Generation of arming yeasts with active proteins and peptides via cell surface display system: Cell surface engineering, Bio-arming technology

Methods in Molecular Biology

Volumn 1152, Issue , 2014, Pages 137-155

  Kuroda, Kouichi ^a   Ueda, Mitsuyoshi ^a  

^a NONE

Author keywords

Arming yeast; Cell surface display; Cell surface engineering; Molecular tool for high throughput screening; Single cell analysis; Whole cell biocatalyst; Yeast cell chip

Indexed keywords

PEPTIDE DERIVATIVE; PROTEIN DERIVATIVE; MATING FACTOR; PEPTIDE; RECOMBINANT PROTEIN;

ARTICLE; BIOCATALYST; CELL ENGINEERING; CELL SURFACE DISPLAY; FLOW CYTOMETRY; HIGH THROUGHPUT SCREENING; IMMUNOFLUORESCENCE; NONHUMAN; PRIORITY JOURNAL; SINGLE CELL ANALYSIS; YEAST; CYTOLOGY; FLUORESCENT ANTIBODY TECHNIQUE; GENETIC ENGINEERING; GENETIC TRANSFORMATION; GENETICS; METABOLISM; PLASMID; PROCEDURES; SACCHAROMYCES CEREVISIAE;

FLOW CYTOMETRY; FLUORESCENT ANTIBODY TECHNIQUE; GENETIC ENGINEERING; PEPTIDES; PLASMIDS; RECOMBINANT PROTEINS; SACCHAROMYCES CEREVISIAE; TRANSFORMATION, GENETIC;

EID: 84921425117     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-4939-0563-8_8     Document Type: Article

References (43)

1. Anonymous (1997) Arming yeast with cellsurface catalysts. Chem Eng News 75:32
2. Ueda M, Tanaka A (2000) Genetic immobilization of proteins on the yeast cell surface. Biotechnol Adv 18:121–140
3. Ueda M, Tanaka A (2000) Cell surface engineering of yeast: construction of arming yeast with biocatalyst. J Biosci Bioeng 90:125–136
4. Kuroda K, Ueda M (2010) Engineering of microorganisms towards recovery of rare metal ions. Appl Microbiol Biotechnol 87:53–60
5. Kuroda K, Ueda M (2011) Molecular design of the microbial cell surface toward the recovery of metal ions. Curr Opin Biotechnol 22:427–433
6. Kuroda K, Ueda M (2011) Cell surface engineering of yeast for applications in white biotechnology. Biotechnol Lett 33:1–9
7. Georgiou G, Poetschke HL, Stathopoulos C, Francisco JA (1993) Practical applications of engineering gram-negative bacterial cell surfaces. Trends Biotechnol 11:6–10
8. Chen W, Georgiou G (2002) Cell-Surface display of heterologous proteins: from highthroughput screening to environmental applications. Biotechnol Bioeng 79:496–503
9. Yeung YA, Wittrup KD (2002) Quantitative screening of yeast surface-displayed polypeptide libraries by magnetic bead capture. Biotechnol Prog 18:212–220
10. Boder ET, Wittrup KD (1997) Yeast surface display for screening combinatorial polypeptide libraries. Nat Biotechnol 15:553–557
11. Fukuda T, Kato-Murai M, Suye S, Ueda M (2007) Development of high-throughputscreening system by single-cell reaction using microchamber array chip. J Biosci Bioeng 104:241–243
12. Aoki W, Yoshino Y, Morisaka H, Tsunetomo K, Koyo H, Kamiya S, Kawata N, Kuroda K, Ueda M (2011) High-throughput screening of improved protease inhibitors using a yeast cell surface display system and a yeast cell chip. J Biosci Bioeng 111:16–18
13. Fukuda T, Kato-Murai M, Kadonosono T, Sahara H, Hata Y, Suye S, Ueda M (2007) Enhancement of substrate recognition ability by combinatorial mutation of β-glucosidase displayed on the yeast cell surface. Appl Microbiol Biotechnol 76:1027–1033
14. Matsumoto T, Fukuda H, Ueda M, Tanaka A, Kondo A (2002) Construction of yeast strains with high cell surface lipase activity by using novel display systems based on the Flo1p fl occulation functional domain. Appl Environ Microbiol 68:4517–4522
15. Shibasaki S, Ueda M, Iizuka T, Hirayama M, Ikeda Y, Kamasawa N, Osumi M, Tanaka A (2001) Quantitative evaluation of the enhanced green fl uorescent protein displayed on the cell surface of Saccharomyces cerevisiae by fl uorometric and confocal laser scanning microscopic analyses. Appl Microbiol Biotechnol 55:471–475
16. Fujita Y, Ito J, Ueda M, Fukuda H, Kondo A (2004) Synergistic saccharifi cation, and direct fermentation to ethanol, of amorphous cellulose by use of an engineered yeast strain codisplaying three types of cellulolytic enzyme. Appl Environ Microbiol 70:1207–1212
17. Murai T, Ueda M, Atomi H, Shibasaki Y, Kamasawa N, Osumi M, Kawaguchi T, Arai M, Tanaka A (1997) Genetic immobilization of cellulase on the cell surface of Saccharomyces cerevisiae. Appl Microbiol Biotechnol 48:499–503
18. Murai T, Ueda M, Kawaguchi T, Arai M, Tanaka A (1998) Assimilation of cellooligosaccharides by a cell surface-engineered yeast expressing β-glucosidase and carboxymethylcellulase from Aspergillus aculeatus. Appl Environ Microbiol 64:4857–4861
19. Murai T, Ueda M, Shibasaki Y, Kamasawa N, Osumi M, Imanaka T, Tanaka A (1999) Development of an arming yeast strain for effi - cient utilization of starch by co-display of sequential amylolytic enzymes on the cell surface. Appl Microbiol Biotechnol 51:65–70
20. Murai T, Ueda M, Yamamura M, Atomi H, Shibasaki Y, Kamasawa N, Osumi M, Amachi T, Tanaka A (1997) Construction of a starchutilizing yeast by cell surface engineering. Appl Environ Microbiol 63:1362–1366
21. Katahira S, Fujita Y, Mizuike A, Fukuda H, Kondo A (2004) Construction of a xylanfermenting yeast strain through codisplay of xylanolytic enzymes on the surface of xyloseutilizing Saccharomyces cerevisiae cells. Appl Environ Microbiol 70:5407–5414
22. Katahira S, Mizuike A, Fukuda H, Kondo A (2006) Ethanol fermentation from lignocellulosic hydrolysate by a recombinant xylose- and cellooligosaccharide-assimilating yeast strain. Appl Microbiol Biotechnol 72:1136–1143
23. Kuroda K, Shibasaki S, Ueda M, Tanaka A (2001) Cell surface-engineered yeast displaying a histidine oligopeptide (hexa-His) has enhanced adsorption of and tolerance to heavy metal ions. Appl Microbiol Biotechnol 57:697–701
24. Kuroda K, Ueda M, Shibasaki S, Tanaka A (2002) Cell surface-engineered yeast with ability to bind, and self-aggregate in response to, copper ion. Appl Microbiol Biotechnol 59:259–264
25. Kuroda K, Ueda M (2003) Bioadsorption of cadmium ion by cell surface-engineered yeasts displaying metallothionein and hexa-His. Appl Microbiol Biotechnol 63:182–186
26. Kuroda K, Ueda M (2006) Effective display of metallothionein tandem repeats on the bioadsorption of cadmium ion. Appl Microbiol Biotechnol 70:458–463
27. Kaya M, Ito J, Kotaka A, Matsumura K, Bando H, Sahara H, Ogino C, Shibasaki S, Kuroda K, Ueda M, Kondo A, Hata Y (2008) Isofl avone aglycones production from isofl avone glycosides by display of β-glucosidase from Aspergillus oryzae on yeast cell surface. Appl Microbiol Biotechnol 79:51–60
28. Inaba C, Higuchi S, Morisaka H, Kuroda K, Ueda M (2010) Synthesis of functional dipeptide carnosine from nonprotected amino acids using carnosinase-displaying yeast cells. Appl Microbiol Biotechnol 86:1895–1902
29. Yasui M, Shibasaki S, Kuroda K, Ueda M, Kawada N, Nishikawa J, Nishihara T, Tanaka A (2002) An arming yeast with the ability to entrap fl uorescent 17β-estradiol on the cell surface. Appl Microbiol Biotechnol 59:329–331
30. Takayama K, Suye S, Kuroda K, Ueda M, Kitaguchi T, Tsuchiyama K, Fukuda T, Chen W, Mulchandani A (2006) Surface display of organophosphorus hydrolase on Saccharomyces cerevisiae. Biotechnol Prog 22:939–943
31. Fushimi T, Miura N, Shintani H, Tsunoda H, Kuroda K, Ueda M (2012) Mutant fi refl y luciferases with improved specifi c activity and dATP discrimination constructed by yeast cell surface engineering. Appl Microbiol Biotechnol 97:4003–4011
32. Kuroda K, Nishitani T, Ueda M (2012) Specifi c adsorption of tungstate by cell surface display of the newly designed ModE mutant. Appl Microbiol Biotechnol 96:153–159
33. Nakanishi A, Bae J, Kuroda K, Ueda M (2012) Construction of a novel selection system for endoglucanases exhibiting carbohydrate- binding modules optimized for biomass using yeast cellsurface engineering. AMB Express 2:56
34. Fukuda T, Shiraga S, Kato M, Suye S, Ueda M (2006) Construction of a cultivation system of a yeast single cell in a cell chip microchamber. Biotechnol Prog 22:944–948
35. Isogawa D, Fukuda T, Kuroda K, Kusaoke H, Kimoto H, Suye S, Ueda M (2009) Demonstration of catalytic proton acceptor of chitosanase from Paenibacillus fukuinensis by comprehensive analysis of mutant library. Appl Microbiol Biotechnol 85:95–104
36. Shimoi H, Kitagaki H, Ohmori H, Iimura Y, Ito K (1998) Sed1p is a major cell wall protein of Saccharomyces cerevisiae in the stationary phase and is involved in lytic enzyme resistance. J Bacteriol 180:3381–3387
37. Kuroda K, Matsui K, Higuchi S, Kotaka A, Sahara H, Hata Y, Ueda M (2009) Enhancement of display effi ciency in yeast display system by vector engineering and gene disruption. Appl Microbiol Biotechnol 82:713–719
38. Brenner C, Fuller RS (1992) Structural and enzymatic characterization of a purifi ed prohormone- processing enzyme: secreted, soluble Kex2 protease. Proc Natl Acad Sci USA 89:922–926
39. Ito H, Fukuda Y, Murata K, Kimura A (1983) Transformation of intact yeast cells treated with alkali cations. J Bacteriol 153:163–168
40. 2+ -mediated expression of foreign genes in yeast. Gene 104:107–111
41. Mizuno K, Nakamura T, Ohshima T, Tanaka S, Matsuo H (1989) Characterization of KEX2 - encoded endopeptidase from yeast Saccharomyces cerevisiae. Biochem Biophys Res Commun 159:305–311
42. Sikorski RS, Hieter P (1989) A system of shuttle vectors and yeast host strains designed for effi cient manipulation of DNA in Saccharomyces cerevisiae. Genetics 122:19–27
43. Washida M, Takahashi S, Ueda M, Tanaka A (2001) Spacer-mediated display of active lipase on the yeast cell surface. Appl Microbiol Biotechnol 56:681–686