-
1
-
-
34548446433
-
Sarcomas: Genetics, signalling, and cellular origins. Part 1: The fellowship of TET
-
Riggi N, Cironi L, Suva ML, Stamenkovic I. Sarcomas: genetics, signalling, and cellular origins. Part 1: The fellowship of TET. J Pathol. 2007;213(1):4-20.
-
(2007)
J Pathol
, vol.213
, Issue.1
, pp. 4-20
-
-
Riggi, N.1
Cironi, L.2
Suva, M.L.3
Stamenkovic, I.4
-
2
-
-
0027362619
-
The Ewing's sarcoma EWS/FLI-1 fusion gene encodes a more potent transcriptional activator and is a more powerful transforming gene than FLI-1
-
May WA, et al. The Ewing's sarcoma EWS/FLI-1 fusion gene encodes a more potent transcriptional activator and is a more powerful transforming gene than FLI-1. Mol Cell Biol. 1993;13(12):7393-7398.
-
(1993)
Mol Cell Biol
, vol.13
, Issue.12
, pp. 7393-7398
-
-
May, W.A.1
-
3
-
-
0027970712
-
A novel effector domain from the RNA-binding protein TLS or EWS is required for oncogenic transformation by CHOP
-
Zinszner H, Albalat R, Ron D. A novel effector domain from the RNA-binding protein TLS or EWS is required for oncogenic transformation by CHOP. Genes Dev. 1994;8(21):2513-2526.
-
(1994)
Genes Dev
, vol.8
, Issue.21
, pp. 2513-2526
-
-
Zinszner, H.1
Albalat, R.2
Ron, D.3
-
4
-
-
0041672262
-
Functional analysis of the EWS/ETS target gene uridine phosphorylase
-
Deneen B, Hamidi H, Denny CT. Functional analysis of the EWS/ETS target gene uridine phosphorylase. Cancer Res. 2003;63(14):4268-4274.
-
(2003)
Cancer Res
, vol.63
, Issue.14
, pp. 4268-4274
-
-
Deneen, B.1
Hamidi, H.2
Denny, C.T.3
-
5
-
-
0030446259
-
EAT-2 is a novel SH2 domain containing protein that is up regulated by Ewing's sarcoma EWS/FLI1 fusion gene
-
Thompson AD, et al. EAT-2 is a novel SH2 domain containing protein that is up regulated by Ewing's sarcoma EWS/FLI1 fusion gene. Oncogene. 1996;13(12):2649-2658.
-
(1996)
Oncogene
, vol.13
, Issue.12
, pp. 2649-2658
-
-
Thompson, A.D.1
-
6
-
-
33845425959
-
Expression of EWS-ETS fusions in NIH3T3 cells reveals significant differences to Ewing's sarcoma
-
Braunreiter CL, Hancock JD, Coffin CM, Boucher KM, Lessnick SL. Expression of EWS-ETS fusions in NIH3T3 cells reveals significant differences to Ewing's sarcoma. Cell Cycle. 2006;5(23):2753-2759.
-
(2006)
Cell Cycle
, vol.5
, Issue.23
, pp. 2753-2759
-
-
Braunreiter, C.L.1
Hancock, J.D.2
Coffin, C.M.3
Boucher, K.M.4
Lessnick, S.L.5
-
7
-
-
33845344030
-
NR0B1 is required for the oncogenic phenotype mediated by EWS/FLI in Ewing's sarcoma
-
Kinsey M, Smith R, Lessnick SL. NR0B1 is required for the oncogenic phenotype mediated by EWS/FLI in Ewing's sarcoma. Mol Cancer Res. 2006;4(11):851-859.
-
(2006)
Mol Cancer Res
, vol.4
, Issue.11
, pp. 851-859
-
-
Kinsey, M.1
Smith, R.2
Lessnick, S.L.3
-
8
-
-
33646366123
-
Expression profiling of EWS/ FLI identifies NKX2.2 as a critical target gene in Ewing's sarcoma
-
Smith R, et al. Expression profiling of EWS/ FLI identifies NKX2.2 as a critical target gene in Ewing's sarcoma. Cancer Cell. 2006;9(5):405-416.
-
(2006)
Cancer Cell
, vol.9
, Issue.5
, pp. 405-416
-
-
Smith, R.1
-
9
-
-
65549090018
-
A molecular function map of Ewing's sarcoma
-
Kauer M, et al. A molecular function map of Ewing's sarcoma. PLoS One. 2009;4(4):e5415.
-
(2009)
PLoS One
, vol.4
, Issue.4
, pp. e5415
-
-
Kauer, M.1
-
10
-
-
34247570879
-
Mesenchymal stem cell features of ewing tumors
-
Tirode F, Laud-Duval K, Prieur A, Delorme B, Charbord P, Delattre O. Mesenchymal stem cell features of ewing tumors. Cancer Cell. 2007;11(5):421-429.
-
(2007)
Cancer Cell
, vol.11
, Issue.5
, pp. 421-429
-
-
Tirode, F.1
Laud-Duval, K.2
Prieur, A.3
Delorme, B.4
Charbord, P.5
Delattre, O.6
-
11
-
-
42049089299
-
EWS-FLI-1 expression triggers a Ewing's sarcoma initiation program in primary human mesenchymal stem cells
-
Riggi N, et al. EWS-FLI-1 expression triggers a Ewing's sarcoma initiation program in primary human mesenchymal stem cells. Cancer Res. 2008;68(7):2176-2185.
-
(2008)
Cancer Res
, vol.68
, Issue.7
, pp. 2176-2185
-
-
Riggi, N.1
-
12
-
-
65249101694
-
EZH2 is a mediator of EWS/FLI1 driven tumor growth and metastasis blocking endothelial and neuro-ectodermal differentiation
-
Richter GH, et al. EZH2 is a mediator of EWS/FLI1 driven tumor growth and metastasis blocking endothelial and neuro-ectodermal differentiation. Proc Natl Acad Sci U S A. 2009;106(13):5324-5329.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, Issue.13
, pp. 5324-5329
-
-
Richter, G.H.1
-
13
-
-
49949085240
-
IGF1 is a common target gene of Ewing's sarcoma fusion proteins in mesenchymal progenitor cells
-
Cironi L, et al. IGF1 is a common target gene of Ewing's sarcoma fusion proteins in mesenchymal progenitor cells. PLoS One. 2008;3(7):e2634.
-
(2008)
PLoS One
, vol.3
, Issue.7
, pp. e2634
-
-
Cironi, L.1
-
14
-
-
77951785861
-
EWS-FLI-1 modulates miRNA145 and SOX2 expression to initiate mesenchymal stem cell reprogramming toward Ewing sarcoma cancer stem cells
-
Riggi N, et al. EWS-FLI-1 modulates miRNA145 and SOX2 expression to initiate mesenchymal stem cell reprogramming toward Ewing sarcoma cancer stem cells. Genes Dev. 2010;24(9):916-932.
-
(2010)
Genes Dev
, vol.24
, Issue.9
, pp. 916-932
-
-
Riggi, N.1
-
15
-
-
84886088733
-
Mechanism and relevance of EWS/FLI-mediated transcriptional repression in Ewing sarcoma
-
Sankar S, et al. Mechanism and relevance of EWS/FLI-mediated transcriptional repression in Ewing sarcoma. Oncogene. 2013;32(42):5089-5100.
-
(2013)
Oncogene
, vol.32
, Issue.42
, pp. 5089-5100
-
-
Sankar, S.1
-
16
-
-
44849085869
-
EWS/FLI mediates transcriptional repression via NKX2.2 during oncogenic transformation in Ewing's sarcoma
-
Owen LA, Kowalewski AA, Lessnick SL. EWS/FLI mediates transcriptional repression via NKX2.2 during oncogenic transformation in Ewing's sarcoma. PLoS One. 2008;3(4):e1965.
-
(2008)
PLoS One
, vol.3
, Issue.4
, pp. e1965
-
-
Owen, L.A.1
Kowalewski, A.A.2
Lessnick, S.L.3
-
17
-
-
71549134306
-
EWS/FLI and its downstream target NR0B1 interact directly to modulate transcription and oncogenesis in Ewing's sarcoma
-
Kinsey M, Smith R, Iyer AK, McCabe ER, Lessnick SL. EWS/FLI and its downstream target NR0B1 interact directly to modulate transcription and oncogenesis in Ewing's sarcoma. Cancer Res. 2009;69(23):9047-9055.
-
(2009)
Cancer Res
, vol.69
, Issue.23
, pp. 9047-9055
-
-
Kinsey, M.1
Smith, R.2
Iyer, A.K.3
McCabe, E.R.4
Lessnick, S.L.5
-
18
-
-
84875106495
-
BCL11B is up-regulated by EWS/FLI and contributes to the transformed phenotype in Ewing sarcoma
-
Wiles ET, Lui-Sargent B, Bell R, Lessnick SL. BCL11B is up-regulated by EWS/FLI and contributes to the transformed phenotype in Ewing sarcoma. PLoS One. 2013;8(3):e59369.
-
(2013)
PLoS One
, vol.8
, Issue.3
, pp. e59369
-
-
Wiles, E.T.1
Lui-Sargent, B.2
Bell, R.3
Lessnick, S.L.4
-
19
-
-
34249088350
-
Genome-wide transcription and the implications for genomic organization
-
Kapranov P, Willingham AT, Gingeras TR. Genome-wide transcription and the implications for genomic organization. Nat Rev Genet. 2007;8(6):413-423.
-
(2007)
Nat Rev Genet
, vol.8
, Issue.6
, pp. 413-423
-
-
Kapranov, P.1
Willingham, A.T.2
Gingeras, T.R.3
-
20
-
-
60349120914
-
Long non-coding RNAs: Insights into functions
-
Mercer TR, Dinger ME, Mattick JS. Long non-coding RNAs: insights into functions. Nat Rev Genet. 2009;10(3):155-159.
-
(2009)
Nat Rev Genet
, vol.10
, Issue.3
, pp. 155-159
-
-
Mercer, T.R.1
Dinger, M.E.2
Mattick, J.S.3
-
21
-
-
80052978224
-
Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses
-
Cabili MN, et al. Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses. Genes Dev. 2011;25(18):1915-1927.
-
(2011)
Genes Dev
, vol.25
, Issue.18
, pp. 1915-1927
-
-
Cabili, M.N.1
-
22
-
-
84861202972
-
The long non-coding RNAs: A New (P)layer in the "Dark Matter"
-
Derrien T, Guigo R, Johnson R. The long non-coding RNAs: A New (P)layer in the "Dark Matter". Front Genet. 2011;2:107.
-
(2011)
Front Genet
, vol.2
, pp. 107
-
-
Derrien, T.1
Guigo, R.2
Johnson, R.3
-
23
-
-
80053045739
-
Molecular mechanisms of long noncoding RNAs
-
Wang KC, Chang HY. Molecular mechanisms of long noncoding RNAs. Mol Cell. 2011;43(6):904-914.
-
(2011)
Mol Cell
, vol.43
, Issue.6
, pp. 904-914
-
-
Wang, K.C.1
Chang, H.Y.2
-
24
-
-
0025829449
-
Characterization of a murine gene expressed from the inactive X chromosome
-
Borsani G, et al. Characterization of a murine gene expressed from the inactive X chromosome. Nature. 1991;351(6324):325-329.
-
(1991)
Nature
, vol.351
, Issue.6324
, pp. 325-329
-
-
Borsani, G.1
-
25
-
-
0032932528
-
Tsix, a gene antisense to Xist at the X-inactivation centre
-
Lee JT, Davidow LS, Warshawsky D. Tsix, a gene antisense to Xist at the X-inactivation centre. Nat Genet. 1999;21(4):400-404.
-
(1999)
Nat Genet
, vol.21
, Issue.4
, pp. 400-404
-
-
Lee, J.T.1
Davidow, L.S.2
Warshawsky, D.3
-
26
-
-
62549117314
-
An architectural role for a nuclear noncoding RNA: NEAT1 RNA is essential for the structure of paraspeckles
-
Clemson CM, et al. An architectural role for a nuclear noncoding RNA: NEAT1 RNA is essential for the structure of paraspeckles. Mol Cell. 2009;33(6):717-726.
-
(2009)
Mol Cell
, vol.33
, Issue.6
, pp. 717-726
-
-
Clemson, C.M.1
-
27
-
-
77956927823
-
The nuclear-retained noncoding RNA MALAT1 regulates alternative splicing by modulating SR splicing factor phosphorylation
-
Tripathi V, et al. The nuclear-retained noncoding RNA MALAT1 regulates alternative splicing by modulating SR splicing factor phosphorylation. Mol Cell. 2010;39(6):925-938.
-
(2010)
Mol Cell
, vol.39
, Issue.6
, pp. 925-938
-
-
Tripathi, V.1
-
28
-
-
46649093597
-
Induced ncRNAs allosterically modify RNA-binding proteins in cis to inhibit transcription
-
Wang X, et al. Induced ncRNAs allosterically modify RNA-binding proteins in cis to inhibit transcription. Nature. 2008;454(7200):126-130.
-
(2008)
Nature
, vol.454
, Issue.7200
, pp. 126-130
-
-
Wang, X.1
-
29
-
-
79953748673
-
A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression
-
Wang KC, et al. A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression. Nature. 2011;472(7341):120-124.
-
(2011)
Nature
, vol.472
, Issue.7341
, pp. 120-124
-
-
Wang, K.C.1
-
30
-
-
34250729138
-
Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs
-
Rinn JL, et al. Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs. Cell. 2007;129(7):1311-1323.
-
(2007)
Cell
, vol.129
, Issue.7
, pp. 1311-1323
-
-
Rinn, J.L.1
-
31
-
-
35348921682
-
Self-renewing osteoprogenitors in bone marrow sinusoids can organize a hematopoietic microenvironment
-
Sacchetti B, et al. Self-renewing osteoprogenitors in bone marrow sinusoids can organize a hematopoietic microenvironment. Cell. 2007;131(2):324-336.
-
(2007)
Cell
, vol.131
, Issue.2
, pp. 324-336
-
-
Sacchetti, B.1
-
32
-
-
41549139755
-
Mesenchymal stem cells: Revisiting history, concepts, and assays
-
Bianco P, Robey PG, Simmons PJ. Mesenchymal stem cells: revisiting history, concepts, and assays. Cell Stem Cell. 2008;2(4):313-319.
-
(2008)
Cell Stem Cell
, vol.2
, Issue.4
, pp. 313-319
-
-
Bianco, P.1
Robey, P.G.2
Simmons, P.J.3
-
33
-
-
0037427070
-
Upregulation of Id2, an oncogenic helix-loop-helix protein, is mediated by the chimeric EWS/ets protein in Ewing sarcoma
-
Fukuma M, Okita H, Hata J, Umezawa A. Upregulation of Id2, an oncogenic helix-loop-helix protein, is mediated by the chimeric EWS/ets protein in Ewing sarcoma. Oncogene. 2003;22(1):1-9.
-
(2003)
Oncogene
, vol.22
, Issue.1
, pp. 1-9
-
-
Fukuma, M.1
Okita, H.2
Hata, J.3
Umezawa, A.4
-
34
-
-
67649862045
-
Stable interference of EWS-FLI1 in an Ewing sarcoma cell line impairs IGF-1/IGF-1R signalling and reveals TOPK as a new target
-
Herrero-Martin D, et al. Stable interference of EWS-FLI1 in an Ewing sarcoma cell line impairs IGF-1/IGF-1R signalling and reveals TOPK as a new target. Br J Cancer. 2009;101(1):80-90.
-
(2009)
Br J Cancer
, vol.101
, Issue.1
, pp. 80-90
-
-
Herrero-Martin, D.1
-
35
-
-
33750570283
-
Caveolin-1 (CAV1) is a target of EWS/FLI-1 and a key determinant of the oncogenic phenotype and tumorigenicity of Ewing's sarcoma cells
-
Tirado OM, et al. Caveolin-1 (CAV1) is a target of EWS/FLI-1 and a key determinant of the oncogenic phenotype and tumorigenicity of Ewing's sarcoma cells. Cancer Res. 2006;66(20):9937-9947.
-
(2006)
Cancer Res
, vol.66
, Issue.20
, pp. 9937-9947
-
-
Tirado, O.M.1
-
36
-
-
65549117869
-
Overcoming resistance to conventional drugs in Ewing sarcoma and identification of molecular predictors of outcome
-
Scotlandi K, et al. Overcoming resistance to conventional drugs in Ewing sarcoma and identification of molecular predictors of outcome. J Clin Oncol. 2009;27(13):2209-2216.
-
(2009)
J Clin Oncol
, vol.27
, Issue.13
, pp. 2209-2216
-
-
Scotlandi, K.1
-
37
-
-
34547582418
-
CPC: Assess the protein-coding potential of transcripts using sequence features and support vector machine
-
Kong L, et al. CPC: assess the protein-coding potential of transcripts using sequence features and support vector machine. Nucleic Acids Res. 2007;35(Web Server issue):W345-W349.
-
(2007)
Nucleic Acids Res
, vol.35
, Issue.WEB SERVER ISSUE
, pp. W345-W349
-
-
Kong, L.1
-
38
-
-
84865319844
-
Transcriptional profiling of lncRNAs and novel transcribed regions across a diverse panel of archived human cancers
-
Brunner AL, et al. Transcriptional profiling of lncRNAs and novel transcribed regions across a diverse panel of archived human cancers. Genome Biol. 2012;13(8):R75.
-
(2012)
Genome Biol
, vol.13
, Issue.8
, pp. R75
-
-
Brunner, A.L.1
-
39
-
-
84863011366
-
Tumor-specific retargeting of an oncogenic transcription factor chimera results in dysregulation of chromatin and transcription
-
Patel M, et al. Tumor-specific retargeting of an oncogenic transcription factor chimera results in dysregulation of chromatin and transcription. Genome Res. 2012;22(2):259-270.
-
(2012)
Genome Res
, vol.22
, Issue.2
, pp. 259-270
-
-
Patel, M.1
-
40
-
-
84861904178
-
Genome regulation by long noncoding RNAs
-
Rinn JL, Chang HY. Genome regulation by long noncoding RNAs. Annu Rev Biochem. 2012;81:145-166.
-
(2012)
Annu Rev Biochem
, vol.81
, pp. 145-166
-
-
Rinn, J.L.1
Chang, H.Y.2
-
41
-
-
84908447818
-
The Genomic Landscape of Pediatric Ewing Sarcoma
-
published online ahead of print September 3, 2014
-
Crompton BD, et al. The Genomic Landscape of Pediatric Ewing Sarcoma [published online ahead of print September 3, 2014]. Cancer Discov. doi:10.1158/2159-8290.CD-13-1037.
-
Cancer Discov
-
-
Crompton, B.D.1
-
42
-
-
84886088733
-
Mechanism relevance of EWS/FLI-mediated transcriptional repression in Ewing sarcoma
-
Sankar S, et al. Mechanism relevance of EWS/FLI-mediated transcriptional repression in Ewing sarcoma. Oncogene. 2012;32(42):5089-5100.
-
(2012)
Oncogene
, vol.32
, Issue.42
, pp. 5089-5100
-
-
Sankar, S.1
-
43
-
-
61449172037
-
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
-
Huang da W, Sherman BT, Lempicki RA. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc. 2009;4(1):44-57.
-
(2009)
Nat Protoc
, vol.4
, Issue.1
, pp. 44-57
-
-
Huang Da, W.1
Sherman, B.T.2
Lempicki, R.A.3
-
44
-
-
34547589578
-
DAVID Bioinformatics Resources: Expanded annotation database and novel algorithms to better extract biology from large gene lists
-
Huang da W, et al. DAVID Bioinformatics Resources: expanded annotation database and novel algorithms to better extract biology from large gene lists. Nucleic Acids Res. 2007;35(Web Server issue):W169-W175.
-
(2007)
Nucleic Acids Res
, vol.35
, Issue.WEB SERVER ISSUE
, pp. W169-W175
-
-
Huang Da, W.1
-
45
-
-
84869047676
-
Identification of proteins binding coding and non-coding human RNAs using protein microarrays
-
Siprashvili Z, et al. Identification of proteins binding coding and non-coding human RNAs using protein microarrays. BMC Ge;nomics. 2012;13(1):633.
-
(2012)
BMC Ge;nomics
, vol.13
, Issue.1
, pp. 633
-
-
Siprashvili, Z.1
-
46
-
-
77955323879
-
A large intergenic noncoding RNA induced by p53 mediates global gene repression in the p53 response
-
Huarte M, et al. A large intergenic noncoding RNA induced by p53 mediates global gene repression in the p53 response. Cell. 2010;142(3):409-419.
-
(2010)
Cell
, vol.142
, Issue.3
, pp. 409-419
-
-
Huarte, M.1
-
47
-
-
79951495822
-
lncRNAs transactivate STAU1-mediated mRNA decay by duplexing with 3′ UTRs via Alu elements
-
Gong C, Maquat LE. lncRNAs transactivate STAU1-mediated mRNA decay by duplexing with 3′ UTRs via Alu elements. Nature. 2011;470(7333):284-288.
-
(2011)
Nature
, vol.470
, Issue.7333
, pp. 284-288
-
-
Gong, C.1
Maquat, L.E.2
-
48
-
-
84865757142
-
Landscape of transcription in human cells
-
Djebali S, et al. Landscape of transcription in human cells. Nature. 2012;489(7414):101-108.
-
(2012)
Nature
, vol.489
, Issue.7414
, pp. 101-108
-
-
Djebali, S.1
-
49
-
-
84865727393
-
The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression
-
Derrien T, et al. The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression. Genome Res. 2012;22(9):1775-1789.
-
(2012)
Genome Res
, vol.22
, Issue.9
, pp. 1775-1789
-
-
Derrien, T.1
-
50
-
-
56549111129
-
The Air noncoding RNA epigenetically silences transcription by targeting G9a to chromatin
-
Nagano T, et al. The Air noncoding RNA epigenetically silences transcription by targeting G9a to chromatin. Science. 2008;322(5908):1717-1720.
-
(2008)
Science
, vol.322
, Issue.5908
, pp. 1717-1720
-
-
Nagano, T.1
-
51
-
-
79961202865
-
Transcriptome sequencing across a prostate cancer cohort identifies PCAT-1, an unannotated lincRNA implicated in disease progression
-
Prensner JR, et al. Transcriptome sequencing across a prostate cancer cohort identifies PCAT-1, an unannotated lincRNA implicated in disease progression. Nat Biotechnol. 2011;29(8):742-749.
-
(2011)
Nat Biotechnol
, vol.29
, Issue.8
, pp. 742-749
-
-
Prensner, J.R.1
-
52
-
-
84883132550
-
lncRNA-dependent mechanisms of androgen-receptor-regulated gene activation programs
-
Yang L, et al. lncRNA-dependent mechanisms of androgen-receptor-regulated gene activation programs. Nature. 2013;500(7464):598-602.
-
(2013)
Nature
, vol.500
, Issue.7464
, pp. 598-602
-
-
Yang, L.1
-
53
-
-
84887122461
-
The long noncoding RNA SChLAP1 promotes aggressive prostate cancer and antagonizes the SWI/SNF complex
-
Prensner JR, et al. The long noncoding RNA SChLAP1 promotes aggressive prostate cancer and antagonizes the SWI/SNF complex. Nat Genet. 2013;45(11):1392-1398.
-
(2013)
Nat Genet
, vol.45
, Issue.11
, pp. 1392-1398
-
-
Prensner, J.R.1
-
54
-
-
84861881510
-
BRAFV600E remodels the melanocyte transcriptome and induces BANCR to regulate melanoma cell migration
-
Flockhart RJ, et al. BRAFV600E remodels the melanocyte transcriptome and induces BANCR to regulate melanoma cell migration. Genome Res. 2012;22(6):1006-1014.
-
(2012)
Genome Res
, vol.22
, Issue.6
, pp. 1006-1014
-
-
Flockhart, R.J.1
-
55
-
-
77954572735
-
Long noncoding RNA as modular scaffold of histone modification complexes
-
Tsai MC, et al. Long noncoding RNA as modular scaffold of histone modification complexes. Science. 2010;329(5992):689-693.
-
(2010)
Science
, vol.329
, Issue.5992
, pp. 689-693
-
-
Tsai, M.C.1
-
56
-
-
77951118936
-
Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis
-
Gupta RA, et al. Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis. Nature. 2010;464(7291):1071-1076.
-
(2010)
Nature
, vol.464
, Issue.7291
, pp. 1071-1076
-
-
Gupta, R.A.1
-
57
-
-
63349090507
-
The oncogenic EWS-FLI1 protein binds in vivo GGAA microsatellite sequences with potential transcriptional activation function
-
Guillon N, Tirode F, Boeva V, Zynovyev A, Barillot E, Delattre O. The oncogenic EWS-FLI1 protein binds in vivo GGAA microsatellite sequences with potential transcriptional activation function. PLoS One. 2009;4(3):e4932.
-
(2009)
PLoS One
, vol.4
, Issue.3
, pp. e4932
-
-
Guillon, N.1
Tirode, F.2
Boeva, V.3
Zynovyev, A.4
Barillot, E.5
Delattre, O.6
-
58
-
-
48249127913
-
Microsatellites as EWS/FLI response elements in Ewing's sarcoma
-
Gangwal K, et al. Microsatellites as EWS/FLI response elements in Ewing's sarcoma. Proc Natl Acad Sci U S A. 2008;105(29):10149-10154.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, Issue.29
, pp. 10149-10154
-
-
Gangwal, K.1
-
59
-
-
84862128379
-
A TARBP2-dependent miRNA expression profile underlies cancer stem cell properties and provides candidate therapeutic reagents in Ewing sarcoma
-
De Vito C, et al. A TARBP2-dependent miRNA expression profile underlies cancer stem cell properties and provides candidate therapeutic reagents in Ewing sarcoma. Cancer Cell. 2012;21(6):807-821.
-
(2012)
Cancer Cell
, vol.21
, Issue.6
, pp. 807-821
-
-
De Vito, C.1
-
60
-
-
27144528261
-
BCL11B functionally associates with the NuRD complex in T lymphocytes to repress targeted promoter
-
Cismasiu VB, Adamo K, Gecewicz J, Duque J, Lin Q, Avram D. BCL11B functionally associates with the NuRD complex in T lymphocytes to repress targeted promoter. Oncogene. 2005;24(45):6753-6764.
-
(2005)
Oncogene
, vol.24
, Issue.45
, pp. 6753-6764
-
-
Cismasiu, V.B.1
Adamo, K.2
Gecewicz, J.3
Duque, J.4
Lin, Q.5
Avram, D.6
-
61
-
-
2942623743
-
hnRNP K: One protein multiple processes
-
Bomsztyk K, Denisenko O, Ostrowski J. hnRNP K: one protein multiple processes. Bioessays. 2004;26(6):629-638.
-
(2004)
Bioessays
, vol.26
, Issue.6
, pp. 629-638
-
-
Bomsztyk, K.1
Denisenko, O.2
Ostrowski, J.3
-
62
-
-
28944446040
-
hnRNP K: An HDM2 target and transcriptional coactivator of p53 in response to DNA damage
-
Moumen A, Masterson P, O'Connor MJ, Jackson SP. hnRNP K: an HDM2 target and transcriptional coactivator of p53 in response to DNA damage. Cell. 2005;123(6):1065-1078.
-
(2005)
Cell
, vol.123
, Issue.6
, pp. 1065-1078
-
-
Moumen, A.1
Masterson, P.2
O'Connor, M.J.3
Jackson, S.P.4
-
63
-
-
12844269244
-
Heterogeneous nuclear ribonucleoprotein K represses transcription from a cytosine/thymidine-rich element in the osteocalcin promoter
-
Stains JP, Lecanda F, Towler DA, Civitelli R. Heterogeneous nuclear ribonucleoprotein K represses transcription from a cytosine/thymidine-rich element in the osteocalcin promoter. Biochem J. 2005;385(pt 2):613-623.
-
(2005)
Biochem J
, vol.385
, pp. 613-623
-
-
Stains, J.P.1
Lecanda, F.2
Towler, D.A.3
Civitelli, R.4
-
64
-
-
0030763497
-
Single-colony derived strains of human marrow stromal fibroblasts form bone after transplantation in vivo
-
Kuznetsov SA, et al. Single-colony derived strains of human marrow stromal fibroblasts form bone after transplantation in vivo. J Bone Miner Res. 1997;12(9):1335-1347.
-
(1997)
J Bone Miner Res
, vol.12
, Issue.9
, pp. 1335-1347
-
-
Kuznetsov, S.A.1
-
65
-
-
34548052223
-
EWS/FLI-1 oncoprotein subtypes impose different requirements for transformation and metastatic activity in a murine model
-
Gonzalez I, Vicent S, de Alava E, Lecanda F. EWS/FLI-1 oncoprotein subtypes impose different requirements for transformation and metastatic activity in a murine model. J Mol Med (Berl). 2007;85(9):1015-1029.
-
(2007)
J Mol Med (Berl)
, vol.85
, Issue.9
, pp. 1015-1029
-
-
Gonzalez, I.1
Vicent, S.2
De Alava, E.3
Lecanda, F.4
-
66
-
-
0142121516
-
Exploration, normalization, and summaries of high density oligonucleotide array probe level data
-
Irizarry RA, et al. Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics. 2003;4(2):249-264.
-
(2003)
Biostatistics
, vol.4
, Issue.2
, pp. 249-264
-
-
Irizarry, R.A.1
-
67
-
-
0035942271
-
Significance analysis of microarrays applied to the ionizing radiation response
-
Tusher VG, Tibshirani R, Chu G. Significance analysis of microarrays applied to the ionizing radiation response. Proc Natl Acad Sci U S A. 2001;98(9):5116-5121.
-
(2001)
Proc Natl Acad Sci U S A
, vol.98
, Issue.9
, pp. 5116-5121
-
-
Tusher, V.G.1
Tibshirani, R.2
Chu, G.3
-
68
-
-
0032441150
-
Cluster analysis and display of genome-wide expression patterns
-
Eisen MB, Spellman PT, Brown PO, Botstein D. Cluster analysis and display of genome-wide expression patterns. Proc Natl Acad Sci U S A. 1998;95(25):14863-14868.
-
(1998)
Proc Natl Acad Sci U S A
, vol.95
, Issue.25
, pp. 14863-14868
-
-
Eisen, M.B.1
Spellman, P.T.2
Brown, P.O.3
Botstein, D.4
-
69
-
-
84865319844
-
Transcriptional profiling of lncRNAs and novel transcribed regions across a diverse panel of archived human cancers
-
Brunner AL, et al. Transcriptional profiling of lncRNAs and novel transcribed regions across a diverse panel of archived human cancers. Genome Biol. 2012;13(8):R75.
-
(2012)
Genome Biol
, vol.13
, Issue.8
, pp. R75
-
-
Brunner, A.L.1
-
70
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Li H, Durbin R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics. 2009;25(14):1754-1760.
-
(2009)
Bioinformatics
, vol.25
, Issue.14
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
71
-
-
80052978224
-
Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses
-
Cabili MN, et al. Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses. Genes Dev. 2011;25(18):1915-1927.
-
(2011)
Genes Dev
, vol.25
, Issue.18
, pp. 1915-1927
-
-
Cabili, M.N.1
-
72
-
-
84874312025
-
NGSUtils: A software suite for analyzing and manipulating next-generation sequencing datasets
-
Breese MR, Liu Y. NGSUtils: a software suite for analyzing and manipulating next-generation sequencing datasets. Bioinformatics. 2013;29(4):494-496.
-
(2013)
Bioinformatics
, vol.29
, Issue.4
, pp. 494-496
-
-
Breese, M.R.1
Liu, Y.2
-
73
-
-
77958471357
-
Differential expression analysis for sequence count data
-
Anders S, Huber W. Differential expression analysis for sequence count data. Genome Biol. 2010;11(10):R106.
-
(2010)
Genome Biol
, vol.11
, Issue.10
, pp. R106
-
-
Anders, S.1
Huber, W.2
-
74
-
-
77649314169
-
3′-end sequencing for expression quantification (3SEQ) from archival tumor samples
-
Beck AH, et al. 3′-end sequencing for expression quantification (3SEQ) from archival tumor samples. PLoS One. 2010;5(1):e8768.
-
(2010)
PLoS One
, vol.5
, Issue.1
, pp. e8768
-
-
Beck, A.H.1
-
75
-
-
84871809302
-
STAR: Ultrafast universal RNA-seq aligner
-
Dobin A, et al. STAR: ultrafast universal RNA-seq aligner. Bioinformatics. 2013;29(1):15-21.
-
(2013)
Bioinformatics
, vol.29
, Issue.1
, pp. 15-21
-
-
Dobin, A.1
-
76
-
-
75249087100
-
edgeR: A Bioconductor package for differential expression analysis of digital gene expression data
-
Robinson MD, McCarthy DJ, Smyth GK. edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics. 2010;26(1):139-140.
-
(2010)
Bioinformatics
, vol.26
, Issue.1
, pp. 139-140
-
-
Robinson, M.D.1
McCarthy, D.J.2
Smyth, G.K.3
-
77
-
-
84861743958
-
RNA-SeQC: RNA-seq metrics for quality control and process optimization
-
DeLuca DS, et al. RNA-SeQC: RNA-seq metrics for quality control and process optimization. Bioinformatics. 2012;28(11):1530-1532.
-
(2012)
Bioinformatics
, vol.28
, Issue.11
, pp. 1530-1532
-
-
DeLuca, D.S.1
-
78
-
-
27344435774
-
Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
-
Subramanian A, et al. Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proc Natl Acad Sci U S A. 2005;102(43):15545-15550.
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, Issue.43
, pp. 15545-15550
-
-
Subramanian, A.1
-
79
-
-
38349060190
-
Human multipotent stromal cells undergo sharp transition from division to development in culture
-
Larson BL, Ylostalo J, Prockop DJ. Human multipotent stromal cells undergo sharp transition from division to development in culture. Stem Cells. 2008;26(1):193-201.
-
(2008)
Stem Cells
, vol.26
, Issue.1
, pp. 193-201
-
-
Larson, B.L.1
Ylostalo, J.2
Prockop, D.J.3
-
80
-
-
67649231424
-
Aging and replicative senescence have related effects on human stem and progenitor cells
-
Wagner W, et al. Aging and replicative senescence have related effects on human stem and progenitor cells. PLoS One. 2009;4(6):e5846.
-
(2009)
PLoS One
, vol.4
, Issue.6
, pp. e5846
-
-
Wagner, W.1
|