메뉴 건너뛰기




Volumn 165, Issue 1, 2015, Pages 18-27

Epigenetic regulation of open chromatin in pluripotent stem cells

Author keywords

[No Author keywords available]

Indexed keywords

DNA; HISTONE; TRANSCRIPTION FACTOR; UNTRANSLATED RNA; CHROMATIN; NONHISTONE PROTEIN; NUCLEOSOME;

EID: 84919876453     PISSN: 19315244     EISSN: 18781810     Source Type: Journal    
DOI: 10.1016/j.trsl.2014.03.004     Document Type: Review
Times cited : (19)

References (103)
  • 1
    • 33747195353 scopus 로고    scopus 로고
    • Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors
    • K. Takahashi, and S. Yamanaka Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors Cell 126 2006 663 676
    • (2006) Cell , vol.126 , pp. 663-676
    • Takahashi, K.1    Yamanaka, S.2
  • 2
    • 84865727393 scopus 로고    scopus 로고
    • The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression
    • T. Derrien, R. Johnson, and G. Bussotti The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression Genome Res 22 2012 1775 1789
    • (2012) Genome Res , vol.22 , pp. 1775-1789
    • Derrien, T.1    Johnson, R.2    Bussotti, G.3
  • 3
    • 84865839598 scopus 로고    scopus 로고
    • Long noncoding RNAs are rarely translated in two human cell lines
    • B. Banfai, H. Jia, and J. Khatun Long noncoding RNAs are rarely translated in two human cell lines Genome Res 22 2012 1646 1657
    • (2012) Genome Res , vol.22 , pp. 1646-1657
    • Banfai, B.1    Jia, H.2    Khatun, J.3
  • 4
    • 84865790047 scopus 로고    scopus 로고
    • An integrated encyclopedia of DNA elements in the human genome
    • T.E.P. Consortium An integrated encyclopedia of DNA elements in the human genome Nature 489 2012 57 74
    • (2012) Nature , vol.489 , pp. 57-74
    • Consortium, T.E.P.1
  • 5
    • 84891771466 scopus 로고    scopus 로고
    • The UCSC genome browser database: 2014 update
    • D. Karolchik, G.P. Barber, and J. Casper The UCSC genome browser database: 2014 update Nucl Acids Res 42 2014 D764 D770
    • (2014) Nucl Acids Res , vol.42 , pp. 764-D770
    • Karolchik, D.1    Barber, G.P.2    Casper, J.3
  • 7
    • 84878292277 scopus 로고    scopus 로고
    • Transcriptional and epigenetic dynamics during specification of human embryonic stem cells
    • C.A. Gifford, M.J. Ziller, and H. Gu Transcriptional and epigenetic dynamics during specification of human embryonic stem cells Cell 153 2013 1149 1163
    • (2013) Cell , vol.153 , pp. 1149-1163
    • Gifford, C.A.1    Ziller, M.J.2    Gu, H.3
  • 8
    • 84878282421 scopus 로고    scopus 로고
    • Epigenomic analysis of multilineage differentiation of human embryonic stem cells
    • W. Xie, M.D. Schultz, and R. Lister Epigenomic analysis of multilineage differentiation of human embryonic stem cells Cell 153 2013 1134 1148
    • (2013) Cell , vol.153 , pp. 1134-1148
    • Xie, W.1    Schultz, M.D.2    Lister, R.3
  • 9
    • 77956649353 scopus 로고    scopus 로고
    • Parallel gateways to pluripotency: Open chromatin in stem cells and development
    • F.M. Koh, M. Sachs, M. Guzman-Ayala, and M. Ramalho-Santos Parallel gateways to pluripotency: open chromatin in stem cells and development Curr Opin Genet Dev 20 2010 492 499
    • (2010) Curr Opin Genet Dev , vol.20 , pp. 492-499
    • Koh, F.M.1    Sachs, M.2    Guzman-Ayala, M.3    Ramalho-Santos, M.4
  • 11
    • 77954819820 scopus 로고    scopus 로고
    • Chromatin plasticity and genome organization in pluripotent embryonic stem cells
    • A. Mattout, and E. Meshorer Chromatin plasticity and genome organization in pluripotent embryonic stem cells Curr Opin Cell Biol 22 2010 334 341
    • (2010) Curr Opin Cell Biol , vol.22 , pp. 334-341
    • Mattout, A.1    Meshorer, E.2
  • 12
    • 33745865934 scopus 로고    scopus 로고
    • Chromatin in pluripotent embryonic stem cells and differentiation
    • E. Meshorer, and T. Misteli Chromatin in pluripotent embryonic stem cells and differentiation Nat Rev Mol Cell Biol 7 2006 540 546
    • (2006) Nat Rev Mol Cell Biol , vol.7 , pp. 540-546
    • Meshorer, E.1    Misteli, T.2
  • 13
    • 33947301272 scopus 로고    scopus 로고
    • Epigenetic signatures of stem-cell identity
    • M. Spivakov, and A.G. Fisher Epigenetic signatures of stem-cell identity Nat Rev Genet 8 2007 263 271
    • (2007) Nat Rev Genet , vol.8 , pp. 263-271
    • Spivakov, M.1    Fisher, A.G.2
  • 14
    • 77957970498 scopus 로고    scopus 로고
    • Epigenetic modifications in pluripotent and differentiated cells
    • A. Meissner Epigenetic modifications in pluripotent and differentiated cells Nat Biotechnol 28 2010 1079 1088
    • (2010) Nat Biotechnol , vol.28 , pp. 1079-1088
    • Meissner, A.1
  • 15
    • 79958252915 scopus 로고    scopus 로고
    • Chromatin connections to pluripotency and cellular reprogramming
    • S.H. Orkin, and K. Hochedlinger Chromatin connections to pluripotency and cellular reprogramming Cell 145 2011 835 850
    • (2011) Cell , vol.145 , pp. 835-850
    • Orkin, S.H.1    Hochedlinger, K.2
  • 16
    • 78049378982 scopus 로고    scopus 로고
    • Chromatin regulatory mechanisms in pluripotency
    • J.A. Lessard, and G.R. Crabtree Chromatin regulatory mechanisms in pluripotency Annu Rev Cell Dev Biol 26 2010 503 532
    • (2010) Annu Rev Cell Dev Biol , vol.26 , pp. 503-532
    • Lessard, J.A.1    Crabtree, G.R.2
  • 17
    • 79953163994 scopus 로고    scopus 로고
    • Chromatin states in pluripotent, differentiated, and reprogrammed cells
    • C.L. Fisher, and A.G. Fisher Chromatin states in pluripotent, differentiated, and reprogrammed cells Curr Opin Genet Dev 21 2011 140 146
    • (2011) Curr Opin Genet Dev , vol.21 , pp. 140-146
    • Fisher, C.L.1    Fisher, A.G.2
  • 18
    • 84884829249 scopus 로고    scopus 로고
    • Mapping human epigenomes
    • C.M. Rivera, and B. Ren Mapping human epigenomes Cell 155 2013 39 55
    • (2013) Cell , vol.155 , pp. 39-55
    • Rivera, C.M.1    Ren, B.2
  • 19
    • 0019826665 scopus 로고
    • Establishment in culture of pluripotential cells from mouse embryos
    • M.J. Evans, and M.H. Kaufman Establishment in culture of pluripotential cells from mouse embryos Nature 292 1981 154 156
    • (1981) Nature , vol.292 , pp. 154-156
    • Evans, M.J.1    Kaufman, M.H.2
  • 20
    • 84871016448 scopus 로고    scopus 로고
    • Erythropoiesis
    • J. Greer, J. Foerster, G. Rodgers, 12th ed. Wolters Kluwer/Lippincott Williams & Wilkins Philadelphia, PA
    • E. Dessypris, and S. Sawyer Erythropoiesis J. Greer, J. Foerster, G. Rodgers, Wintrobe's clinical hematology 12th ed. 2009 Wolters Kluwer/Lippincott Williams & Wilkins Philadelphia, PA 106 125
    • (2009) Wintrobe's Clinical Hematology , pp. 106-125
    • Dessypris, E.1    Sawyer, S.2
  • 21
    • 31844443544 scopus 로고    scopus 로고
    • Neutrophilic leukocytes
    • J. Greer, J. Foerster, G. Rodgers, 12th ed. Wolters Kluwer/Lippincott Williams & Wilkins Philadelphia, PA
    • K. Skubitz Neutrophilic leukocytes J. Greer, J. Foerster, G. Rodgers, Wintrobe's clinical hematology 12th ed. 2009 Wolters Kluwer/Lippincott Williams & Wilkins Philadelphia, PA 170 213
    • (2009) Wintrobe's Clinical Hematology , pp. 170-213
    • Skubitz, K.1
  • 23
    • 42649094468 scopus 로고    scopus 로고
    • Global transcription in pluripotent embryonic stem cells
    • S. Efroni, R. Duttagupta, and J. Cheng Global transcription in pluripotent embryonic stem cells Cell Stem Cell 2 2008 437 447
    • (2008) Cell Stem Cell , vol.2 , pp. 437-447
    • Efroni, S.1    Duttagupta, R.2    Cheng, J.3
  • 26
    • 79955786586 scopus 로고    scopus 로고
    • Proteomic analyses reveal common promiscuous patterns of cell surface proteins on human embryonic stem cells and sperms
    • B. Gu, J. Zhang, and Y. Wu Proteomic analyses reveal common promiscuous patterns of cell surface proteins on human embryonic stem cells and sperms PLoS One 6 2011 e19386
    • (2011) PLoS One , vol.6 , pp. 19386
    • Gu, B.1    Zhang, J.2    Wu, Y.3
  • 27
    • 0037438387 scopus 로고    scopus 로고
    • Transcriptional accessibility for genes of multiple tissues and hematopoietic lineages is hierarchically controlled during early hematopoiesis
    • K. Akashi, X. He, and J. Chen Transcriptional accessibility for genes of multiple tissues and hematopoietic lineages is hierarchically controlled during early hematopoiesis Blood 101 2003 383 390
    • (2003) Blood , vol.101 , pp. 383-390
    • Akashi, K.1    He, X.2    Chen, J.3
  • 28
    • 0037071412 scopus 로고    scopus 로고
    • Regulation of hematopoietic stem cell fate
    • D.S. Krause Regulation of hematopoietic stem cell fate Oncogene 21 2002 3262 3269
    • (2002) Oncogene , vol.21 , pp. 3262-3269
    • Krause, D.S.1
  • 29
    • 34447098370 scopus 로고    scopus 로고
    • A chromatin landmark and transcription initiation at most promoters in human cells
    • M.G. Guenther, S.S. Levine, L.A. Boyer, R. Jaenisch, and R.A. Young A chromatin landmark and transcription initiation at most promoters in human cells Cell 130 2007 77 88
    • (2007) Cell , vol.130 , pp. 77-88
    • Guenther, M.G.1    Levine, S.S.2    Boyer, L.A.3    Jaenisch, R.4    Young, R.A.5
  • 30
    • 79954562232 scopus 로고    scopus 로고
    • Regulating RNA polymerase pausing and transcription elongation in embryonic stem cells
    • I.M. Min, J.J. Waterfall, L.J. Core, R.J. Munroe, J. Schimenti, and J.T. Lis Regulating RNA polymerase pausing and transcription elongation in embryonic stem cells Genes Dev 25 2011 742 754
    • (2011) Genes Dev , vol.25 , pp. 742-754
    • Min, I.M.1    Waterfall, J.J.2    Core, L.J.3    Munroe, R.J.4    Schimenti, J.5    Lis, J.T.6
  • 31
    • 67650725820 scopus 로고    scopus 로고
    • The biology of chromatin remodeling complexes
    • C.R. Clapier, and B.R. Cairns The biology of chromatin remodeling complexes Annu Rev Biochem 78 2009 273 304
    • (2009) Annu Rev Biochem , vol.78 , pp. 273-304
    • Clapier, C.R.1    Cairns, B.R.2
  • 32
    • 75749101495 scopus 로고    scopus 로고
    • Chromatin remodelling during development
    • L. Ho, and G.R. Crabtree Chromatin remodelling during development Nature 463 2010 474 484
    • (2010) Nature , vol.463 , pp. 474-484
    • Ho, L.1    Crabtree, G.R.2
  • 33
    • 68949164755 scopus 로고    scopus 로고
    • Chd1 regulates open chromatin and pluripotency of embryonic stem cells
    • A. Gaspar-Maia, A. Alajem, and F. Polesso Chd1 regulates open chromatin and pluripotency of embryonic stem cells Nature 460 2009 863 868
    • (2009) Nature , vol.460 , pp. 863-868
    • Gaspar-Maia, A.1    Alajem, A.2    Polesso, F.3
  • 34
    • 65249173999 scopus 로고    scopus 로고
    • An embryonic stem cell chromatin remodeling complex, esBAF, is an essential component of the core pluripotency transcriptional network
    • L. Ho, R. Jothi, J.L. Ronan, K. Cui, K. Zhao, and G.R. Crabtree An embryonic stem cell chromatin remodeling complex, esBAF, is an essential component of the core pluripotency transcriptional network Proc Natl Acad Sci U S A 106 2009 5187 5191
    • (2009) Proc Natl Acad Sci U S A , vol.106 , pp. 5187-5191
    • Ho, L.1    Jothi, R.2    Ronan, J.L.3    Cui, K.4    Zhao, K.5    Crabtree, G.R.6
  • 35
    • 65249180173 scopus 로고    scopus 로고
    • An embryonic stem cell chromatin remodeling complex, esBAF, is essential for embryonic stem cell self-renewal and pluripotency
    • L. Ho, J.L. Ronan, and J. Wu An embryonic stem cell chromatin remodeling complex, esBAF, is essential for embryonic stem cell self-renewal and pluripotency Proc Natl Acad Sci U S A 106 2009 5181 5186
    • (2009) Proc Natl Acad Sci U S A , vol.106 , pp. 5181-5186
    • Ho, L.1    Ronan, J.L.2    Wu, J.3
  • 36
    • 73349095689 scopus 로고    scopus 로고
    • Smarcc1/BAF155 couples self-renewal gene repression with changes in chromatin structure in mouse embryonic stem cells
    • C. Schaniel, Y.S. Ang, and K. Ratnakumar Smarcc1/BAF155 couples self-renewal gene repression with changes in chromatin structure in mouse embryonic stem cells Stem Cells 27 2009 2979 2991
    • (2009) Stem Cells , vol.27 , pp. 2979-2991
    • Schaniel, C.1    Ang, Y.S.2    Ratnakumar, K.3
  • 37
    • 1042302747 scopus 로고    scopus 로고
    • Histone deacetylase activity is required for embryonic stem cell differentiation
    • J.H. Lee, S.R. Hart, and D.G. Skalnik Histone deacetylase activity is required for embryonic stem cell differentiation Genesis 38 2004 32 38
    • (2004) Genesis , vol.38 , pp. 32-38
    • Lee, J.H.1    Hart, S.R.2    Skalnik, D.G.3
  • 38
    • 59149083658 scopus 로고    scopus 로고
    • Large histone H3 lysine 9 dimethylated chromatin blocks distinguish differentiated from embryonic stem cells
    • B. Wen, H. Wu, Y. Shinkai, R.A. Irizarry, and A.P. Feinberg Large histone H3 lysine 9 dimethylated chromatin blocks distinguish differentiated from embryonic stem cells Nat Genet 41 2009 246 250
    • (2009) Nat Genet , vol.41 , pp. 246-250
    • Wen, B.1    Wu, H.2    Shinkai, Y.3    Irizarry, R.A.4    Feinberg, A.P.5
  • 39
    • 84885393469 scopus 로고    scopus 로고
    • Transcriptional regulation by polycomb group proteins
    • L. Di Croce, and K. Helin Transcriptional regulation by polycomb group proteins Nat Struct Mol Biol 20 2013 1147 1155
    • (2013) Nat Struct Mol Biol , vol.20 , pp. 1147-1155
    • Di Croce, L.1    Helin, K.2
  • 40
    • 84876871047 scopus 로고    scopus 로고
    • Occupying chromatin: Polycomb mechanisms for getting to genomic targets, stopping transcriptional traffic, and staying put
    • J.A. Simon, and R.E. Kingston Occupying chromatin: polycomb mechanisms for getting to genomic targets, stopping transcriptional traffic, and staying put Mol Cell 49 2013 808 824
    • (2013) Mol Cell , vol.49 , pp. 808-824
    • Simon, J.A.1    Kingston, R.E.2
  • 41
    • 77956202054 scopus 로고    scopus 로고
    • Polycomb group proteins set the stage for early lineage commitment
    • L.E. Surface, S.R. Thornton, and L.A. Boyer Polycomb group proteins set the stage for early lineage commitment Cell Stem Cell 7 2010 288 298
    • (2010) Cell Stem Cell , vol.7 , pp. 288-298
    • Surface, L.E.1    Thornton, S.R.2    Boyer, L.A.3
  • 42
    • 78751662908 scopus 로고    scopus 로고
    • The polycomb complex PRC2 and its mark in life
    • R. Margueron, and D. Reinberg The polycomb complex PRC2 and its mark in life Nature 469 2011 343 349
    • (2011) Nature , vol.469 , pp. 343-349
    • Margueron, R.1    Reinberg, D.2
  • 43
    • 33646882068 scopus 로고    scopus 로고
    • Polycomb complexes repress developmental regulators in murine embryonic stem cells
    • L.A. Boyer, K. Plath, and J. Zeitlinger Polycomb complexes repress developmental regulators in murine embryonic stem cells Nature 441 2006 349 353
    • (2006) Nature , vol.441 , pp. 349-353
    • Boyer, L.A.1    Plath, K.2    Zeitlinger, J.3
  • 44
    • 33646865180 scopus 로고    scopus 로고
    • Control of developmental regulators by polycomb in human embryonic stem cells
    • T.I. Lee, R.G. Jenner, and L.A. Boyer Control of developmental regulators by polycomb in human embryonic stem cells Cell 125 2006 301 313
    • (2006) Cell , vol.125 , pp. 301-313
    • Lee, T.I.1    Jenner, R.G.2    Boyer, L.A.3
  • 45
    • 48649091905 scopus 로고    scopus 로고
    • Polycomb repressive complex 2 is dispensable for maintenance of embryonic stem cell pluripotency
    • S.J. Chamberlain, D. Yee, and T. Magnuson Polycomb repressive complex 2 is dispensable for maintenance of embryonic stem cell pluripotency Stem Cells 26 2008 1496 1505
    • (2008) Stem Cells , vol.26 , pp. 1496-1505
    • Chamberlain, S.J.1    Yee, D.2    Magnuson, T.3
  • 46
    • 34248169728 scopus 로고    scopus 로고
    • The polycomb group protein Suz12 is required for embryonic stem cell differentiation
    • D. Pasini, A.P. Bracken, J.B. Hansen, M. Capillo, and K. Helin The polycomb group protein Suz12 is required for embryonic stem cell differentiation Mol Cell Biol 27 2007 3769 3779
    • (2007) Mol Cell Biol , vol.27 , pp. 3769-3779
    • Pasini, D.1    Bracken, A.P.2    Hansen, J.B.3    Capillo, M.4    Helin, K.5
  • 47
    • 55949124844 scopus 로고    scopus 로고
    • Ezh1 mediates methylation on histone H3 lysine 27 and complements Ezh2 in maintaining stem cell identity and executing pluripotency
    • X. Shen, Y. Liu, and Y.J. Hsu Ezh1 mediates methylation on histone H3 lysine 27 and complements Ezh2 in maintaining stem cell identity and executing pluripotency Mol Cell 32 2008 491 502
    • (2008) Mol Cell , vol.32 , pp. 491-502
    • Shen, X.1    Liu, Y.2    Hsu, Y.J.3
  • 48
    • 33646070846 scopus 로고    scopus 로고
    • A bivalent chromatin structure marks key developmental genes in embryonic stem cells
    • B.E. Bernstein, T.S. Mikkelsen, and X. Xie A bivalent chromatin structure marks key developmental genes in embryonic stem cells Cell 125 2006 315 326
    • (2006) Cell , vol.125 , pp. 315-326
    • Bernstein, B.E.1    Mikkelsen, T.S.2    Xie, X.3
  • 49
    • 84879260661 scopus 로고    scopus 로고
    • A double take on bivalent promoters
    • P. Voigt, W.W. Tee, and D. Reinberg A double take on bivalent promoters Genes Dev 27 2013 1318 1338
    • (2013) Genes Dev , vol.27 , pp. 1318-1338
    • Voigt, P.1    Tee, W.W.2    Reinberg, D.3
  • 50
    • 34548424709 scopus 로고    scopus 로고
    • Whole-genome mapping of histone H3 lys4 and 27 trimethylations reveals distinct genomic compartments in human embryonic stem cells
    • X.D. Zhao, X. Han, and J.L. Chew Whole-genome mapping of histone H3 lys4 and 27 trimethylations reveals distinct genomic compartments in human embryonic stem cells Cell Stem Cell 1 2007 286 298
    • (2007) Cell Stem Cell , vol.1 , pp. 286-298
    • Zhao, X.D.1    Han, X.2    Chew, J.L.3
  • 51
    • 34548434716 scopus 로고    scopus 로고
    • Whole-genome analysis of histone H3 lysine 4 and lysine 27 methylation in human embryonic stem cells
    • G. Pan, S. Tian, and J. Nie Whole-genome analysis of histone H3 lysine 4 and lysine 27 methylation in human embryonic stem cells Cell Stem Cell 1 2007 299 312
    • (2007) Cell Stem Cell , vol.1 , pp. 299-312
    • Pan, G.1    Tian, S.2    Nie, J.3
  • 52
    • 34548446754 scopus 로고    scopus 로고
    • Human ES cell profiling broadens the reach of bivalent domains
    • A.A. Sharov, and M.S.H. Ko Human ES cell profiling broadens the reach of bivalent domains Cell Stem Cell 1 2007 237 238
    • (2007) Cell Stem Cell , vol.1 , pp. 237-238
    • Sharov, A.A.1    Ko, M.S.H.2
  • 53
    • 84874194072 scopus 로고    scopus 로고
    • DNA methylation: Roles in mammalian development
    • Z.D. Smith, and A. Meissner DNA methylation: roles in mammalian development Nat Rev Genet 14 2013 204 220
    • (2013) Nat Rev Genet , vol.14 , pp. 204-220
    • Smith, Z.D.1    Meissner, A.2
  • 54
    • 84875129831 scopus 로고    scopus 로고
    • DNA methylation dynamics in health and disease
    • Y. Bergman, and H. Cedar DNA methylation dynamics in health and disease Nat Struct Mol Biol 20 2013 274 281
    • (2013) Nat Struct Mol Biol , vol.20 , pp. 274-281
    • Bergman, Y.1    Cedar, H.2
  • 55
    • 49649125042 scopus 로고    scopus 로고
    • Genome-scale DNA methylation maps of pluripotent and differentiated cells
    • A. Meissner, T.S. Mikkelsen, and H. Gu Genome-scale DNA methylation maps of pluripotent and differentiated cells Nature 454 2008 766 770
    • (2008) Nature , vol.454 , pp. 766-770
    • Meissner, A.1    Mikkelsen, T.S.2    Gu, H.3
  • 56
    • 70450217879 scopus 로고    scopus 로고
    • Human DNA methylomes at base resolution show widespread epigenomic differences
    • R. Lister, M. Pelizzola, and R.H. Dowen Human DNA methylomes at base resolution show widespread epigenomic differences Nature 462 2009 315 322
    • (2009) Nature , vol.462 , pp. 315-322
    • Lister, R.1    Pelizzola, M.2    Dowen, R.H.3
  • 57
    • 77649267695 scopus 로고    scopus 로고
    • Dynamic changes in the human methylome during differentiation
    • L. Laurent, E. Wong, and G. Li Dynamic changes in the human methylome during differentiation Genome Res 20 2010 320 331
    • (2010) Genome Res , vol.20 , pp. 320-331
    • Laurent, L.1    Wong, E.2    Li, G.3
  • 58
    • 0026708177 scopus 로고
    • Targeted mutation of the DNA methyltransferase gene results in embryonic lethality
    • E. Li, T.H. Bestor, and R. Jaenisch Targeted mutation of the DNA methyltransferase gene results in embryonic lethality Cell 69 1992 915 926
    • (1992) Cell , vol.69 , pp. 915-926
    • Li, E.1    Bestor, T.H.2    Jaenisch, R.3
  • 59
    • 0033615717 scopus 로고    scopus 로고
    • DNA methyltransferases Dnmt3a and Dnmt3b are essential for de novo methylation and mammalian development
    • M. Okano, D.W. Bell, D.A. Haber, and W. Li DNA methyltransferases Dnmt3a and Dnmt3b are essential for de novo methylation and mammalian development Cell 99 1999 247 257
    • (1999) Cell , vol.99 , pp. 247-257
    • Okano, M.1    Bell, D.W.2    Haber, D.A.3    Li, W.4
  • 60
    • 4744372577 scopus 로고    scopus 로고
    • Severe global DNA hypomethylation blocks differentiation and induces histone hyperacetylation in embryonic stem cells
    • M. Jackson, A. Krassowska, and N. Gilbert Severe global DNA hypomethylation blocks differentiation and induces histone hyperacetylation in embryonic stem cells Mol Cell Biol 24 2004 8862 8871
    • (2004) Mol Cell Biol , vol.24 , pp. 8862-8871
    • Jackson, M.1    Krassowska, A.2    Gilbert, N.3
  • 61
    • 84878260646 scopus 로고    scopus 로고
    • TETonic shift: Biological roles of TET proteins in DNA demethylation and transcription
    • W.A. Pastor, L. Aravind, and A. Rao TETonic shift: biological roles of TET proteins in DNA demethylation and transcription Nat Rev Mol Cell Biol 14 2013 341 356
    • (2013) Nat Rev Mol Cell Biol , vol.14 , pp. 341-356
    • Pastor, W.A.1    Aravind, L.2    Rao, A.3
  • 62
    • 84860749868 scopus 로고    scopus 로고
    • Tet family proteins and 5-hydroxymethylcytosine in development and disease
    • L. Tan, and Y.G. Shi Tet family proteins and 5-hydroxymethylcytosine in development and disease Development 139 2012 1895 1902
    • (2012) Development , vol.139 , pp. 1895-1902
    • Tan, L.1    Shi, Y.G.2
  • 63
    • 84877930005 scopus 로고    scopus 로고
    • DNA methylation and methylcytosine oxidation in cell fate decisions
    • K.P. Koh, and A. Rao DNA methylation and methylcytosine oxidation in cell fate decisions Curr Opin Cell Biol 25 2013 152 161
    • (2013) Curr Opin Cell Biol , vol.25 , pp. 152-161
    • Koh, K.P.1    Rao, A.2
  • 64
    • 79551587102 scopus 로고    scopus 로고
    • Tet1 and Tet2 regulate 5-hydroxymethylcytosine production and cell lineage specification in mouse embryonic stem cells
    • K.P. Koh, A. Yabuuchi, and S. Rao Tet1 and Tet2 regulate 5-hydroxymethylcytosine production and cell lineage specification in mouse embryonic stem cells Cell Stem Cell 8 2011 200 213
    • (2011) Cell Stem Cell , vol.8 , pp. 200-213
    • Koh, K.P.1    Yabuuchi, A.2    Rao, S.3
  • 65
    • 66149146320 scopus 로고    scopus 로고
    • Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by Mll partner Tet1
    • M. Tahiliani, K.P. Koh, and Y. Shen Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by Mll partner Tet1 Science 324 2009 930 935
    • (2009) Science , vol.324 , pp. 930-935
    • Tahiliani, M.1    Koh, K.P.2    Shen, Y.3
  • 66
    • 84873707539 scopus 로고    scopus 로고
    • Combined deficiency of Tet1 and Tet2 causes epigenetic abnormalities but is compatible with postnatal development
    • M.M. Dawlaty, A. Breiling, and T. Le Combined deficiency of Tet1 and Tet2 causes epigenetic abnormalities but is compatible with postnatal development Dev Cell 24 2013 310 323
    • (2013) Dev Cell , vol.24 , pp. 310-323
    • Dawlaty, M.M.1    Breiling, A.2    Le, T.3
  • 67
    • 79961125686 scopus 로고    scopus 로고
    • Tet1 and 5-hydroxymethylation: A genome-wide view in mouse embryonic stem cells
    • H. Wu, and Y. Zhang Tet1 and 5-hydroxymethylation: a genome-wide view in mouse embryonic stem cells Cell Cycle 10 2011 2428 2436
    • (2011) Cell Cycle , vol.10 , pp. 2428-2436
    • Wu, H.1    Zhang, Y.2
  • 68
    • 79961139741 scopus 로고    scopus 로고
    • Tet1 is dispensable for maintaining pluripotency and its loss is compatible with embryonic and postnatal development
    • M.M. Dawlaty, K. Ganz, and B.E. Powell Tet1 is dispensable for maintaining pluripotency and its loss is compatible with embryonic and postnatal development Cell Stem Cell 9 2011 166 175
    • (2011) Cell Stem Cell , vol.9 , pp. 166-175
    • Dawlaty, M.M.1    Ganz, K.2    Powell, B.E.3
  • 69
    • 84884988122 scopus 로고    scopus 로고
    • MicroRNA control of mouse and human pluripotent stem cell behavior
    • T.S. Greve, R.L. Judson, and R. Blelloch MicroRNA control of mouse and human pluripotent stem cell behavior Annu Rev Cell Dev Biol 29 2013 213 239
    • (2013) Annu Rev Cell Dev Biol , vol.29 , pp. 213-239
    • Greve, T.S.1    Judson, R.L.2    Blelloch, R.3
  • 70
    • 40949130398 scopus 로고    scopus 로고
    • MicroRNAs control de novo DNA methylation through regulation of transcriptional repressors in mouse embryonic stem cells
    • L. Sinkkonen, T. Hugenschmidt, and P. Berninger MicroRNAs control de novo DNA methylation through regulation of transcriptional repressors in mouse embryonic stem cells Nat Struct Mol Biol 15 2008 259 267
    • (2008) Nat Struct Mol Biol , vol.15 , pp. 259-267
    • Sinkkonen, L.1    Hugenschmidt, T.2    Berninger, P.3
  • 71
    • 84872038076 scopus 로고    scopus 로고
    • MicroRNA-29b is a novel mediator of Sox2 function in the regulation of somatic cell reprogramming
    • X. Guo, Q. Liu, and G. Wang MicroRNA-29b is a novel mediator of Sox2 function in the regulation of somatic cell reprogramming Cell Res 23 2013 142 156
    • (2013) Cell Res , vol.23 , pp. 142-156
    • Guo, X.1    Liu, Q.2    Wang, G.3
  • 72
    • 84862908896 scopus 로고    scopus 로고
    • MicroRNA regulation of Cbx7 mediates a switch of polycomb orthologs during ESC differentiation
    • A. O'Loghlen, A.M. Munoz-Cabello, and A. Gaspar-Maia MicroRNA regulation of Cbx7 mediates a switch of polycomb orthologs during ESC differentiation Cell Stem Cell 10 2012 33 46
    • (2012) Cell Stem Cell , vol.10 , pp. 33-46
    • O'Loghlen, A.1    Munoz-Cabello, A.M.2    Gaspar-Maia, A.3
  • 73
    • 84855516244 scopus 로고    scopus 로고
    • Nonoverlapping functions of the polycomb group Cbx family of proteins in embryonic stem cells
    • L. Morey, G. Pascual, and L. Cozzuto Nonoverlapping functions of the polycomb group Cbx family of proteins in embryonic stem cells Cell Stem Cell 10 2012 47 62
    • (2012) Cell Stem Cell , vol.10 , pp. 47-62
    • Morey, L.1    Pascual, G.2    Cozzuto, L.3
  • 74
    • 84861904178 scopus 로고    scopus 로고
    • Genome regulation by long noncoding RNAs
    • J.L. Rinn, and H.Y. Chang Genome regulation by long noncoding RNAs Annu Rev Biochem 81 2012 145 166
    • (2012) Annu Rev Biochem , vol.81 , pp. 145-166
    • Rinn, J.L.1    Chang, H.Y.2
  • 75
    • 84875200257 scopus 로고    scopus 로고
    • Long noncoding RNAs: Cellular address codes in development and disease
    • P.J. Batista, and H.Y. Chang Long noncoding RNAs: cellular address codes in development and disease Cell 152 2013 1298 1307
    • (2013) Cell , vol.152 , pp. 1298-1307
    • Batista, P.J.1    Chang, H.Y.2
  • 76
    • 80052869283 scopus 로고    scopus 로고
    • LincRNAs act in the circuitry controlling pluripotency and differentiation
    • M. Guttman, J. Donaghey, and B.W. Carey LincRNAs act in the circuitry controlling pluripotency and differentiation Nature 477 2011 295 300
    • (2011) Nature , vol.477 , pp. 295-300
    • Guttman, M.1    Donaghey, J.2    Carey, B.W.3
  • 77
    • 84856492490 scopus 로고    scopus 로고
    • Human long non-coding RNAs promote pluripotency and neuronal differentiation by association with chromatin modifiers and transcription factors
    • S.Y. Ng, R. Johnson, and L.W. Stanton Human long non-coding RNAs promote pluripotency and neuronal differentiation by association with chromatin modifiers and transcription factors EMBO J 31 2012 522 533
    • (2012) EMBO J , vol.31 , pp. 522-533
    • Ng, S.Y.1    Johnson, R.2    Stanton, L.W.3
  • 78
    • 84873033283 scopus 로고    scopus 로고
    • Photobleaching assays (FRAP & FLIP) to measure chromatin protein dynamics in living embryonic stem cells
    • M. Nissim-Rafinia, and E. Meshorer Photobleaching assays (FRAP & FLIP) to measure chromatin protein dynamics in living embryonic stem cells J Vis Exp 2011
    • (2011) J Vis Exp
    • Nissim-Rafinia, M.1    Meshorer, E.2
  • 79
    • 84863334769 scopus 로고    scopus 로고
    • Histone modifications and lamin a regulate chromatin protein dynamics in early embryonic stem cell differentiation
    • S. Melcer, H. Hezroni, and E. Rand Histone modifications and lamin a regulate chromatin protein dynamics in early embryonic stem cell differentiation Nat Commun 3 2012 910
    • (2012) Nat Commun , vol.3 , pp. 910
    • Melcer, S.1    Hezroni, H.2    Rand, E.3
  • 81
    • 84865755978 scopus 로고    scopus 로고
    • The accessible chromatin landscape of the human genome
    • R.E. Thurman, E. Rynes, and R. Humbert The accessible chromatin landscape of the human genome Nature 489 2012 75 82
    • (2012) Nature , vol.489 , pp. 75-82
    • Thurman, R.E.1    Rynes, E.2    Humbert, R.3
  • 82
    • 80053539409 scopus 로고    scopus 로고
    • Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity
    • L. Song, Z. Zhang, and L.L. Grasfeder Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity Genome Res 21 2011 1757 1767
    • (2011) Genome Res , vol.21 , pp. 1757-1767
    • Song, L.1    Zhang, Z.2    Grasfeder, L.L.3
  • 83
    • 84875196326 scopus 로고    scopus 로고
    • Determinants of nucleosome positioning
    • K. Struhl, and E. Segal Determinants of nucleosome positioning Nat Struct Mol Biol 20 2013 267 273
    • (2013) Nat Struct Mol Biol , vol.20 , pp. 267-273
    • Struhl, K.1    Segal, E.2
  • 84
    • 84869089058 scopus 로고    scopus 로고
    • Genome-wide nucleosome positioning during embryonic stem cell development
    • V.B. Teif, Y. Vainshtein, and M. Caudron-Herger Genome-wide nucleosome positioning during embryonic stem cell development Nat Struct Mol Biol 19 2012 1185 1192
    • (2012) Nat Struct Mol Biol , vol.19 , pp. 1185-1192
    • Teif, V.B.1    Vainshtein, Y.2    Caudron-Herger, M.3
  • 85
    • 84855297335 scopus 로고    scopus 로고
    • A decade of 3C technologies: Insights into nuclear organization
    • E. de Wit, and W. de Laat A decade of 3C technologies: insights into nuclear organization Genes Dev 26 2012 11 24
    • (2012) Genes Dev , vol.26 , pp. 11-24
    • De Wit, E.1    De Laat, W.2
  • 86
    • 77957139539 scopus 로고    scopus 로고
    • Mediator and cohesin connect gene expression and chromatin architecture
    • M.H. Kagey, J.J. Newman, and S. Bilodeau Mediator and cohesin connect gene expression and chromatin architecture Nature 467 2010 430 435
    • (2010) Nature , vol.467 , pp. 430-435
    • Kagey, M.H.1    Newman, J.J.2    Bilodeau, S.3
  • 87
    • 84893155560 scopus 로고    scopus 로고
    • Intrachromosomal looping is required for activation of endogenous pluripotency genes during reprogramming
    • H. Zhang, W. Jiao, and L. Sun Intrachromosomal looping is required for activation of endogenous pluripotency genes during reprogramming Cell Stem Cell 13 2013 30 35
    • (2013) Cell Stem Cell , vol.13 , pp. 30-35
    • Zhang, H.1    Jiao, W.2    Sun, L.3
  • 88
    • 84887835943 scopus 로고    scopus 로고
    • Klf4 organizes long-range chromosomal interactions with the oct4 locus in reprogramming and pluripotency
    • Z. Wei, F. Gao, and S. Kim Klf4 organizes long-range chromosomal interactions with the oct4 locus in reprogramming and pluripotency Cell Stem Cell 13 2013 36 47
    • (2013) Cell Stem Cell , vol.13 , pp. 36-47
    • Wei, Z.1    Gao, F.2    Kim, S.3
  • 89
    • 84884134904 scopus 로고    scopus 로고
    • The pluripotent genome in three dimensions is shaped around pluripotency factors
    • E. de Wit, B.A. Bouwman, and Y. Zhu The pluripotent genome in three dimensions is shaped around pluripotency factors Nature 501 2013 227 231
    • (2013) Nature , vol.501 , pp. 227-231
    • De Wit, E.1    Bouwman, B.A.2    Zhu, Y.3
  • 90
    • 84887852466 scopus 로고    scopus 로고
    • Genome-wide chromatin interactions of the Nanog locus in pluripotency, differentiation, and reprogramming
    • E. Apostolou, F. Ferrari, and R.M. Walsh Genome-wide chromatin interactions of the Nanog locus in pluripotency, differentiation, and reprogramming Cell Stem Cell 12 2013 699 712
    • (2013) Cell Stem Cell , vol.12 , pp. 699-712
    • Apostolou, E.1    Ferrari, F.2    Walsh, R.M.3
  • 91
    • 84861095603 scopus 로고    scopus 로고
    • Topological domains in mammalian genomes identified by analysis of chromatin interactions
    • J.R. Dixon, S. Selvaraj, and F. Yue Topological domains in mammalian genomes identified by analysis of chromatin interactions Nature 485 2012 376 380
    • (2012) Nature , vol.485 , pp. 376-380
    • Dixon, J.R.1    Selvaraj, S.2    Yue, F.3
  • 92
    • 84878860751 scopus 로고    scopus 로고
    • Architectural protein subclasses shape 3D organization of genomes during lineage commitment
    • J.E. Phillips-Cremins, M.E. Sauria, and A. Sanyal Architectural protein subclasses shape 3D organization of genomes during lineage commitment Cell 153 2013 1281 1295
    • (2013) Cell , vol.153 , pp. 1281-1295
    • Phillips-Cremins, J.E.1    Sauria, M.E.2    Sanyal, A.3
  • 93
    • 79959699992 scopus 로고    scopus 로고
    • CTCF-mediated functional chromatin interactome in pluripotent cells
    • L. Handoko, H. Xu, and G. Li CTCF-mediated functional chromatin interactome in pluripotent cells Nat Genet 43 2011 630 638
    • (2011) Nat Genet , vol.43 , pp. 630-638
    • Handoko, L.1    Xu, H.2    Li, G.3
  • 94
    • 84875127327 scopus 로고    scopus 로고
    • CTCF and cohesin: Linking gene regulatory elements with their targets
    • M. Merkenschlager, and D.T. Odom CTCF and cohesin: linking gene regulatory elements with their targets Cell 152 2013 1285 1297
    • (2013) Cell , vol.152 , pp. 1285-1297
    • Merkenschlager, M.1    Odom, D.T.2
  • 95
    • 77952576224 scopus 로고    scopus 로고
    • Molecular maps of the reorganization of genome-nuclear lamina interactions during differentiation
    • D. Peric-Hupkes, W. Meuleman, and L. Pagie Molecular maps of the reorganization of genome-nuclear lamina interactions during differentiation Mol Cell 38 2010 603 613
    • (2010) Mol Cell , vol.38 , pp. 603-613
    • Peric-Hupkes, D.1    Meuleman, W.2    Pagie, L.3
  • 96
    • 79952660821 scopus 로고    scopus 로고
    • Control of the embryonic stem cell state
    • R.A. Young Control of the embryonic stem cell state Cell 144 2011 940 954
    • (2011) Cell , vol.144 , pp. 940-954
    • Young, R.A.1
  • 97
    • 39149130361 scopus 로고    scopus 로고
    • Stem cells, the molecular circuitry of pluripotency and nuclear reprogramming
    • R. Jaenisch, and R. Young Stem cells, the molecular circuitry of pluripotency and nuclear reprogramming Cell 132 2008 567 582
    • (2008) Cell , vol.132 , pp. 567-582
    • Jaenisch, R.1    Young, R.2
  • 98
    • 79953847687 scopus 로고    scopus 로고
    • A precarious balance: Pluripotency factors as lineage specifiers
    • K.M. Loh, and B. Lim A precarious balance: pluripotency factors as lineage specifiers Cell Stem Cell 8 2011 363 369
    • (2011) Cell Stem Cell , vol.8 , pp. 363-369
    • Loh, K.M.1    Lim, B.2
  • 99
    • 84884144405 scopus 로고    scopus 로고
    • And then there were none: No need for pluripotency factors to induce reprogramming
    • B.K. Chou, and L. Cheng And then there were none: no need for pluripotency factors to induce reprogramming Cell Stem Cell 13 2013 261 262
    • (2013) Cell Stem Cell , vol.13 , pp. 261-262
    • Chou, B.K.1    Cheng, L.2
  • 100
    • 79958263080 scopus 로고    scopus 로고
    • Pluripotency factors in embryonic stem cells regulate differentiation into germ layers
    • M. Thomson, S.J. Liu, L.N. Zou, Z. Smith, A. Meissner, and S. Ramanathan Pluripotency factors in embryonic stem cells regulate differentiation into germ layers Cell 145 2011 875 889
    • (2011) Cell , vol.145 , pp. 875-889
    • Thomson, M.1    Liu, S.J.2    Zou, L.N.3    Smith, Z.4    Meissner, A.5    Ramanathan, S.6
  • 101
    • 84859539293 scopus 로고    scopus 로고
    • Distinct lineage specification roles for Nanog, Oct4, and Sox2 in human embryonic stem cells
    • Z. Wang, E. Oron, B. Nelson, S. Razis, and N. Ivanova Distinct lineage specification roles for Nanog, Oct4, and Sox2 in human embryonic stem cells Cell Stem Cell 10 2012 440 454
    • (2012) Cell Stem Cell , vol.10 , pp. 440-454
    • Wang, Z.1    Oron, E.2    Nelson, B.3    Razis, S.4    Ivanova, N.5
  • 102
    • 84878273239 scopus 로고    scopus 로고
    • Induction of pluripotency in mouse somatic cells with lineage specifiers
    • J. Shu, C. Wu, and Y. Wu Induction of pluripotency in mouse somatic cells with lineage specifiers Cell 153 2013 963 975
    • (2013) Cell , vol.153 , pp. 963-975
    • Shu, J.1    Wu, C.2    Wu, Y.3
  • 103
    • 84884131429 scopus 로고    scopus 로고
    • Reprogramming of human fibroblasts to pluripotency with lineage specifiers
    • N. Montserrat, E. Nivet, and I. Sancho-Martinez Reprogramming of human fibroblasts to pluripotency with lineage specifiers Cell Stem Cell 13 2013 341 350
    • (2013) Cell Stem Cell , vol.13 , pp. 341-350
    • Montserrat, N.1    Nivet, E.2    Sancho-Martinez, I.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.