumn 35, Issue SUPPL.2, 2007, Pages

DAVID Bioinformatics Resources: Expanded annotation database and novel algorithms to better extract biology from large gene lists

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ARTICLE; AUTOMATED PATTERN RECOGNITION; BIOLOGY; COMPUTER PROGRAM; DNA MICROARRAY; GENE EXPRESSION PROFILING; GENETIC DATABASE; GENOMICS; HUMAN; INFORMATION RETRIEVAL; INTERNET; METHODOLOGY; NUCLEIC ACID DATABASE; STATISTICAL ANALYSIS; STATISTICS;

EID: 34547589578     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkm415     Document Type: Article
Times cited : (1777)

References (28)
  • 3
    • 24044440971 scopus 로고    scopus 로고
    • BiNGO: A Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks
    • Maere, S., Heymans, K. and Kuiper, M. (2005) BiNGO: a Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks. Bioinformatics, 21, 3448-3449.
    • (2005) Bioinformatics , vol.21 , pp. 3448-3449
    • Maere, S.1    Heymans, K.2    Kuiper, M.3
  • 6
    • 2442685416 scopus 로고    scopus 로고
    • CLENCH: A program for calculating Cluster ENriCHment using the Gene Ontology
    • Shah, N.H. and Fedoroff, N.V. (2004) CLENCH: a program for calculating Cluster ENriCHment using the Gene Ontology. Bioinformatics, 20, 1196-1197.
    • (2004) Bioinformatics , vol.20 , pp. 1196-1197
    • Shah, N.H.1    Fedoroff, N.V.2
  • 7
    • 23144458671 scopus 로고    scopus 로고
    • GFINDer: Genetic disease and phenotype location statistical analysis and mining of dynamically annotated gene lists
    • Masseroli, M., Galati, O. and Pinciroli, F. (2005) GFINDer: genetic disease and phenotype location statistical analysis and mining of dynamically annotated gene lists. Nucleic Acids Res., 33, W717-W723.
    • (2005) Nucleic Acids Res. , vol.33
    • Masseroli, M.1    Galati, O.2    Pinciroli, F.3
  • 8
    • 25444507101 scopus 로고    scopus 로고
    • DynGO: A tool for visualizing and mining of Gene Ontology and its associations
    • Liu, H., Hu, Z.Z. and Wu, C.H. (2005) DynGO: a tool for visualizing and mining of Gene Ontology and its associations. BMC Bioinformatics, 6, 201.
    • (2005) BMC Bioinformatics , vol.6 , pp. 201
    • Liu, H.1    Hu, Z.Z.2    Wu, C.H.3
  • 9
    • 1542399989 scopus 로고    scopus 로고
    • FatiGO: A web tool for finding significant associations of Gene Ontology terms with groups of genes
    • Al-Shahrour, F., Diaz-Uriarte, R. and Dopazo, J. (2004) FatiGO: a web tool for finding significant associations of Gene Ontology terms with groups of genes. Bioinformatics, 20, 578-580.
    • (2004) Bioinformatics , vol.20 , pp. 578-580
    • Al-Shahrour, F.1    Diaz-Uriarte, R.2    Dopazo, J.3
  • 11
    • 25444469954 scopus 로고    scopus 로고
    • GObar: A gene ontology based analysis and visualization tool for gene sets
    • Lee, J.S., Katari, G. and Sachidanandam, R. (2005) GObar: a gene ontology based analysis and visualization tool for gene sets. BMC Bioinformatics, 6, 189.
    • (2005) BMC Bioinformatics , vol.6 , pp. 189
    • Lee, J.S.1    Katari, G.2    Sachidanandam, R.3
  • 12
    • 0038522873 scopus 로고    scopus 로고
    • GeneMerge\post-genomic analysis, data mining, and hypothesis testing
    • Castillo-Davis, C.I. and Hartl, D.L. (2003) GeneMerge\post-genomic analysis, data mining, and hypothesis testing. Bioinformatics, 19, 891-892.
    • (2003) Bioinformatics , vol.19 , pp. 891-892
    • Castillo-Davis, C.I.1    Hartl, D.L.2
  • 13
    • 3142665525 scopus 로고    scopus 로고
    • GOstat: Find statistically overrepresented Gene Ontologies within a group of genes
    • Beissbarth, T. and Speed, T.P. (2004) GOstat: find statistically overrepresented Gene Ontologies within a group of genes. Bioinformatics, 20, 1464-1465.
    • (2004) Bioinformatics , vol.20 , pp. 1464-1465
    • Beissbarth, T.1    Speed, T.P.2
  • 14
    • 21844473579 scopus 로고    scopus 로고
    • GoSurfer: A graphical interactive tool for comparative analysis of large gene sets in Gene Ontologytrade mark Space
    • Zhong, S., Storch, K.F., Lipan, O., Kao, M.C., Weitz, C.J. and Wong, W.H. (2004) GoSurfer: A graphical interactive tool for comparative analysis of large gene sets in Gene Ontologytrade mark Space. Appl. Bioinformatics, 3, 261-264.
    • (2004) Appl. Bioinformatics , vol.3 , pp. 261-264
    • Zhong, S.1    Storch, K.F.2    Lipan, O.3    Kao, M.C.4    Weitz, C.J.5    Wong, W.H.6
  • 15
    • 20444365683 scopus 로고    scopus 로고
    • GOToolBox: Functional analysis of gene datasets based on Gene Ontology
    • Martin, D., Brun, C., Remy, E., Mouren, P., Thieffry, D. and Jacq, B. (2004) GOToolBox: functional analysis of gene datasets based on Gene Ontology. Genome Biol., 5, R101.
    • (2004) Genome Biol. , vol.5
    • Martin, D.1    Brun, C.2    Remy, E.3    Mouren, P.4    Thieffry, D.5    Jacq, B.6
  • 16
    • 2942550697 scopus 로고    scopus 로고
    • GOTree Machine (GOTM): A web-based platform for interpreting sets of interesting genes using Gene Ontology hierarchies
    • Zhang, B., Schmoyer, D., Kirov, S. and Snoddy, J. (2004) GOTree Machine (GOTM): a web-based platform for interpreting sets of interesting genes using Gene Ontology hierarchies. BMC Bioinformatics, 5, 16.
    • (2004) BMC Bioinformatics , vol.5 , pp. 16
    • Zhang, B.1    Schmoyer, D.2    Kirov, S.3    Snoddy, J.4
  • 17
    • 23044478689 scopus 로고    scopus 로고
    • High-Throughput GoMiner, an 'industrial-strength' integrative gene ontology tool for interpretation of multiple-microarray experiments, with application to studies of Common Variable Immune Deficiency (CVID)
    • Zeeberg, B.R., Qin, H., Narasimhan, S., Sunshine, M., Cao, H., Kane, D.W., Reimers, M., Stephens, R.M., Bryant, D. et al. (2005) High-Throughput GoMiner, an 'industrial-strength' integrative gene ontology tool for interpretation of multiple-microarray experiments, with application to studies of Common Variable Immune Deficiency (CVID). BMC Bioinformatics, 6, 168.
    • (2005) BMC Bioinformatics , vol.6 , pp. 168
    • Zeeberg, B.R.1    Qin, H.2    Narasimhan, S.3    Sunshine, M.4    Cao, H.5    Kane, D.W.6    Reimers, M.7    Stephens, R.M.8    Bryant, D.9
  • 18
    • 16344373908 scopus 로고    scopus 로고
    • Identifying subtle interrelated changes in functional gene categories using continuous measures of gene expression
    • Ben-Shaul, Y., Bergman, H. and Soreq, H. (2005) Identifying subtle interrelated changes in functional gene categories using continuous measures of gene expression. Bioinformatics, 21, 1129-1137.
    • (2005) Bioinformatics , vol.21 , pp. 1129-1137
    • Ben-Shaul, Y.1    Bergman, H.2    Soreq, H.3
  • 19
    • 24644470505 scopus 로고    scopus 로고
    • Ontological analysis of gene expression data: Current tools, limitations, and open problems
    • Khatri, P. and Draghici, S. (2005) Ontological analysis of gene expression data: current tools, limitations, and open problems. Bioinformatics, 21, 3587-3595.
    • (2005) Bioinformatics , vol.21 , pp. 3587-3595
    • Khatri, P.1    Draghici, S.2
  • 20
    • 2342432868 scopus 로고    scopus 로고
    • Ontologizing gene-expression microarray data: Characterizing clusters with Gene Ontology
    • Robinson, P.N., Wollstein, A., Bohme, U. and Beattie, B. (2004) Ontologizing gene-expression microarray data: characterizing clusters with Gene Ontology. Bioinformatics, 20, 979-981.
    • (2004) Bioinformatics , vol.20 , pp. 979-981
    • Robinson, P.N.1    Wollstein, A.2    Bohme, U.3    Beattie, B.4
  • 21
    • 0042121055 scopus 로고    scopus 로고
    • Onto-Tools, the toolkit of the modern biologist: Onto-Express, Onto-Compare, Onto-Design and Onto-Translate
    • Draghici, S., Khatri, P., Bhavsar, P., Shah, A., Krawetz, S.A. and Tainsky, M.A. (2003) Onto-Tools, the toolkit of the modern biologist: Onto-Express, Onto-Compare, Onto-Design and Onto-Translate. Nucleic Acids Res., 31, 3775-3781.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 3775-3781
    • Draghici, S.1    Khatri, P.2    Bhavsar, P.3    Shah, A.4    Krawetz, S.A.5    Tainsky, M.A.6
  • 22
    • 3242887152 scopus 로고    scopus 로고
    • Onto-Tools: An ensemble of web-accessible, ontology-based tools for the functional design and interpretation of high-throughput gene expression experiments
    • Khatri, P., Bhavsar, P., Bawa, G. and Draghici, S. (2004) Onto-Tools: an ensemble of web-accessible, ontology-based tools for the functional design and interpretation of high-throughput gene expression experiments. Nucleic Acids Res., 32, W449-W456.
    • (2004) Nucleic Acids Res. , vol.32
    • Khatri, P.1    Bhavsar, P.2    Bawa, G.3    Draghici, S.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.