Tracking the mechanical dynamics of human embryonic stem cell chromatin

Epigenetics and Chromatin

Volumn 5, Issue 1, 2012, Pages

  Hinde, Elizabeth ^a   Cardarelli, Francesco ^b   Chen, Aaron ^c   Khine, Michelle ^a,c   Gratton, Enrico ^a  

^a University of California at Irvine   (United States)

^b CENTER FOR NANOTECHNOLOGY INNOVATION NEST   (Italy)

^c UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CELL DIFFERENTIATION; CELL METABOLISM; CELL MOTION; CHROMATIN; CONTROLLED STUDY; EMBRYONIC STEM CELL; ENERGY; GENETIC TRANSCRIPTION; HEART MUSCLE CELL; HUMAN; HUMAN CELL; MOLECULAR DYNAMICS; MOLECULAR MECHANICS; PLURIPOTENT STEM CELL; PRIORITY JOURNAL;

EID: 84871377102     PISSN: None     EISSN: 17568935     Source Type: Journal    
DOI: 10.1186/1756-8935-5-20     Document Type: Article

References (33)

1. Self-renewal versus differentiation of mouse embryonic stem cells. KS O'Shea, Biol Reprod 2004 71 1755 1765 10.1095/biolreprod.104.028100 15329329 (Pubitemid 39586917)
2. Chromatin in pluripotent embryonic stem cells and differentiation. E Meshorer, T Misteli, Nat Rev Mol Cell Biol 2006 7 540 546 10.1038/nrm1938 16723974 (Pubitemid 44036459)
3. Chromatin plasticity and genome organization in pluripotent embryonic stem cells. A Mattout, E Meshorer, Curr Opin Cell Biol 2010 22 334 341 10.1016/j.ceb.2010.02.001 20226651
4. Chromatin in embryonic stem cell neuronal differentiation. E Meshorer, Histol Histopathol 2007 22 311 319 17163405 (Pubitemid 46117117)
5. Hyperdynamic plasticity of chromatin proteins in pluripotent embryonic stem cells. E Meshorer, et al. Dev Cell 2006 10 105 116 10.1016/j.devcel.2005. 10.017 16399082 (Pubitemid 43025681)
6. Imaging chromatin in embryonic stem cells. E Meshorer, StemBook (ed. The Stem Cell Research Community) 2008 StemBook http://www.stembook.org
7. Ultrastructure of human embryonic stem cells and spontaneous and retinoic acid-induced differentiating cells. SH Park, et al. Ultrastruct Pathol 2004 28 229 238 10.1080/01913120490515595 15693634 (Pubitemid 39490453)
8. Cell differentiation induces TIF1beta association with centromeric heterochromatin via an HP1 interaction. F Cammas, et al. J Cell Sci 2002 115 3439 3448 12154074 (Pubitemid 34994033)
9. Chromatin-related proteins in pluripotent mouse embryonic stem cells are downregulated after removal of leukemia inhibitory factor. A Kurisaki, et al. Biochem Biophys Res Commun 2005 335 667 675 10.1016/j.bbrc.2005.07.128 16099433 (Pubitemid 41188251)
10. A Brg1 null mutation in the mouse reveals functional differences among mammalian SWI/SNF complexes. S Bultman, et al. Mol Cell 2000 6 1287 1295 10.1016/S1097-2765(00)00127-1 11163203 (Pubitemid 32045922)
11. The murine SNF5/INI1 chromatin remodeling factor is essential for embryonic development and tumor suppression. A Klochendler-Yeivin, et al. EMBO Rep 2000 1 500 506 11263494
12. The high-mobility-group box protein SSRP1/T160 is essential for cell viability in day 3.5 mouse embryos. S Cao, et al. Mol Cell Biol 2003 23 5301 5307 10.1128/MCB.23.15.5301-5307.2003 12861016 (Pubitemid 36950885)
13. The ISWI ATPase Snf2h is required for early mouse development. T Stopka, AI Skoultchi, Proc Natl Acad Sci USA 2003 100 14097 14102 10.1073/pnas. 2336105100 14617767 (Pubitemid 37499197)
14. In vivo localization of DNA sequences and visualization of large-scale chromatin organization using lac operator/repressor recognition. CC Robinett, et al. J Cell Biol 1996 135 1685 1700 10.1083/jcb.135.6.1685 8991083 (Pubitemid 27036433)
15. Interphase chromosomes undergo constrained diffusional motion in living cells. WF Marshall, et al. Curr Biol 1997 7 930 939 10.1016/S0960-9822(06)00412- X 9382846 (Pubitemid 28017070)
16. Chromatin motion is constrained by association with nuclear compartments in human cells. JR Chubb, S Boyle, P Perry, WA Bickmore, Current biology: CB 2002 12 439 445 10.1016/S0960-9822(02)00695-4 11909528 (Pubitemid 34248889)
17. Chromatin dynamics in interphase cells revealed by tracking in a two-photon excitation microscope. V Levi, Q Ruan, M Plutz, AS Belmont, E Gratton, Biophys J 2005 89 4275 4285 10.1529/biophysj.105.066670 16150965 (Pubitemid 41725646)
18. The impact of mitotic versus interphase chromatin architecture on the molecular flow of EGFP by pair correlation analysis. E Hinde, et al. Biophys J 2011 100 1829 1836 10.1016/j.bpj.2011.02.024 21463597
19. In vivo pair correlation analysis of EGFP intranuclear diffusion reveals DNA-dependent molecular flow. E Hinde, F Cardarelli, MA Digman, E Gratton, Proc Natl Acad Sci USA. Proceedings of the National Academy of Sciences of the United States of America 2010 107 16560 16565
20. Changes in chromatin compaction during the cell cycle revealed by micrometer-scale measurement of molecular flow in the nucleus. E Hinde, F Cardarelli, MA Digman, E Gratton, Biophys J 2012 102 691 697 10.1016/j.bpj.2011.11.4026 22325293
21. Phasor approach to fluorescence lifetime microscopy distinguishes different metabolic states of germ cells in a live tissue. C Stringari, et al. Proc Natl Acad Sci USA 2011 108 13582 13587 10.1073/pnas.1108161108 21808026
22. Connecting Threads: epigenetics and metabolism. S Katada, A Imhof, P Sassone-Corsi, Cell 2012 148 24 28 10.1016/j.cell.2012.01.001 22265398
23. Correlation between histone lysine methylation and developmental changes at the chicken beta-globin locus. MD Litt, M Simpson, M Gaszner, CD Allis, G Felsenfeld, Science 2001 293 2453 2455 10.1126/science.1064413 11498546 (Pubitemid 32917326)
24. Alteration of nucleosome structure as a mechanism of transcriptional regulation. JL Workman, RE Kingston, Annu Rev Biochem 1998 67 545 579 10.1146/annurev.biochem.67.1.545 9759497 (Pubitemid 28411138)
25. The physics of chromatin. H Schiessel, J Phys Condens Matter 2003 15 699 R774 10.1088/0953-8984/15/19/203
26. Structure, dynamics, and function of chromatin in vitro. J Widom, Annu Rev Biophys Biomol Struct 1998 27 285 327 10.1146/annurev.biophys.27.1.285 9646870 (Pubitemid 28286017)
27. Mechanisms for ATP-dependent chromatin remodeling. A Flaus, T Owen-Hughes, Curr Opin Genet Dev 2001 11 148 154 10.1016/S0959-437X(00)00172-6 11250137 (Pubitemid 32209198)
28. Twenty-five years of the nucleosome, fundamental particle of the eukaryote chromosome. RD Kornberg, Y Lorch, Cell 1999 98 285 294 10.1016/S0092-8674(00)81958-3 10458604 (Pubitemid 29380564)
29. In vivo study of HIV-1 Tat arginine-rich motif unveils its transport properties. F Cardarelli, M Serresi, R Bizzarri, M Giacca, F Beltram, Mol Ther 2007 15 1313 1322 10.1038/sj.mt.6300172 17505482 (Pubitemid 46965328)
30. Cardiomyocytes derived from human embryonic stem cells in pro-survival factors enhance function of infarcted rat hearts. MA Laflamme, et al. Nat Biotechnol 2007 25 1015 1024 10.1038/nbt1327 17721512 (Pubitemid 47517637)
31. In vivo imaging of single-molecule translocation through nuclear pore complexes by pair correlation functions. F Cardarelli, E Gratton, PLoS One 2010 5
32. Imaging barriers to diffusion by pair correlation functions. MA Digman, E Gratton, Biophys J 2009 97 665 73 10.1016/j.bpj.2009.04.048 19619481
33. The phasor approach to fluorescence lifetime imaging analysis. MA Digman, VR Caiolfa, M Zamai, E Gratton, Biophys J 2008 94 2 14 L16 10.1529/biophysj. 107.120154 17981902