-
1
-
-
79953881831
-
Highly efficient miRNA-mediated reprogramming of mouse and human somatic cells to pluripotency
-
F. Anokye-Danso, C.M. Trivedi, D. Juhr, M. Gupta, Z. Cui, Y. Tian, Y. Zhang, W. Yang, P.J. Gruber, J.A. Epstein, and E.E. Morrisey Highly efficient miRNA-mediated reprogramming of mouse and human somatic cells to pluripotency Cell Stem Cell 8 2011 376 388
-
(2011)
Cell Stem Cell
, vol.8
, pp. 376-388
-
-
Anokye-Danso, F.1
Trivedi, C.M.2
Juhr, D.3
Gupta, M.4
Cui, Z.5
Tian, Y.6
Zhang, Y.7
Yang, W.8
Gruber, P.J.9
Epstein, J.A.10
Morrisey, E.E.11
-
2
-
-
38049054726
-
Genome-wide mapping and analysis of active promoters in mouse embryonic stem cells and adult organs
-
L.O. Barrera, Z. Li, A.D. Smith, K.C. Arden, W.K. Cavenee, M.Q. Zhang, R.D. Green, and B. Ren Genome-wide mapping and analysis of active promoters in mouse embryonic stem cells and adult organs Genome Res. 18 2008 46 59
-
(2008)
Genome Res.
, vol.18
, pp. 46-59
-
-
Barrera, L.O.1
Li, Z.2
Smith, A.D.3
Arden, K.C.4
Cavenee, W.K.5
Zhang, M.Q.6
Green, R.D.7
Ren, B.8
-
3
-
-
84655162785
-
Regions of focal DNA hypermethylation and long-range hypomethylation in colorectal cancer coincide with nuclear lamina-associated domains
-
B.P. Berman, D.J. Weisenberger, J.F. Aman, T. Hinoue, Z. Ramjan, Y. Liu, H. Noushmehr, C.P. Lange, C.M. van Dijk, and R.A. Tollenaar Regions of focal DNA hypermethylation and long-range hypomethylation in colorectal cancer coincide with nuclear lamina-associated domains Nat. Genet. 44 2012 40 46
-
(2012)
Nat. Genet.
, vol.44
, pp. 40-46
-
-
Berman, B.P.1
Weisenberger, D.J.2
Aman, J.F.3
Hinoue, T.4
Ramjan, Z.5
Liu, Y.6
Noushmehr, H.7
Lange, C.P.8
Van Dijk, C.M.9
Tollenaar, R.A.10
-
4
-
-
79961149681
-
BRACHYURY and CDX2 mediate BMP-induced differentiation of human and mouse pluripotent stem cells into embryonic and extraembryonic lineages
-
A.S. Bernardo, T. Faial, L. Gardner, K.K. Niakan, D. Ortmann, C.E. Senner, E.M. Callery, M.W. Trotter, M. Hemberger, and J.C. Smith BRACHYURY and CDX2 mediate BMP-induced differentiation of human and mouse pluripotent stem cells into embryonic and extraembryonic lineages Cell Stem Cell 9 2011 144 155
-
(2011)
Cell Stem Cell
, vol.9
, pp. 144-155
-
-
Bernardo, A.S.1
Faial, T.2
Gardner, L.3
Niakan, K.K.4
Ortmann, D.5
Senner, C.E.6
Callery, E.M.7
Trotter, M.W.8
Hemberger, M.9
Smith, J.C.10
-
5
-
-
33646070846
-
A bivalent chromatin structure marks key developmental genes in embryonic stem cells
-
B.E. Bernstein, T.S. Mikkelsen, X. Xie, M. Kamal, D.J. Huebert, J. Cuff, B. Fry, A. Meissner, M. Wernig, and K. Plath A bivalent chromatin structure marks key developmental genes in embryonic stem cells Cell 125 2006 315 326
-
(2006)
Cell
, vol.125
, pp. 315-326
-
-
Bernstein, B.E.1
Mikkelsen, T.S.2
Xie, X.3
Kamal, M.4
Huebert, D.J.5
Cuff, J.6
Fry, B.7
Meissner, A.8
Wernig, M.9
Plath, K.10
-
6
-
-
0036144048
-
DNA methylation patterns and epigenetic memory
-
A. Bird DNA methylation patterns and epigenetic memory Genes Dev. 16 2002 6 21
-
(2002)
Genes Dev.
, vol.16
, pp. 6-21
-
-
Bird, A.1
-
7
-
-
84865369147
-
DNA methylation dynamics during in vivo differentiation of blood and skin stem cells
-
C. Bock, I. Beerman, W.H. Lien, Z.D. Smith, H. Gu, P. Boyle, A. Gnirke, E. Fuchs, D.J. Rossi, and A. Meissner DNA methylation dynamics during in vivo differentiation of blood and skin stem cells Mol. Cell 47 2012 633 647
-
(2012)
Mol. Cell
, vol.47
, pp. 633-647
-
-
Bock, C.1
Beerman, I.2
Lien, W.H.3
Smith, Z.D.4
Gu, H.5
Boyle, P.6
Gnirke, A.7
Fuchs, E.8
Rossi, D.J.9
Meissner, A.10
-
8
-
-
33646882068
-
Polycomb complexes repress developmental regulators in murine embryonic stem cells
-
L.A. Boyer, K. Plath, J. Zeitlinger, T. Brambrink, L.A. Medeiros, T.I. Lee, S.S. Levine, M. Wernig, A. Tajonar, and M.K. Ray Polycomb complexes repress developmental regulators in murine embryonic stem cells Nature 441 2006 349 353
-
(2006)
Nature
, vol.441
, pp. 349-353
-
-
Boyer, L.A.1
Plath, K.2
Zeitlinger, J.3
Brambrink, T.4
Medeiros, L.A.5
Lee, T.I.6
Levine, S.S.7
Wernig, M.8
Tajonar, A.9
Ray, M.K.10
-
9
-
-
70350500219
-
Polycomb group proteins: Navigators of lineage pathways led astray in cancer
-
A.P. Bracken, and K. Helin Polycomb group proteins: navigators of lineage pathways led astray in cancer Nat. Rev. Cancer 9 2009 773 784
-
(2009)
Nat. Rev. Cancer
, vol.9
, pp. 773-784
-
-
Bracken, A.P.1
Helin, K.2
-
10
-
-
67349190247
-
Linking DNA methylation and histone modification: Patterns and paradigms
-
H. Cedar, and Y. Bergman Linking DNA methylation and histone modification: patterns and paradigms Nat. Rev. Genet. 10 2009 295 304
-
(2009)
Nat. Rev. Genet.
, vol.10
, pp. 295-304
-
-
Cedar, H.1
Bergman, Y.2
-
11
-
-
62149125434
-
Highly efficient neural conversion of human ES and iPS cells by dual inhibition of SMAD signaling
-
S.M. Chambers, C.A. Fasano, E.P. Papapetrou, M. Tomishima, M. Sadelain, and L. Studer Highly efficient neural conversion of human ES and iPS cells by dual inhibition of SMAD signaling Nat. Biotechnol. 27 2009 275 280
-
(2009)
Nat. Biotechnol.
, vol.27
, pp. 275-280
-
-
Chambers, S.M.1
Fasano, C.A.2
Papapetrou, E.P.3
Tomishima, M.4
Sadelain, M.5
Studer, L.6
-
12
-
-
79960819723
-
Identification of human housekeeping genes and tissue-selective genes by microarray meta-analysis
-
C.W. Chang, W.C. Cheng, C.R. Chen, W.Y. Shu, M.L. Tsai, C.L. Huang, and I.C. Hsu Identification of human housekeeping genes and tissue-selective genes by microarray meta-analysis PLoS ONE 6 2011 e22859
-
(2011)
PLoS ONE
, vol.6
, pp. 22859
-
-
Chang, C.W.1
Cheng, W.C.2
Chen, C.R.3
Shu, W.Y.4
Tsai, M.L.5
Huang, C.L.6
Hsu, I.C.7
-
13
-
-
79955611823
-
Chemically defined conditions for human iPSC derivation and culture
-
G. Chen, D.R. Gulbranson, Z. Hou, J.M. Bolin, V. Ruotti, M.D. Probasco, K. Smuga-Otto, S.E. Howden, N.R. Diol, and N.E. Propson Chemically defined conditions for human iPSC derivation and culture Nat. Methods 8 2011 424 429
-
(2011)
Nat. Methods
, vol.8
, pp. 424-429
-
-
Chen, G.1
Gulbranson, D.R.2
Hou, Z.3
Bolin, J.M.4
Ruotti, V.5
Probasco, M.D.6
Smuga-Otto, K.7
Howden, S.E.8
Diol, N.R.9
Propson, N.E.10
-
14
-
-
78650758676
-
Histone H3K27ac separates active from poised enhancers and predicts developmental state
-
M.P. Creyghton, A.W. Cheng, G.G. Welstead, T. Kooistra, B.W. Carey, E.J. Steine, J. Hanna, M.A. Lodato, G.M. Frampton, and P.A. Sharp Histone H3K27ac separates active from poised enhancers and predicts developmental state Proc. Natl. Acad. Sci. USA 107 2010 21931 21936
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 21931-21936
-
-
Creyghton, M.P.1
Cheng, A.W.2
Welstead, G.G.3
Kooistra, T.4
Carey, B.W.5
Steine, E.J.6
Hanna, J.7
Lodato, M.A.8
Frampton, G.M.9
Sharp, P.A.10
-
15
-
-
79955583542
-
Mapping and analysis of chromatin state dynamics in nine human cell types
-
J. Ernst, P. Kheradpour, T.S. Mikkelsen, N. Shoresh, L.D. Ward, C.B. Epstein, X. Zhang, L. Wang, R. Issner, and M. Coyne Mapping and analysis of chromatin state dynamics in nine human cell types Nature 473 2011 43 49
-
(2011)
Nature
, vol.473
, pp. 43-49
-
-
Ernst, J.1
Kheradpour, P.2
Mikkelsen, T.S.3
Shoresh, N.4
Ward, L.D.5
Epstein, C.B.6
Zhang, X.7
Wang, L.8
Issner, R.9
Coyne, M.10
-
16
-
-
77952734605
-
Conservation and divergence of methylation patterning in plants and animals
-
S. Feng, S.J. Cokus, X. Zhang, P.Y. Chen, M. Bostick, M.G. Goll, J. Hetzel, J. Jain, S.H. Strauss, and M.E. Halpern Conservation and divergence of methylation patterning in plants and animals Proc. Natl. Acad. Sci. USA 107 2010 8689 8694
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 8689-8694
-
-
Feng, S.1
Cokus, S.J.2
Zhang, X.3
Chen, P.Y.4
Bostick, M.5
Goll, M.G.6
Hetzel, J.7
Jain, J.8
Strauss, S.H.9
Halpern, M.E.10
-
17
-
-
84878292277
-
Transcriptional and epigenetic dynamics during specification of human embryonic stem cells
-
10.1016/j.cell.2013.04.037 Published online May 9, 2013
-
C.A. Gifford, M.J. Ziller, H. Gu, C. Trapnell, J. Donaghey, A. Tsankov, A.K. Shalek, D.R. Kelley, A.A. Shishkin, and R. Issner Transcriptional and epigenetic dynamics during specification of human embryonic stem cells Cell 153 2013 10.1016/j.cell.2013.04.037 Published online May 9, 2013
-
(2013)
Cell
, vol.153
-
-
Gifford, C.A.1
Ziller, M.J.2
Gu, H.3
Trapnell, C.4
Donaghey, J.5
Tsankov, A.6
Shalek, A.K.7
Kelley, D.R.8
Shishkin, A.A.9
Issner, R.10
-
18
-
-
67749114140
-
Distinctive chromatin in human sperm packages genes for embryo development
-
S.S. Hammoud, D.A. Nix, H. Zhang, J. Purwar, D.T. Carrell, and B.R. Cairns Distinctive chromatin in human sperm packages genes for embryo development Nature 460 2009 473 478
-
(2009)
Nature
, vol.460
, pp. 473-478
-
-
Hammoud, S.S.1
Nix, D.A.2
Zhang, H.3
Purwar, J.4
Carrell, D.T.5
Cairns, B.R.6
-
19
-
-
77953809032
-
Distinct epigenomic landscapes of pluripotent and lineage-committed human cells
-
R.D. Hawkins, G.C. Hon, L.K. Lee, Q. Ngo, R. Lister, M. Pelizzola, L.E. Edsall, S. Kuan, Y. Luu, and S. Klugman Distinct epigenomic landscapes of pluripotent and lineage-committed human cells Cell Stem Cell 6 2010 479 491
-
(2010)
Cell Stem Cell
, vol.6
, pp. 479-491
-
-
Hawkins, R.D.1
Hon, G.C.2
Lee, L.K.3
Ngo, Q.4
Lister, R.5
Pelizzola, M.6
Edsall, L.E.7
Kuan, S.8
Luu, Y.9
Klugman, S.10
-
20
-
-
72849117741
-
A species-generalized probabilistic model-based definition of CpG islands
-
R.A. Irizarry, H. Wu, and A.P. Feinberg A species-generalized probabilistic model-based definition of CpG islands Mamm. Genome 20 2009 674 680
-
(2009)
Mamm. Genome
, vol.20
, pp. 674-680
-
-
Irizarry, R.A.1
Wu, H.2
Feinberg, A.P.3
-
21
-
-
4744372577
-
Severe global DNA hypomethylation blocks differentiation and induces histone hyperacetylation in embryonic stem cells
-
M. Jackson, A. Krassowska, N. Gilbert, T. Chevassut, L. Forrester, J. Ansell, and B. Ramsahoye Severe global DNA hypomethylation blocks differentiation and induces histone hyperacetylation in embryonic stem cells Mol. Cell. Biol. 24 2004 8862 8871
-
(2004)
Mol. Cell. Biol.
, vol.24
, pp. 8862-8871
-
-
Jackson, M.1
Krassowska, A.2
Gilbert, N.3
Chevassut, T.4
Forrester, L.5
Ansell, J.6
Ramsahoye, B.7
-
22
-
-
33847076849
-
Chromatin modifications and their function
-
T. Kouzarides Chromatin modifications and their function Cell 128 2007 693 705
-
(2007)
Cell
, vol.128
, pp. 693-705
-
-
Kouzarides, T.1
-
23
-
-
77954100084
-
Transposable elements have rewired the core regulatory network of human embryonic stem cells
-
G. Kunarso, N.Y. Chia, J. Jeyakani, C. Hwang, X. Lu, Y.S. Chan, H.H. Ng, and G. Bourque Transposable elements have rewired the core regulatory network of human embryonic stem cells Nat. Genet. 42 2010 631 634
-
(2010)
Nat. Genet.
, vol.42
, pp. 631-634
-
-
Kunarso, G.1
Chia, N.Y.2
Jeyakani, J.3
Hwang, C.4
Lu, X.5
Chan, Y.S.6
Ng, H.H.7
Bourque, G.8
-
24
-
-
77649267695
-
Dynamic changes in the human methylome during differentiation
-
L. Laurent, E. Wong, G. Li, T. Huynh, A. Tsirigos, C.T. Ong, H.M. Low, K.W. Kin Sung, I. Rigoutsos, J. Loring, and C.L. Wei Dynamic changes in the human methylome during differentiation Genome Res. 20 2010 320 331
-
(2010)
Genome Res.
, vol.20
, pp. 320-331
-
-
Laurent, L.1
Wong, E.2
Li, G.3
Huynh, T.4
Tsirigos, A.5
Ong, C.T.6
Low, H.M.7
Kin Sung, K.W.8
Rigoutsos, I.9
Loring, J.10
Wei, C.L.11
-
25
-
-
33646865180
-
Control of developmental regulators by Polycomb in human embryonic stem cells
-
T.I. Lee, R.G. Jenner, L.A. Boyer, M.G. Guenther, S.S. Levine, R.M. Kumar, B. Chevalier, S.E. Johnstone, M.F. Cole, and K. Isono Control of developmental regulators by Polycomb in human embryonic stem cells Cell 125 2006 301 313
-
(2006)
Cell
, vol.125
, pp. 301-313
-
-
Lee, T.I.1
Jenner, R.G.2
Boyer, L.A.3
Guenther, M.G.4
Levine, S.S.5
Kumar, R.M.6
Chevalier, B.7
Johnstone, S.E.8
Cole, M.F.9
Isono, K.10
-
26
-
-
84858412556
-
Silencing of endogenous retroviruses: When and why do histone marks predominate?
-
D.C. Leung, and M.C. Lorincz Silencing of endogenous retroviruses: when and why do histone marks predominate? Trends Biochem. Sci. 37 2012 127 133
-
(2012)
Trends Biochem. Sci.
, vol.37
, pp. 127-133
-
-
Leung, D.C.1
Lorincz, M.C.2
-
27
-
-
0026708177
-
Targeted mutation of the DNA methyltransferase gene results in embryonic lethality
-
E. Li, T.H. Bestor, and R. Jaenisch Targeted mutation of the DNA methyltransferase gene results in embryonic lethality Cell 69 1992 915 926
-
(1992)
Cell
, vol.69
, pp. 915-926
-
-
Li, E.1
Bestor, T.H.2
Jaenisch, R.3
-
28
-
-
78649969065
-
The DNA methylome of human peripheral blood mononuclear cells
-
Y. Li, J. Zhu, G. Tian, N. Li, Q. Li, M. Ye, H. Zheng, J. Yu, H. Wu, and J. Sun The DNA methylome of human peripheral blood mononuclear cells PLoS Biol. 8 2010 e1000533
-
(2010)
PLoS Biol.
, vol.8
, pp. 1000533
-
-
Li, Y.1
Zhu, J.2
Tian, G.3
Li, N.4
Li, Q.5
Ye, M.6
Zheng, H.7
Yu, J.8
Wu, H.9
Sun, J.10
-
29
-
-
70450217879
-
Human DNA methylomes at base resolution show widespread epigenomic differences
-
R. Lister, M. Pelizzola, R.H. Dowen, R.D. Hawkins, G. Hon, J. Tonti-Filippini, J.R. Nery, L. Lee, Z. Ye, and Q.M. Ngo Human DNA methylomes at base resolution show widespread epigenomic differences Nature 462 2009 315 322
-
(2009)
Nature
, vol.462
, pp. 315-322
-
-
Lister, R.1
Pelizzola, M.2
Dowen, R.H.3
Hawkins, R.D.4
Hon, G.5
Tonti-Filippini, J.6
Nery, J.R.7
Lee, L.8
Ye, Z.9
Ngo, Q.M.10
-
30
-
-
79952264847
-
Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells
-
R. Lister, M. Pelizzola, Y.S. Kida, R.D. Hawkins, J.R. Nery, G. Hon, J. Antosiewicz-Bourget, R. O'Malley, R. Castanon, and S. Klugman Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells Nature 471 2011 68 73
-
(2011)
Nature
, vol.471
, pp. 68-73
-
-
Lister, R.1
Pelizzola, M.2
Kida, Y.S.3
Hawkins, R.D.4
Nery, J.R.5
Hon, G.6
Antosiewicz-Bourget, J.7
O'Malley, R.8
Castanon, R.9
Klugman, S.10
-
31
-
-
49649125042
-
Genome-scale DNA methylation maps of pluripotent and differentiated cells
-
A. Meissner, T.S. Mikkelsen, H. Gu, M. Wernig, J. Hanna, A. Sivachenko, X. Zhang, B.E. Bernstein, C. Nusbaum, and D.B. Jaffe Genome-scale DNA methylation maps of pluripotent and differentiated cells Nature 454 2008 766 770
-
(2008)
Nature
, vol.454
, pp. 766-770
-
-
Meissner, A.1
Mikkelsen, T.S.2
Gu, H.3
Wernig, M.4
Hanna, J.5
Sivachenko, A.6
Zhang, X.7
Bernstein, B.E.8
Nusbaum, C.9
Jaffe, D.B.10
-
32
-
-
78650684739
-
GC-rich sequence elements recruit PRC2 in mammalian ES cells
-
E.M. Mendenhall, R.P. Koche, T. Truong, V.W. Zhou, B. Issac, A.S. Chi, M. Ku, and B.E. Bernstein GC-rich sequence elements recruit PRC2 in mammalian ES cells PLoS Genet. 6 2010 e1001244
-
(2010)
PLoS Genet.
, vol.6
, pp. 1001244
-
-
Mendenhall, E.M.1
Koche, R.P.2
Truong, T.3
Zhou, V.W.4
Issac, B.5
Chi, A.S.6
Ku, M.7
Bernstein, B.E.8
-
33
-
-
51649129596
-
Lineage-specific polycomb targets and de novo DNA methylation define restriction and potential of neuronal progenitors
-
F. Mohn, M. Weber, M. Rebhan, T.C. Roloff, J. Richter, M.B. Stadler, M. Bibel, and D. Schübeler Lineage-specific polycomb targets and de novo DNA methylation define restriction and potential of neuronal progenitors Mol. Cell 30 2008 755 766
-
(2008)
Mol. Cell
, vol.30
, pp. 755-766
-
-
Mohn, F.1
Weber, M.2
Rebhan, M.3
Roloff, T.C.4
Richter, J.5
Stadler, M.B.6
Bibel, M.7
Schübeler, D.8
-
34
-
-
80052937538
-
Sperm methylation profiles reveal features of epigenetic inheritance and evolution in primates
-
A. Molaro, E. Hodges, F. Fang, Q. Song, W.R. McCombie, G.J. Hannon, and A.D. Smith Sperm methylation profiles reveal features of epigenetic inheritance and evolution in primates Cell 146 2011 1029 1041
-
(2011)
Cell
, vol.146
, pp. 1029-1041
-
-
Molaro, A.1
Hodges, E.2
Fang, F.3
Song, Q.4
McCombie, W.R.5
Hannon, G.J.6
Smith, A.D.7
-
35
-
-
0033615717
-
DNA methyltransferases Dnmt3a and Dnmt3b are essential for de novo methylation and mammalian development
-
M. Okano, D.W. Bell, D.A. Haber, and E. Li DNA methyltransferases Dnmt3a and Dnmt3b are essential for de novo methylation and mammalian development Cell 99 1999 247 257
-
(1999)
Cell
, vol.99
, pp. 247-257
-
-
Okano, M.1
Bell, D.W.2
Haber, D.A.3
Li, E.4
-
36
-
-
79952901680
-
Enhancer function: New insights into the regulation of tissue-specific gene expression
-
C.T. Ong, and V.G. Corces Enhancer function: new insights into the regulation of tissue-specific gene expression Nat. Rev. Genet. 12 2011 283 293
-
(2011)
Nat. Rev. Genet.
, vol.12
, pp. 283-293
-
-
Ong, C.T.1
Corces, V.G.2
-
37
-
-
84867095528
-
A temporal chromatin signature in human embryonic stem cells identifies regulators of cardiac development
-
S.L. Paige, S. Thomas, C.L. Stoick-Cooper, H. Wang, L. Maves, R. Sandstrom, L. Pabon, H. Reinecke, G. Pratt, and G. Keller A temporal chromatin signature in human embryonic stem cells identifies regulators of cardiac development Cell 151 2012 221 232
-
(2012)
Cell
, vol.151
, pp. 221-232
-
-
Paige, S.L.1
Thomas, S.2
Stoick-Cooper, C.L.3
Wang, H.4
Maves, L.5
Sandstrom, R.6
Pabon, L.7
Reinecke, H.8
Pratt, G.9
Keller, G.10
-
38
-
-
34548434716
-
Whole-genome analysis of histone H3 lysine 4 and lysine 27 methylation in human embryonic stem cells
-
G. Pan, S. Tian, J. Nie, C. Yang, V. Ruotti, H. Wei, G.A. Jonsdottir, R. Stewart, and J.A. Thomson Whole-genome analysis of histone H3 lysine 4 and lysine 27 methylation in human embryonic stem cells Cell Stem Cell 1 2007 299 312
-
(2007)
Cell Stem Cell
, vol.1
, pp. 299-312
-
-
Pan, G.1
Tian, S.2
Nie, J.3
Yang, C.4
Ruotti, V.5
Wei, H.6
Jonsdottir, G.A.7
Stewart, R.8
Thomson, J.A.9
-
39
-
-
79951516056
-
A unique chromatin signature uncovers early developmental enhancers in humans
-
A. Rada-Iglesias, R. Bajpai, T. Swigut, S.A. Brugmann, R.A. Flynn, and J. Wysocka A unique chromatin signature uncovers early developmental enhancers in humans Nature 470 2011 279 283
-
(2011)
Nature
, vol.470
, pp. 279-283
-
-
Rada-Iglesias, A.1
Bajpai, R.2
Swigut, T.3
Brugmann, S.A.4
Flynn, R.A.5
Wysocka, J.6
-
40
-
-
84876007572
-
RFECS: A Random-Forest based algorithm for Enhancer Identification from Chromatin State
-
N. Rajagopal, W. Xie, Y. Li, U. Wagner, W. Wang, J. Stamatoyannopoulos, J. Ernst, M. Kellis, and B. Ren RFECS: a Random-Forest based algorithm for Enhancer Identification from Chromatin State PLoS Comput. Biol. 9 2013 e1002968
-
(2013)
PLoS Comput. Biol.
, vol.9
, pp. 1002968
-
-
Rajagopal, N.1
Xie, W.2
Li, Y.3
Wagner, U.4
Wang, W.5
Stamatoyannopoulos, J.6
Ernst, J.7
Kellis, M.8
Ren, B.9
-
41
-
-
32044442759
-
Promoter features related to tissue specificity as measured by Shannon entropy
-
J. Schug, W.P. Schuller, C. Kappen, J.M. Salbaum, M. Bucan, and C.J. Stoeckert Jr. Promoter features related to tissue specificity as measured by Shannon entropy Genome Biol. 6 2005 R33
-
(2005)
Genome Biol.
, vol.6
, pp. 33
-
-
Schug, J.1
Schuller, W.P.2
Kappen, C.3
Salbaum, J.M.4
Bucan, M.5
Stoeckert, Jr.C.J.6
-
42
-
-
84355163093
-
DNA-binding factors shape the mouse methylome at distal regulatory regions
-
M.B. Stadler, R. Murr, L. Burger, R. Ivanek, F. Lienert, A. Schöler, E. van Nimwegen, C. Wirbelauer, E.J. Oakeley, and D. Gaidatzis DNA-binding factors shape the mouse methylome at distal regulatory regions Nature 480 2011 490 495
-
(2011)
Nature
, vol.480
, pp. 490-495
-
-
Stadler, M.B.1
Murr, R.2
Burger, L.3
Ivanek, R.4
Lienert, F.5
Schöler, A.6
Van Nimwegen, E.7
Wirbelauer, C.8
Oakeley, E.J.9
Gaidatzis, D.10
-
43
-
-
2942534403
-
Human embryonic stem cells express a unique set of microRNAs
-
M.R. Suh, Y. Lee, J.Y. Kim, S.K. Kim, S.H. Moon, J.Y. Lee, K.Y. Cha, H.M. Chung, H.S. Yoon, and S.Y. Moon Human embryonic stem cells express a unique set of microRNAs Dev. Biol. 270 2004 488 498
-
(2004)
Dev. Biol.
, vol.270
, pp. 488-498
-
-
Suh, M.R.1
Lee, Y.2
Kim, J.Y.3
Kim, S.K.4
Moon, S.H.5
Lee, J.Y.6
Cha, K.Y.7
Chung, H.M.8
Yoon, H.S.9
Moon, S.Y.10
-
44
-
-
0032491416
-
Embryonic stem cell lines derived from human blastocysts
-
J.A. Thomson, J. Itskovitz-Eldor, S.S. Shapiro, M.A. Waknitz, J.J. Swiergiel, V.S. Marshall, and J.M. Jones Embryonic stem cell lines derived from human blastocysts Science 282 1998 1145 1147
-
(1998)
Science
, vol.282
, pp. 1145-1147
-
-
Thomson, J.A.1
Itskovitz-Eldor, J.2
Shapiro, S.S.3
Waknitz, M.A.4
Swiergiel, J.J.5
Marshall, V.S.6
Jones, J.M.7
-
45
-
-
33745270104
-
Maintenance of self-renewal ability of mouse embryonic stem cells in the absence of DNA methyltransferases Dnmt1, Dnmt3a and Dnmt3b
-
A. Tsumura, T. Hayakawa, Y. Kumaki, S. Takebayashi, M. Sakaue, C. Matsuoka, K. Shimotohno, F. Ishikawa, E. Li, and H.R. Ueda Maintenance of self-renewal ability of mouse embryonic stem cells in the absence of DNA methyltransferases Dnmt1, Dnmt3a and Dnmt3b Genes Cells 11 2006 805 814
-
(2006)
Genes Cells
, vol.11
, pp. 805-814
-
-
Tsumura, A.1
Hayakawa, T.2
Kumaki, Y.3
Takebayashi, S.4
Sakaue, M.5
Matsuoka, C.6
Shimotohno, K.7
Ishikawa, F.8
Li, E.9
Ueda, H.R.10
-
46
-
-
84861982240
-
Bivalent histone modifications in early embryogenesis
-
N.L. Vastenhouw, and A.F. Schier Bivalent histone modifications in early embryogenesis Curr. Opin. Cell Biol. 24 2012 374 386
-
(2012)
Curr. Opin. Cell Biol.
, vol.24
, pp. 374-386
-
-
Vastenhouw, N.L.1
Schier, A.F.2
-
47
-
-
78649647544
-
A mesoderm-derived precursor for mesenchymal stem and endothelial cells
-
M.A. Vodyanik, J. Yu, X. Zhang, S. Tian, R. Stewart, J.A. Thomson, and I.I. Slukvin A mesoderm-derived precursor for mesenchymal stem and endothelial cells Cell Stem Cell 7 2010 718 729
-
(2010)
Cell Stem Cell
, vol.7
, pp. 718-729
-
-
Vodyanik, M.A.1
Yu, J.2
Zhang, X.3
Tian, S.4
Stewart, R.5
Thomson, J.A.6
Slukvin, I.I.7
-
48
-
-
82955207588
-
Mechanisms and functions of Tet protein-mediated 5-methylcytosine oxidation
-
H. Wu, and Y. Zhang Mechanisms and functions of Tet protein-mediated 5-methylcytosine oxidation Genes Dev. 25 2011 2436 2452
-
(2011)
Genes Dev.
, vol.25
, pp. 2436-2452
-
-
Wu, H.1
Zhang, Y.2
-
49
-
-
84857331867
-
Base-resolution analyses of sequence and parent-of-origin dependent DNA methylation in the mouse genome
-
W. Xie, C.L. Barr, A. Kim, F. Yue, A.Y. Lee, J. Eubanks, E.L. Dempster, and B. Ren Base-resolution analyses of sequence and parent-of-origin dependent DNA methylation in the mouse genome Cell 148 2012 816 831
-
(2012)
Cell
, vol.148
, pp. 816-831
-
-
Xie, W.1
Barr, C.L.2
Kim, A.3
Yue, F.4
Lee, A.Y.5
Eubanks, J.6
Dempster, E.L.7
Ren, B.8
-
50
-
-
1842853507
-
BMP4 initiates human embryonic stem cell differentiation to trophoblast
-
R.H. Xu, X. Chen, D.S. Li, R. Li, G.C. Addicks, C. Glennon, T.P. Zwaka, and J.A. Thomson BMP4 initiates human embryonic stem cell differentiation to trophoblast Nat. Biotechnol. 20 2002 1261 1264
-
(2002)
Nat. Biotechnol.
, vol.20
, pp. 1261-1264
-
-
Xu, R.H.1
Chen, X.2
Li, D.S.3
Li, R.4
Addicks, G.C.5
Glennon, C.6
Zwaka, T.P.7
Thomson, J.A.8
-
51
-
-
17644445419
-
Gene dosage-dependent embryonic development and proliferation defects in mice lacking the transcriptional integrator p300
-
T.P. Yao, S.P. Oh, M. Fuchs, N.D. Zhou, L.E. Ch'ng, D. Newsome, R.T. Bronson, E. Li, D.M. Livingston, and R. Eckner Gene dosage-dependent embryonic development and proliferation defects in mice lacking the transcriptional integrator p300 Cell 93 1998 361 372
-
(1998)
Cell
, vol.93
, pp. 361-372
-
-
Yao, T.P.1
Oh, S.P.2
Fuchs, M.3
Zhou, N.D.4
Ch'Ng, L.E.5
Newsome, D.6
Bronson, R.T.7
Li, E.8
Livingston, D.M.9
Eckner, R.10
-
52
-
-
79952660821
-
Control of the embryonic stem cell state
-
R.A. Young Control of the embryonic stem cell state Cell 144 2011 940 954
-
(2011)
Cell
, vol.144
, pp. 940-954
-
-
Young, R.A.1
-
53
-
-
79952161362
-
FGF2 sustains NANOG and switches the outcome of BMP4-induced human embryonic stem cell differentiation
-
P. Yu, G. Pan, J. Yu, and J.A. Thomson FGF2 sustains NANOG and switches the outcome of BMP4-induced human embryonic stem cell differentiation Cell Stem Cell 8 2011 326 334
-
(2011)
Cell Stem Cell
, vol.8
, pp. 326-334
-
-
Yu, P.1
Pan, G.2
Yu, J.3
Thomson, J.A.4
-
54
-
-
77952355762
-
Genome-wide evolutionary analysis of eukaryotic DNA methylation
-
A. Zemach, I.E. McDaniel, P. Silva, and D. Zilberman Genome-wide evolutionary analysis of eukaryotic DNA methylation Science 328 2010 916 919
-
(2010)
Science
, vol.328
, pp. 916-919
-
-
Zemach, A.1
McDaniel, I.E.2
Silva, P.3
Zilberman, D.4
-
55
-
-
34548424709
-
Whole-genome mapping of histone H3 Lys4 and 27 trimethylations reveals distinct genomic compartments in human embryonic stem cells
-
X.D. Zhao, X. Han, J.L. Chew, J. Liu, K.P. Chiu, A. Choo, Y.L. Orlov, W.K. Sung, A. Shahab, and V.A. Kuznetsov Whole-genome mapping of histone H3 Lys4 and 27 trimethylations reveals distinct genomic compartments in human embryonic stem cells Cell Stem Cell 1 2007 286 298
-
(2007)
Cell Stem Cell
, vol.1
, pp. 286-298
-
-
Zhao, X.D.1
Han, X.2
Chew, J.L.3
Liu, J.4
Chiu, K.P.5
Choo, A.6
Orlov, Y.L.7
Sung, W.K.8
Shahab, A.9
Kuznetsov, V.A.10
-
56
-
-
52949138674
-
On the nature of human housekeeping genes
-
J. Zhu, F. He, S. Hu, and J. Yu On the nature of human housekeeping genes Trends Genet. 24 2008 481 484
-
(2008)
Trends Genet.
, vol.24
, pp. 481-484
-
-
Zhu, J.1
He, F.2
Hu, S.3
Yu, J.4
-
57
-
-
84873310426
-
Genome-wide chromatin state transitions associated with developmental and environmental cues
-
J. Zhu, M. Adli, J.Y. Zou, G. Verstappen, M. Coyne, X. Zhang, T. Durham, M. Miri, V. Deshpande, and P.L. De Jager Genome-wide chromatin state transitions associated with developmental and environmental cues Cell 152 2013 642 654
-
(2013)
Cell
, vol.152
, pp. 642-654
-
-
Zhu, J.1
Adli, M.2
Zou, J.Y.3
Verstappen, G.4
Coyne, M.5
Zhang, X.6
Durham, T.7
Miri, M.8
Deshpande, V.9
De Jager, P.L.10
-
58
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
S.F. Altschul, T.L. Madden, A.A. Schäffer, J. Zhang, Z. Zhang, W. Miller, and D.J. Lipman Gapped BLAST and PSI-BLAST: a new generation of protein database search programs Nucleic Acids Res. 25 1997 3389 3402
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
59
-
-
9144232912
-
UniProt: The Universal Protein knowledgebase
-
R. Apweiler, A. Bairoch, C.H. Wu, W.C. Barker, B. Boeckmann, S. Ferro, E. Gasteiger, H. Huang, R. Lopez, and M. Magrane UniProt: the Universal Protein knowledgebase Nucleic Acids Res. 32 Database issue 2004 D115 D119
-
(2004)
Nucleic Acids Res.
, vol.32
, Issue.DATABASE ISSUE
-
-
Apweiler, R.1
Bairoch, A.2
Wu, C.H.3
Barker, W.C.4
Boeckmann, B.5
Ferro, S.6
Gasteiger, E.7
Huang, H.8
Lopez, R.9
Magrane, M.10
-
60
-
-
38549096565
-
JASPAR, the open access database of transcription factor-binding profiles: New content and tools in the 2008 update
-
J.C. Bryne, E. Valen, M.H. Tang, T. Marstrand, O. Winther, I. da Piedade, A. Krogh, B. Lenhard, and A. Sandelin JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update Nucleic Acids Res. 36 Database issue 2008 D102 D106
-
(2008)
Nucleic Acids Res.
, vol.36
, Issue.DATABASE ISSUE
-
-
Bryne, J.C.1
Valen, E.2
Tang, M.H.3
Marstrand, T.4
Winther, O.5
Da Piedade, I.6
Krogh, A.7
Lenhard, B.8
Sandelin, A.9
-
61
-
-
84860742355
-
NONCODE v3.0: Integrative annotation of long noncoding RNAs
-
D. Bu, K. Yu, S. Sun, C. Xie, G. Skogerbø, R. Miao, H. Xiao, Q. Liao, H. Luo, and G. Zhao NONCODE v3.0: integrative annotation of long noncoding RNAs Nucleic Acids Res. 40 Database issue 2012 D210 D215
-
(2012)
Nucleic Acids Res.
, vol.40
, Issue.DATABASE ISSUE
-
-
Bu, D.1
Yu, K.2
Sun, S.3
Xie, C.4
Skogerbø, G.5
Miao, R.6
Xiao, H.7
Liao, Q.8
Luo, H.9
Zhao, G.10
-
62
-
-
80052978224
-
Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses
-
M.N. Cabili, C. Trapnell, L. Goff, M. Koziol, B. Tazon-Vega, A. Regev, and J.L. Rinn Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses Genes Dev. 25 2011 1915 1927
-
(2011)
Genes Dev.
, vol.25
, pp. 1915-1927
-
-
Cabili, M.N.1
Trapnell, C.2
Goff, L.3
Koziol, M.4
Tazon-Vega, B.5
Regev, A.6
Rinn, J.L.7
-
63
-
-
84865727393
-
The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression
-
T. Derrien, R. Johnson, G. Bussotti, A. Tanzer, S. Djebali, H. Tilgner, G. Guernec, D. Martin, A. Merkel, and D.G. Knowles The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression Genome Res. 22 2012 1775 1789
-
(2012)
Genome Res.
, vol.22
, pp. 1775-1789
-
-
Derrien, T.1
Johnson, R.2
Bussotti, G.3
Tanzer, A.4
Djebali, S.5
Tilgner, H.6
Guernec, G.7
Martin, D.8
Merkel, A.9
Knowles, D.G.10
-
64
-
-
79953123510
-
Breast cancer methylomes establish an epigenomic foundation for metastasis
-
75ra25
-
F. Fang, S. Turcan, A. Rimner, A. Kaufman, D. Giri, L.G. Morris, R. Shen, V. Seshan, Q. Mo, and A. Heguy Breast cancer methylomes establish an epigenomic foundation for metastasis Sci. Transl. Med. 3 2011 75ra25
-
(2011)
Sci. Transl. Med.
, vol.3
-
-
Fang, F.1
Turcan, S.2
Rimner, A.3
Kaufman, A.4
Giri, D.5
Morris, L.G.6
Shen, R.7
Seshan, V.8
Mo, Q.9
Heguy, A.10
-
66
-
-
84857066786
-
Modular regulatory principles of large non-coding RNAs
-
M. Guttman, and J.L. Rinn Modular regulatory principles of large non-coding RNAs Nature 482 2012 339 346
-
(2012)
Nature
, vol.482
, pp. 339-346
-
-
Guttman, M.1
Rinn, J.L.2
-
67
-
-
77952567987
-
Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities
-
S. Heinz, C. Benner, N. Spann, E. Bertolino, Y.C. Lin, P. Laslo, J.X. Cheng, C. Murre, H. Singh, and C.K. Glass Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities Mol. Cell 38 2010 576 589
-
(2010)
Mol. Cell
, vol.38
, pp. 576-589
-
-
Heinz, S.1
Benner, C.2
Spann, N.3
Bertolino, E.4
Lin, Y.C.5
Laslo, P.6
Cheng, J.X.7
Murre, C.8
Singh, H.9
Glass, C.K.10
-
68
-
-
84856528270
-
Global DNA hypomethylation coupled to repressive chromatin domain formation and gene silencing in breast cancer
-
G.C. Hon, R.D. Hawkins, O.L. Caballero, C. Lo, R. Lister, M. Pelizzola, A. Valsesia, Z. Ye, S. Kuan, and L.E. Edsall Global DNA hypomethylation coupled to repressive chromatin domain formation and gene silencing in breast cancer Genome Res. 22 2012 246 258
-
(2012)
Genome Res.
, vol.22
, pp. 246-258
-
-
Hon, G.C.1
Hawkins, R.D.2
Caballero, O.L.3
Lo, C.4
Lister, R.5
Pelizzola, M.6
Valsesia, A.7
Ye, Z.8
Kuan, S.9
Edsall, L.E.10
-
69
-
-
33646133653
-
The UCSC Known Genes
-
F. Hsu, W.J. Kent, H. Clawson, R.M. Kuhn, M. Diekhans, and D. Haussler The UCSC Known Genes Bioinformatics 22 2006 1036 1046
-
(2006)
Bioinformatics
, vol.22
, pp. 1036-1046
-
-
Hsu, F.1
Kent, W.J.2
Clawson, H.3
Kuhn, R.M.4
Diekhans, M.5
Haussler, D.6
-
70
-
-
18444402182
-
The Ensembl genome database project
-
T. Hubbard, D. Barker, E. Birney, G. Cameron, Y. Chen, L. Clark, T. Cox, J. Cuff, V. Curwen, and T. Down The Ensembl genome database project Nucleic Acids Res. 30 2002 38 41
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 38-41
-
-
Hubbard, T.1
Barker, D.2
Birney, E.3
Cameron, G.4
Chen, Y.5
Clark, L.6
Cox, T.7
Cuff, J.8
Curwen, V.9
Down, T.10
-
71
-
-
34547582418
-
CPC: Assess the protein-coding potential of transcripts using sequence features and support vector machine
-
L. Kong, Y. Zhang, Z.Q. Ye, X.Q. Liu, S.Q. Zhao, L. Wei, and G. Gao CPC: assess the protein-coding potential of transcripts using sequence features and support vector machine Nucleic Acids Res. 35 Web Server issue 2007 W345 W349
-
(2007)
Nucleic Acids Res.
, vol.35
, Issue.WEB SERVER ISSUE
-
-
Kong, L.1
Zhang, Y.2
Ye, Z.Q.3
Liu, X.Q.4
Zhao, S.Q.5
Wei, L.6
Gao, G.7
-
72
-
-
0037208166
-
TRANSFAC: Transcriptional regulation, from patterns to profiles
-
V. Matys, E. Fricke, R. Geffers, E. Gössling, M. Haubrock, R. Hehl, K. Hornischer, D. Karas, A.E. Kel, and O.V. Kel-Margoulis TRANSFAC: transcriptional regulation, from patterns to profiles Nucleic Acids Res. 31 2003 374 378
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 374-378
-
-
Matys, V.1
Fricke, E.2
Geffers, R.3
Gössling, E.4
Haubrock, M.5
Hehl, R.6
Hornischer, K.7
Karas, D.8
Kel, A.E.9
Kel-Margoulis, O.V.10
-
73
-
-
77952214662
-
GREAT improves functional interpretation of cis-regulatory regions
-
C.Y. McLean, D. Bristor, M. Hiller, S.L. Clarke, B.T. Schaar, C.B. Lowe, A.M. Wenger, and G. Bejerano GREAT improves functional interpretation of cis-regulatory regions Nat. Biotechnol. 28 2010 495 501
-
(2010)
Nat. Biotechnol.
, vol.28
, pp. 495-501
-
-
McLean, C.Y.1
Bristor, D.2
Hiller, M.3
Clarke, S.L.4
Schaar, B.T.5
Lowe, C.B.6
Wenger, A.M.7
Bejerano, G.8
-
74
-
-
84859436530
-
NCBI Reference Sequences (RefSeq): Current status, new features and genome annotation policy
-
K.D. Pruitt, T. Tatusova, G.R. Brown, and D.R. Maglott NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy Nucleic Acids Res. 40 Database issue 2012 D130 D135
-
(2012)
Nucleic Acids Res.
, vol.40
, Issue.DATABASE ISSUE
-
-
Pruitt, K.D.1
Tatusova, T.2
Brown, G.R.3
Maglott, D.R.4
-
75
-
-
78651303899
-
UniPROBE, update 2011: Expanded content and search tools in the online database of protein-binding microarray data on protein-DNA interactions
-
K. Robasky, and M.L. Bulyk UniPROBE, update 2011: expanded content and search tools in the online database of protein-binding microarray data on protein-DNA interactions Nucleic Acids Res. 39 Database issue 2011 D124 D128
-
(2011)
Nucleic Acids Res.
, vol.39
, Issue.DATABASE ISSUE
-
-
Robasky, K.1
Bulyk, M.L.2
-
76
-
-
84864462544
-
A map of the cis-regulatory sequences in the mouse genome
-
Y. Shen, F. Yue, D.F. McCleary, Z. Ye, L. Edsall, S. Kuan, U. Wagner, J. Dixon, L. Lee, V.V. Lobanenkov, and B. Ren A map of the cis-regulatory sequences in the mouse genome Nature 488 2012 116 120
-
(2012)
Nature
, vol.488
, pp. 116-120
-
-
Shen, Y.1
Yue, F.2
McCleary, D.F.3
Ye, Z.4
Edsall, L.5
Kuan, S.6
Wagner, U.7
Dixon, J.8
Lee, L.9
Lobanenkov, V.V.10
Ren, B.11
-
77
-
-
79958105825
-
Improved similarity scores for comparing motifs
-
E. Tanaka, T. Bailey, C.E. Grant, W.S. Noble, and U. Keich Improved similarity scores for comparing motifs Bioinformatics 27 2011 1603 1609
-
(2011)
Bioinformatics
, vol.27
, pp. 1603-1609
-
-
Tanaka, E.1
Bailey, T.2
Grant, C.E.3
Noble, W.S.4
Keich, U.5
-
78
-
-
84859885816
-
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
-
C. Trapnell, A. Roberts, L. Goff, G. Pertea, D. Kim, D.R. Kelley, H. Pimentel, S.L. Salzberg, J.L. Rinn, and L. Pachter Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks Nat. Protoc. 7 2012 562 578
-
(2012)
Nat. Protoc.
, vol.7
, pp. 562-578
-
-
Trapnell, C.1
Roberts, A.2
Goff, L.3
Pertea, G.4
Kim, D.5
Kelley, D.R.6
Pimentel, H.7
Salzberg, S.L.8
Rinn, J.L.9
Pachter, L.10
-
79
-
-
33745541234
-
CpG island methylator phenotype underlies sporadic microsatellite instability and is tightly associated with BRAF mutation in colorectal cancer
-
D.J. Weisenberger, K.D. Siegmund, M. Campan, J. Young, T.I. Long, M.A. Faasse, G.H. Kang, M. Widschwendter, D. Weener, and D. Buchanan CpG island methylator phenotype underlies sporadic microsatellite instability and is tightly associated with BRAF mutation in colorectal cancer Nat. Genet. 38 2006 787 793
-
(2006)
Nat. Genet.
, vol.38
, pp. 787-793
-
-
Weisenberger, D.J.1
Siegmund, K.D.2
Campan, M.3
Young, J.4
Long, T.I.5
Faasse, M.A.6
Kang, G.H.7
Widschwendter, M.8
Weener, D.9
Buchanan, D.10
-
80
-
-
77950472891
-
HPDI: A database of experimental human protein-DNA interactions
-
Z. Xie, S. Hu, S. Blackshaw, H. Zhu, and J. Qian hPDI: a database of experimental human protein-DNA interactions Bioinformatics 26 2010 287 289
-
(2010)
Bioinformatics
, vol.26
, pp. 287-289
-
-
Xie, Z.1
Hu, S.2
Blackshaw, S.3
Zhu, H.4
Qian, J.5
-
81
-
-
53849146020
-
Model-based analysis of ChIP-Seq (MACS)
-
Y. Zhang, T. Liu, C.A. Meyer, J. Eeckhoute, D.S. Johnson, B.E. Bernstein, C. Nusbaum, R.M. Myers, M. Brown, W. Li, and X.S. Liu Model-based analysis of ChIP-Seq (MACS) Genome Biol. 9 2008 R137
-
(2008)
Genome Biol.
, vol.9
, pp. 137
-
-
Zhang, Y.1
Liu, T.2
Meyer, C.A.3
Eeckhoute, J.4
Johnson, D.S.5
Bernstein, B.E.6
Nusbaum, C.7
Myers, R.M.8
Brown, M.9
Li, W.10
Liu, X.S.11
|