-
1
-
-
77649224964
-
Leading the Way: Canine Models of Genomics and Disease
-
doi:10.1242/dmm.004358
-
Shearin AL, Ostrander EA, (2010) Leading the Way: Canine Models of Genomics and Disease. Dis Model Mech 3: 27-34 doi:10.1242/dmm.004358.
-
(2010)
Dis Model Mech
, vol.3
, pp. 27-34
-
-
Shearin, A.L.1
Ostrander, E.A.2
-
2
-
-
79960266061
-
Dog models of naturally occurring cancer
-
doi:10.1016/j.molmed.2011.02.004
-
Rowell JL, McCarthy DO, Alvarez CE, (2011) Dog models of naturally occurring cancer. Trends Mol Med 17: 380-388 doi:10.1016/j.molmed.2011.02.004.
-
(2011)
Trends Mol Med
, vol.17
, pp. 380-388
-
-
Rowell, J.L.1
McCarthy, D.O.2
Alvarez, C.E.3
-
3
-
-
0033671255
-
Spontaneously occurring tumors of companion animals as models for human cancer
-
Vail DM, MacEwen EG, (2000) Spontaneously occurring tumors of companion animals as models for human cancer. Cancer Invest 18: 781-792.
-
(2000)
Cancer Invest
, vol.18
, pp. 781-792
-
-
Vail, D.M.1
MacEwen, E.G.2
-
4
-
-
39749114951
-
Evolutionarily conserved cytogenetic changes in hematological malignancies of dogs and humans-man and his best friend share more than companionship
-
doi:10.1007/s10577-007-1212-4
-
Breen M, Modiano JF, (2008) Evolutionarily conserved cytogenetic changes in hematological malignancies of dogs and humans-man and his best friend share more than companionship. Chromosome Res 16: 145-154 doi:10.1007/s10577-007-1212-4.
-
(2008)
Chromosome Res
, vol.16
, pp. 145-154
-
-
Breen, M.1
Modiano, J.F.2
-
5
-
-
12944271053
-
Cancer statistics, 2005
-
Jemal A, Murray T, Ward E, Samuels A, Tiwari RC, et al. (2005) Cancer statistics, 2005. CA Cancer J Clin 55: 10-30.
-
(2005)
CA Cancer J Clin
, vol.55
, pp. 10-30
-
-
Jemal, A.1
Murray, T.2
Ward, E.3
Samuels, A.4
Tiwari, R.C.5
-
6
-
-
84875939014
-
-
SEER Cancer Statistics Review 1975-2009 (Vintage 2009 Populations) (n.d.). Available:. Accessed 2012 Apr 25
-
SEER Cancer Statistics Review 1975-2009 (Vintage 2009 Populations) (n.d.). Available: http://seer.cancer.gov/csr/1975_2009_pops09/. Accessed 2012 Apr 25.
-
-
-
-
7
-
-
79952630131
-
The staging and treatment of multicentric high-grade lymphoma in dogs: A review of recent developments and future prospects
-
doi:10.1016/j.tvjl.2010.04.027
-
Marconato L, (2011) The staging and treatment of multicentric high-grade lymphoma in dogs: A review of recent developments and future prospects. The Veterinary Journal 188: 34-38 doi:10.1016/j.tvjl.2010.04.027.
-
(2011)
The Veterinary Journal
, vol.188
, pp. 34-38
-
-
Marconato, L.1
-
8
-
-
0142244341
-
Current trends in large cell lymphoma
-
doi:10.1038/sj.leu.2403096
-
Fisher RI, Shah P, (2003) Current trends in large cell lymphoma. Leukemia 17: 1948-1960 doi:10.1038/sj.leu.2403096.
-
(2003)
Leukemia
, vol.17
, pp. 1948-1960
-
-
Fisher, R.I.1
Shah, P.2
-
9
-
-
33745982067
-
Rituximab-CHOP versus CHOP alone or with maintenance rituximab in older patients with diffuse large B-cell lymphoma
-
doi:10.1200/JCO.2005.05.1003
-
Habermann TM, Weller EA, Morrison VA, Gascoyne RD, Cassileth PA, et al. (2006) Rituximab-CHOP versus CHOP alone or with maintenance rituximab in older patients with diffuse large B-cell lymphoma. J Clin Oncol 24: 3121-3127 doi:10.1200/JCO.2005.05.1003.
-
(2006)
J Clin Oncol
, vol.24
, pp. 3121-3127
-
-
Habermann, T.M.1
Weller, E.A.2
Morrison, V.A.3
Gascoyne, R.D.4
Cassileth, P.A.5
-
10
-
-
0027394689
-
Comparison of a standard regimen (CHOP) with three intensive chemotherapy regimens for advanced non-Hodgkin's lymphoma
-
doi:10.1056/NEJM199304083281404
-
Fisher RI, Gaynor ER, Dahlberg S, Oken MM, Grogan TM, et al. (1993) Comparison of a standard regimen (CHOP) with three intensive chemotherapy regimens for advanced non-Hodgkin's lymphoma. N Engl J Med 328: 1002-1006 doi:10.1056/NEJM199304083281404.
-
(1993)
N Engl J Med
, vol.328
, pp. 1002-1006
-
-
Fisher, R.I.1
Gaynor, E.R.2
Dahlberg, S.3
Oken, M.M.4
Grogan, T.M.5
-
11
-
-
46249130709
-
The beginning of the end for microarrays?
-
doi:10.1038/nmeth0708-585
-
Shendure J, (2008) The beginning of the end for microarrays? Nature Methods 5: 585-587 doi:10.1038/nmeth0708-585.
-
(2008)
Nature Methods
, vol.5
, pp. 585-587
-
-
Shendure, J.1
-
12
-
-
78751570979
-
RNA sequencing: advances, challenges and opportunities
-
doi:10.1038/nrg2934
-
Ozsolak F, Milos PM, (2011) RNA sequencing: advances, challenges and opportunities. Nat Rev Genet 12: 87-98 doi:10.1038/nrg2934.
-
(2011)
Nat Rev Genet
, vol.12
, pp. 87-98
-
-
Ozsolak, F.1
Milos, P.M.2
-
13
-
-
80053046353
-
Comparing Next-Generation Sequencing and Microarray Technologies in a Toxicological Study of the Effects of Aristolochic Acid on Rat Kidneys
-
doi:10.1021/tx200103b
-
Su Z, Li Z, Chen T, Li Q-Z, Fang H, et al. (2011) Comparing Next-Generation Sequencing and Microarray Technologies in a Toxicological Study of the Effects of Aristolochic Acid on Rat Kidneys. Chem Res Toxicol 24: 1486-1493 doi:10.1021/tx200103b.
-
(2011)
Chem Res Toxicol
, vol.24
, pp. 1486-1493
-
-
Su, Z.1
Li, Z.2
Chen, T.3
Li, Q.-Z.4
Fang, H.5
-
14
-
-
34347241740
-
Comparison of hybridization-based and sequencing-based gene expression technologies on biological replicates
-
doi:10.1186/1471-2164-8-153
-
Liu F, Jenssen T-K, Trimarchi J, Punzo C, Cepko C, et al. (2007) Comparison of hybridization-based and sequencing-based gene expression technologies on biological replicates. BMC Genomics 8: 153 doi:10.1186/1471-2164-8-153.
-
(2007)
BMC Genomics
, vol.8
, pp. 153
-
-
Liu, F.1
Jenssen, T.-K.2
Trimarchi, J.3
Punzo, C.4
Cepko, C.5
-
15
-
-
50649089207
-
RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays
-
doi:10.1101/gr.079558.108
-
Marioni JC, Mason CE, Mane SM, Stephens M, Gilad Y, (2008) RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays. Genome Research 18: 1509-1517 doi:10.1101/gr.079558.108.
-
(2008)
Genome Research
, vol.18
, pp. 1509-1517
-
-
Marioni, J.C.1
Mason, C.E.2
Mane, S.M.3
Stephens, M.4
Gilad, Y.5
-
16
-
-
57149085481
-
Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms
-
doi:10.1093/nar/gkn705
-
't Hoen PAC, Ariyurek Y, Thygesen HH, Vreugdenhil E, Vossen RHAM, et al. (2008) Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms. Nucleic Acids Res 36: e141 doi:10.1093/nar/gkn705.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
't Hoen, P.A.C.1
Ariyurek, Y.2
Thygesen, H.H.3
Vreugdenhil, E.4
Vossen, R.H.A.M.5
-
17
-
-
77951777930
-
A comparison of massively parallel nucleotide sequencing with oligonucleotide microarrays for global transcription profiling
-
doi:10.1186/1471-2164-11-282
-
Bradford J, Hey Y, Yates T, Li Y, Pepper S, et al. (2010) A comparison of massively parallel nucleotide sequencing with oligonucleotide microarrays for global transcription profiling. BMC Genomics 11: 282 doi:10.1186/1471-2164-11-282.
-
(2010)
BMC Genomics
, vol.11
, pp. 282
-
-
Bradford, J.1
Hey, Y.2
Yates, T.3
Li, Y.4
Pepper, S.5
-
18
-
-
79957665988
-
Microarrays, deep sequencing and the true measure of the transcriptome
-
doi:10.1186/1741-7007-9-34
-
Malone J, Oliver B, (2011) Microarrays, deep sequencing and the true measure of the transcriptome. BMC Biology 9: 34 doi:10.1186/1741-7007-9-34.
-
(2011)
BMC Biology
, vol.9
, pp. 34
-
-
Malone, J.1
Oliver, B.2
-
19
-
-
84859709264
-
Analysis of gene expression in canine sino-nasal aspergillosis and idiopathic lymphoplasmacytic rhinitis: A transcriptomic analysis
-
doi:10.1016/j.vetmic.2011.12.009
-
Vanherberghen M, Bureau F, Peters IR, Day MJ, Clercx C, et al. (2012) Analysis of gene expression in canine sino-nasal aspergillosis and idiopathic lymphoplasmacytic rhinitis: A transcriptomic analysis. Vet Microbiol 157: 143-151 doi:10.1016/j.vetmic.2011.12.009.
-
(2012)
Vet Microbiol
, vol.157
, pp. 143-151
-
-
Vanherberghen, M.1
Bureau, F.2
Peters, I.R.3
Day, M.J.4
Clercx, C.5
-
20
-
-
84857513660
-
A systems biology approach to identify molecular pathways altered by HDAC inhibition in osteosarcoma
-
doi:10.1002/jcb.23403
-
Wittenburg LA, Ptitsyn AA, Thamm DH, (2012) A systems biology approach to identify molecular pathways altered by HDAC inhibition in osteosarcoma. J Cell Biochem 113: 773-783 doi:10.1002/jcb.23403.
-
(2012)
J Cell Biochem
, vol.113
, pp. 773-783
-
-
Wittenburg, L.A.1
Ptitsyn, A.A.2
Thamm, D.H.3
-
21
-
-
46249103973
-
Stem cell transcriptome profiling via massive-scale mRNA sequencing
-
doi:10.1038/nmeth.1223
-
Cloonan N, Forrest ARR, Kolle G, Gardiner BBA, Faulkner GJ, et al. (2008) Stem cell transcriptome profiling via massive-scale mRNA sequencing. Nature Methods 5: 613-619 doi:10.1038/nmeth.1223.
-
(2008)
Nature Methods
, vol.5
, pp. 613-619
-
-
Cloonan, N.1
Forrest, A.R.R.2
Kolle, G.3
Gardiner, B.B.A.4
Faulkner, G.J.5
-
22
-
-
74049148179
-
3′ tag digital gene expression profiling of human brain and universal reference RNA using Illumina Genome Analyzer
-
doi:10.1186/1471-2164-10-531
-
Asmann Y, Klee E, Thompson EA, Perez E, Middha S, et al. (2009) 3′ tag digital gene expression profiling of human brain and universal reference RNA using Illumina Genome Analyzer. BMC Genomics 10: 531 doi:10.1186/1471-2164-10-531.
-
(2009)
BMC Genomics
, vol.10
, pp. 531
-
-
Asmann, Y.1
Klee, E.2
Thompson, E.A.3
Perez, E.4
Middha, S.5
-
23
-
-
65649083411
-
Estimating accuracy of RNA-Seq and microarrays with proteomics
-
doi:10.1186/1471-2164-10-161
-
Fu X, Fu N, Guo S, Yan Z, Xu Y, et al. (2009) Estimating accuracy of RNA-Seq and microarrays with proteomics. BMC Genomics 10: 161 doi:10.1186/1471-2164-10-161.
-
(2009)
BMC Genomics
, vol.10
, pp. 161
-
-
Fu, X.1
Fu, N.2
Guo, S.3
Yan, Z.4
Xu, Y.5
-
24
-
-
22244453416
-
A Robust Algorithm for Copy Number Detection Using High-Density Oligonucleotide Single Nucleotide Polymorphism Genotyping Arrays
-
doi:10.1158/0008-5472.CAN-05-0465
-
Nannya Y, Sanada M, Nakazaki K, Hosoya N, Wang L, et al. (2005) A Robust Algorithm for Copy Number Detection Using High-Density Oligonucleotide Single Nucleotide Polymorphism Genotyping Arrays. Cancer Res 65: 6071-6079 doi:10.1158/0008-5472.CAN-05-0465.
-
(2005)
Cancer Res
, vol.65
, pp. 6071-6079
-
-
Nannya, Y.1
Sanada, M.2
Nakazaki, K.3
Hosoya, N.4
Wang, L.5
-
25
-
-
0001677717
-
Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing
-
Benjamini Y, Hochberg Y, (1995) Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing. Journal of the Royal Statistical Society 57: 289-300.
-
(1995)
Journal of the Royal Statistical Society
, vol.57
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
26
-
-
84861548193
-
Summarizing and Correcting the GC Content Bias in High-Throughput Sequencing
-
Available:. Accessed 14 May 2012
-
Benjamini Y, Speed TP, (2012) Summarizing and Correcting the GC Content Bias in High-Throughput Sequencing. Nucl Acids Res Available:http://nar.oxfordjournals.org/content/early/2012/02/08/nar.gks001. Accessed 14 May 2012.
-
(2012)
Nucl Acids Res
-
-
Benjamini, Y.1
Speed, T.P.2
-
27
-
-
52649157765
-
Substantial biases in ultra-short read data sets from high-throughput DNA sequencing
-
doi:10.1093/nar/gkn425
-
Dohm JC, Lottaz C, Borodina T, Himmelbauer H, (2008) Substantial biases in ultra-short read data sets from high-throughput DNA sequencing. Nucleic Acids Res 36: e105 doi:10.1093/nar/gkn425.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Dohm, J.C.1
Lottaz, C.2
Borodina, T.3
Himmelbauer, H.4
-
28
-
-
79960557820
-
Bias detection and correction in RNA-Sequencing data
-
doi:10.1186/1471-2105-12-290
-
Zheng W, Chung LM, Zhao H, (2011) Bias detection and correction in RNA-Sequencing data. BMC Bioinformatics 12: 290 doi:10.1186/1471-2105-12-290.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 290
-
-
Zheng, W.1
Chung, L.M.2
Zhao, H.3
-
29
-
-
77950460661
-
Understanding mechanisms underlying human gene expression variation with RNA sequencing
-
doi:10.1038/nature08872
-
Pickrell JK, Marioni JC, Pai AA, Degner JF, Engelhardt BE, et al. (2010) Understanding mechanisms underlying human gene expression variation with RNA sequencing. Nature 464: 768-772 doi:10.1038/nature08872.
-
(2010)
Nature
, vol.464
, pp. 768-772
-
-
Pickrell, J.K.1
Marioni, J.C.2
Pai, A.A.3
Degner, J.F.4
Engelhardt, B.E.5
-
30
-
-
0034730140
-
Singular value decomposition for genome-wide expression data processing and modeling
-
Alter O, Brown PO, Botstein D, (2000) Singular value decomposition for genome-wide expression data processing and modeling. Proc Natl Acad Sci USA 97: 10101-10106.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 10101-10106
-
-
Alter, O.1
Brown, P.O.2
Botstein, D.3
-
31
-
-
0037452966
-
Generalized singular value decomposition for comparative analysis of genome-scale expression data sets of two different organisms
-
doi:10.1073/pnas.0530258100
-
Alter O, Brown PO, Botstein D, (2003) Generalized singular value decomposition for comparative analysis of genome-scale expression data sets of two different organisms. Proc Natl Acad Sci USA 100: 3351-3356 doi:10.1073/pnas.0530258100.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 3351-3356
-
-
Alter, O.1
Brown, P.O.2
Botstein, D.3
-
32
-
-
74049160758
-
A Factor Model Approach to Multiple Testing Under Dependence
-
doi:10.1198/jasa.2009.tm08332
-
Friguet C, Kloareg M, Causeur D, (2009) A Factor Model Approach to Multiple Testing Under Dependence. Journal of the American Statistical Association 104: 1406-1415 doi:10.1198/jasa.2009.tm08332.
-
(2009)
Journal of the American Statistical Association
, vol.104
, pp. 1406-1415
-
-
Friguet, C.1
Kloareg, M.2
Causeur, D.3
-
33
-
-
34848914038
-
Capturing heterogeneity in gene expression studies by surrogate variable analysis
-
doi:10.1371/journal.pgen.0030161
-
Leek JT, Storey JD, (2007) Capturing heterogeneity in gene expression studies by surrogate variable analysis. PLoS Genet 3: 1724-1735 doi:10.1371/journal.pgen.0030161.
-
(2007)
PLoS Genet
, vol.3
, pp. 1724-1735
-
-
Leek, J.T.1
Storey, J.D.2
-
34
-
-
57749084635
-
A general framework for multiple testing dependence
-
doi:10.1073/pnas.0808709105
-
Leek JT, Storey JD, (2008) A general framework for multiple testing dependence. Proc Natl Acad Sci USA 105: 18718-18723 doi:10.1073/pnas.0808709105.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 18718-18723
-
-
Leek, J.T.1
Storey, J.D.2
-
35
-
-
33746512512
-
Principal components analysis corrects for stratification in genome-wide association studies
-
doi:10.1038/ng1847
-
Price AL, Patterson NJ, Plenge RM, Weinblatt ME, Shadick NA, et al. (2006) Principal components analysis corrects for stratification in genome-wide association studies. Nat Genet 38: 904-909 doi:10.1038/ng1847.
-
(2006)
Nat Genet
, vol.38
, pp. 904-909
-
-
Price, A.L.1
Patterson, N.J.2
Plenge, R.M.3
Weinblatt, M.E.4
Shadick, N.A.5
-
37
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
doi:10.1186/gb-2009-10-3-r25
-
Langmead B, Trapnell C, Pop M, Salzberg SL, (2009) Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biology 10: R25 doi:10.1186/gb-2009-10-3-r25.
-
(2009)
Genome Biology
, vol.10
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
38
-
-
65449136284
-
TopHat: discovering splice junctions with RNA-Seq
-
doi:10.1093/bioinformatics/btp120
-
Trapnell C, Pachter L, Salzberg SL, (2009) TopHat: discovering splice junctions with RNA-Seq. Bioinformatics 25: 1105-1111 doi:10.1093/bioinformatics/btp120.
-
(2009)
Bioinformatics
, vol.25
, pp. 1105-1111
-
-
Trapnell, C.1
Pachter, L.2
Salzberg, S.L.3
-
39
-
-
80051941094
-
Identification of novel transcripts in annotated genomes using RNA-Seq
-
Available:. Accessed 9 August 2012
-
Roberts A, Pimentel H, Trapnell C, Pachter L, (2011) Identification of novel transcripts in annotated genomes using RNA-Seq. Bioinformatics Available:http://bioinformatics.oxfordjournals.org/content/early/2011/06/21/bioinformatics.btr355. Accessed 9 August 2012.
-
(2011)
Bioinformatics
-
-
Roberts, A.1
Pimentel, H.2
Trapnell, C.3
Pachter, L.4
-
40
-
-
79961135005
-
-
R Development Core Team, R Foundation for Statistical Computing. Available
-
R Development Core Team (2011) R: A language and environment for statistical computing. R Foundation for Statistical Computing. Available:http://www.R-project.org.
-
(2011)
R: A language and environment for statistical computing
-
-
-
41
-
-
28744458859
-
Bioconductor: open software development for computational biology and bioinformatics
-
doi:10.1186/gb-2004-5-10-r80
-
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, et al. (2004) Bioconductor: open software development for computational biology and bioinformatics. Genome Biol 5: R80 doi:10.1186/gb-2004-5-10-r80.
-
(2004)
Genome Biol
, vol.5
-
-
Gentleman, R.C.1
Carey, V.J.2
Bates, D.M.3
Bolstad, B.4
Dettling, M.5
-
42
-
-
84859098571
-
The sva package for removing batch effects and other unwanted variation in high-throughput experiments
-
doi:10.1093/bioinformatics/bts034
-
Leek JT, Johnson WE, Parker HS, Jaffe AE, Storey JD, (2012) The sva package for removing batch effects and other unwanted variation in high-throughput experiments. Bioinformatics 28: 882-883 doi:10.1093/bioinformatics/bts034.
-
(2012)
Bioinformatics
, vol.28
, pp. 882-883
-
-
Leek, J.T.1
Johnson, W.E.2
Parker, H.S.3
Jaffe, A.E.4
Storey, J.D.5
-
43
-
-
84858314394
-
BioMart: driving a paradigm change in biological data management
-
doi:10.1093/database/bar049
-
Kasprzyk A, (2011) BioMart: driving a paradigm change in biological data management. Database (Oxford) 2011: bar049 doi:10.1093/database/bar049.
-
(2011)
Database (Oxford)
, vol.2011
-
-
Kasprzyk, A.1
-
44
-
-
41149089793
-
SeqinR 1.0-2: A Contributed Package to the R Project for Statistical Computing Devoted to Biological Sequences Retrieval and Analysis
-
In: Bastolla U, Porto M, Roman HE, Vendruscolo M, editors, Berlin, Heidelberg: Springer Berlin Heidelberg
-
Charif D, Lobry JR (2007) SeqinR 1.0-2: A Contributed Package to the R Project for Statistical Computing Devoted to Biological Sequences Retrieval and Analysis. In: Bastolla U, Porto M, Roman HE, Vendruscolo M, editors. Structural Approaches to Sequence Evolution. Berlin, Heidelberg: Springer Berlin Heidelberg. pp. 207-232. Available: http://www.springer.com/physics/biophysics%26biologicalphysics/book/978-3-540-35305-8. Accessed 2012 May 7.
-
(2007)
Structural Approaches to Sequence Evolution
, pp. 207-232
-
-
Charif, D.1
Lobry, J.R.2
-
45
-
-
70349255569
-
-
Oksanen J, Blanchet FG, Kindt R, Legendre P, Minchin PR, et al. (2012) vegan: Community Ecology Package. Available: http://CRAN.R-project.org/package=vegan.
-
(2012)
vegan: Community Ecology Package. Available
-
-
Oksanen, J.1
Blanchet, F.G.2
Kindt, R.3
Legendre, P.4
Minchin, P.R.5
-
46
-
-
65549138481
-
Identifying disease-specific genes based on their topological significance in protein networks
-
doi:10.1186/1752-0509-3-36
-
Dezso{double acute} Z, Nikolsky Y, Nikolskaya T, Miller J, Cherba D, et al. (2009) Identifying disease-specific genes based on their topological significance in protein networks. BMC Systems Biology 3: 36 doi:10.1186/1752-0509-3-36.
-
(2009)
BMC Systems Biology
, vol.3
, pp. 36
-
-
Dezso, Z.1
Nikolsky, Y.2
Nikolskaya, T.3
Miller, J.4
Cherba, D.5
-
47
-
-
80455126001
-
Evaluation of genomic high-throughput sequencing data generated on Illumina HiSeq and Genome Analyzer systems
-
doi:10.1186/gb-2011-12-11-r112
-
Minoche AE, Dohm JC, Himmelbauer H, (2011) Evaluation of genomic high-throughput sequencing data generated on Illumina HiSeq and Genome Analyzer systems. Genome Biol 12: R112 doi:10.1186/gb-2011-12-11-r112.
-
(2011)
Genome Biol
, vol.12
-
-
Minoche, A.E.1
Dohm, J.C.2
Himmelbauer, H.3
-
48
-
-
33645053483
-
Distance-based tests for homogeneity of multivariate dispersions
-
doi:10.1111/j.1541-0420.2005.00440.x
-
Anderson MJ, (2006) Distance-based tests for homogeneity of multivariate dispersions. Biometrics 62: 245-253 doi:10.1111/j.1541-0420.2005.00440.x.
-
(2006)
Biometrics
, vol.62
, pp. 245-253
-
-
Anderson, M.J.1
-
50
-
-
0028844581
-
Expression of multidrug resistance-associated protein in NIH/3T3 cells confers multidrug resistance associated with increased drug efflux and altered intracellular drug distribution
-
Breuninger LM, Paul S, Gaughan K, Miki T, Chan A, et al. (1995) Expression of multidrug resistance-associated protein in NIH/3T3 cells confers multidrug resistance associated with increased drug efflux and altered intracellular drug distribution. Cancer Res 55: 5342-5347.
-
(1995)
Cancer Res
, vol.55
, pp. 5342-5347
-
-
Breuninger, L.M.1
Paul, S.2
Gaughan, K.3
Miki, T.4
Chan, A.5
-
51
-
-
84858068675
-
Removing technical variability in RNA-seq data using conditional quantile normalization
-
doi:10.1093/biostatistics/kxr054
-
Hansen KD, Irizarry RA, Wu Z, (2012) Removing technical variability in RNA-seq data using conditional quantile normalization. Biostatistics 13: 204-216 doi:10.1093/biostatistics/kxr054.
-
(2012)
Biostatistics
, vol.13
, pp. 204-216
-
-
Hansen, K.D.1
Irizarry, R.A.2
Wu, Z.3
-
52
-
-
79959437696
-
Mixed-Model Coexpression: Calculating Gene Coexpression While Accounting for Expression Heterogeneity
-
doi:10.1093/bioinformatics/btr221
-
Furlotte NA, Kang HM, Ye C, Eskin E, (2011) Mixed-Model Coexpression: Calculating Gene Coexpression While Accounting for Expression Heterogeneity. Bioinformatics 27: i288-i294 doi:10.1093/bioinformatics/btr221.
-
(2011)
Bioinformatics
, vol.27
-
-
Furlotte, N.A.1
Kang, H.M.2
Ye, C.3
Eskin, E.4
-
53
-
-
84857368158
-
Annotation of the domestic dog genome sequence: finding the missing genes
-
doi:10.1007/s00335-011-9372-0
-
Derrien T, Vaysse A, André C, Hitte C, (2012) Annotation of the domestic dog genome sequence: finding the missing genes. Mamm Genome 23: 124-131 doi:10.1007/s00335-011-9372-0.
-
(2012)
Mamm Genome
, vol.23
, pp. 124-131
-
-
Derrien, T.1
Vaysse, A.2
André, C.3
Hitte, C.4
-
54
-
-
47649124124
-
A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome
-
doi:10.1126/science.1160342
-
Sultan M, Schulz MH, Richard H, Magen A, Klingenhoff A, et al. (2008) A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome. Science 321: 956-960 doi:10.1126/science.1160342.
-
(2008)
Science
, vol.321
, pp. 956-960
-
-
Sultan, M.1
Schulz, M.H.2
Richard, H.3
Magen, A.4
Klingenhoff, A.5
-
55
-
-
79956026681
-
Functional analysis of expressed sequence tags from the liver and brain of Korean Jindo dogs
-
doi:10.5483/BMBRep.2011.44.4.238
-
Kim JY, Park HS, Lim D, Jang HC, Park HS, et al. (2011) Functional analysis of expressed sequence tags from the liver and brain of Korean Jindo dogs. BMB Rep 44: 238-243 doi:10.5483/BMBRep.2011.44.4.238.
-
(2011)
BMB Rep
, vol.44
, pp. 238-243
-
-
Kim, J.Y.1
Park, H.S.2
Lim, D.3
Jang, H.C.4
Park, H.S.5
-
56
-
-
79952230540
-
Removing Batch Effects in Analysis of Expression Microarray Data: An Evaluation of Six Batch Adjustment Methods
-
doi:10.1371/journal.pone.0017238
-
Chen C, Grennan K, Badner J, Zhang D, Gershon E, et al. (2011) Removing Batch Effects in Analysis of Expression Microarray Data: An Evaluation of Six Batch Adjustment Methods. PLoS ONE 6: e17238 doi:10.1371/journal.pone.0017238.
-
(2011)
PLoS ONE
, vol.6
-
-
Chen, C.1
Grennan, K.2
Badner, J.3
Zhang, D.4
Gershon, E.5
-
57
-
-
77958471357
-
Differential expression analysis for sequence count data
-
doi:10.1186/gb-2010-11-10-r106
-
Anders S, Huber W, (2010) Differential expression analysis for sequence count data. Genome Biology 11: R106 doi:10.1186/gb-2010-11-10-r106.
-
(2010)
Genome Biology
, vol.11
-
-
Anders, S.1
Huber, W.2
-
58
-
-
77953176036
-
A scaling normalization method for differential expression analysis of RNA-seq data
-
doi:10.1186/gb-2010-11-3-r25
-
Robinson MD, Oshlack A, (2010) A scaling normalization method for differential expression analysis of RNA-seq data. Genome Biology 11: R25 doi:10.1186/gb-2010-11-3-r25.
-
(2010)
Genome Biology
, vol.11
-
-
Robinson, M.D.1
Oshlack, A.2
-
59
-
-
79952775180
-
Transcriptomes of the B and T lineages compared by multiplatform microarray profiling
-
doi:10.4049/jimmunol.1002695
-
Painter MW, Davis S, Hardy RR, Mathis D, Benoist C, (2011) Transcriptomes of the B and T lineages compared by multiplatform microarray profiling. J Immunol 186: 3047-3057 doi:10.4049/jimmunol.1002695.
-
(2011)
J Immunol
, vol.186
, pp. 3047-3057
-
-
Painter, M.W.1
Davis, S.2
Hardy, R.R.3
Mathis, D.4
Benoist, C.5
-
60
-
-
80755139573
-
Targeting the PI3K/AKT/mTOR pathway in non-Hodgkin's lymphoma: results, biology, and development strategies
-
doi:10.1007/s11912-011-0187-7
-
Schatz JH, (2011) Targeting the PI3K/AKT/mTOR pathway in non-Hodgkin's lymphoma: results, biology, and development strategies. Curr Oncol Rep 13: 398-406 doi:10.1007/s11912-011-0187-7.
-
(2011)
Curr Oncol Rep
, vol.13
, pp. 398-406
-
-
Schatz, J.H.1
-
61
-
-
79955032729
-
Signal transduction inhibitor therapy for lymphoma
-
doi:10.1182/asheducation-2010.1.265
-
Witzig TE, Gupta M, (2010) Signal transduction inhibitor therapy for lymphoma. Hematology Am Soc Hematol Educ Program 2010: 265-270 doi:10.1182/asheducation-2010.1.265.
-
(2010)
Hematology Am Soc Hematol Educ Program
, vol.2010
, pp. 265-270
-
-
Witzig, T.E.1
Gupta, M.2
-
62
-
-
84861815445
-
CD19 is a major B cell receptor-independent activator of MYC-driven B-lymphomagenesis
-
Available:. Accessed 7 May 2012
-
Chung EY, Psathas JN, Yu D, Li Y, Weiss MJ, et al. (2012) CD19 is a major B cell receptor-independent activator of MYC-driven B-lymphomagenesis. The Journal of clinical investigation Available:http://www.ncbi.nlm.nih.gov/pubmed/22546857. Accessed 7 May 2012.
-
(2012)
The Journal of Clinical Investigation
-
-
Chung, E.Y.1
Psathas, J.N.2
Yu, D.3
Li, Y.4
Weiss, M.J.5
-
63
-
-
0034254421
-
B Cell Antigen Receptor-Induced Activation of Akt Promotes B Cell Survival and Is Dependent on Syk Kinase
-
Pogue SL, Kurosaki T, Bolen J, Herbst R, (2000) B Cell Antigen Receptor-Induced Activation of Akt Promotes B Cell Survival and Is Dependent on Syk Kinase. J Immunol 165: 1300-1306.
-
(2000)
J Immunol
, vol.165
, pp. 1300-1306
-
-
Pogue, S.L.1
Kurosaki, T.2
Bolen, J.3
Herbst, R.4
-
64
-
-
67650398258
-
Differential efficacy of bortezomib plus chemotherapy within molecular subtypes of diffuse large B-cell lymphoma
-
doi:10.1182/blood-2009-01-199679
-
Dunleavy K, Pittaluga S, Czuczman MS, Dave SS, Wright G, et al. (2009) Differential efficacy of bortezomib plus chemotherapy within molecular subtypes of diffuse large B-cell lymphoma. Blood 113: 6069-6076 doi:10.1182/blood-2009-01-199679.
-
(2009)
Blood
, vol.113
, pp. 6069-6076
-
-
Dunleavy, K.1
Pittaluga, S.2
Czuczman, M.S.3
Dave, S.S.4
Wright, G.5
-
65
-
-
78649391451
-
Improving outcomes for patients with diffuse large B-cell lymphoma
-
doi:10.3322/caac.20087
-
Flowers CR, Sinha R, Vose JM, (2010) Improving outcomes for patients with diffuse large B-cell lymphoma. CA Cancer J Clin 60: 393-408 doi:10.3322/caac.20087.
-
(2010)
CA Cancer J Clin
, vol.60
, pp. 393-408
-
-
Flowers, C.R.1
Sinha, R.2
Vose, J.M.3
-
66
-
-
84859609556
-
How I treat HIV-associated lymphoma
-
doi:10.1182/blood-2011-08-373738
-
Dunleavy K, Wilson WH, (2012) How I treat HIV-associated lymphoma. Blood 119: 3245-3255 doi:10.1182/blood-2011-08-373738.
-
(2012)
Blood
, vol.119
, pp. 3245-3255
-
-
Dunleavy, K.1
Wilson, W.H.2
-
67
-
-
84875926209
-
Evidence of an oncogenic gammaherpesvirus in domestic dogs
-
Available:. Accessed 2012 Mar 12., Available:. Accessed 2012 Mar 12
-
Huang S-H, Kozak PJ, Kim J, Habineza-Ndikuyeze G, Meade C, et al. (n.d.) Evidence of an oncogenic gammaherpesvirus in domestic dogs. Virology. Available: http://www.sciencedirect.com/science/article/pii/S0042682212001183. Accessed 2012 Mar 12.
-
Virology
-
-
Huang, S.-H.1
Kozak, P.J.2
Kim, J.3
Habineza-Ndikuyeze, G.4
Meade, C.5
-
68
-
-
79954593154
-
Serological detection of Epstein-Barr virus infection in dogs and cats
-
doi:10.1016/j.vetmic.2010.12.013
-
Milman G, Smith KC, Erles K, (2011) Serological detection of Epstein-Barr virus infection in dogs and cats. Vet Microbiol 150: 15-20 doi:10.1016/j.vetmic.2010.12.013.
-
(2011)
Vet Microbiol
, vol.150
, pp. 15-20
-
-
Milman, G.1
Smith, K.C.2
Erles, K.3
-
69
-
-
0030321845
-
The F-MACHOP regimen in the treatment of aggressive non-Hodgkin's lymphomas: a single center experience in 72 patients
-
Infanti L, Silvestri F, Fanin R, Salmaso F, Zaja F, et al. (1996) The F-MACHOP regimen in the treatment of aggressive non-Hodgkin's lymphomas: a single center experience in 72 patients. Haematologica 81: 521-528.
-
(1996)
Haematologica
, vol.81
, pp. 521-528
-
-
Infanti, L.1
Silvestri, F.2
Fanin, R.3
Salmaso, F.4
Zaja, F.5
-
70
-
-
82755182374
-
Moving forward with new data and approaches: a fresh look at anthracyclines in non-Hodgkin's lymphoma
-
doi:10.4081/hr.2011.s3.e1
-
Amadori D, (2011) Moving forward with new data and approaches: a fresh look at anthracyclines in non-Hodgkin's lymphoma. Hematol Rep 3: e1 doi:10.4081/hr.2011.s3.e1.
-
(2011)
Hematol Rep
, vol.3
-
-
Amadori, D.1
|