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Volumn 13, Issue 1, 2012, Pages

Identification of proteins binding coding and non-coding human RNAs using protein microarrays

Author keywords

Microarray; Non coding RNA; P53; Ras; Staufen

Indexed keywords

CCHC ZINC FINGER NUCLEIC ACID BINDING PROTEIN; CODING RNA; PROTEIN P53; RNA; RNA BINDING PROTEIN; STAUFEN 1 PROTEIN; UNCLASSIFIED DRUG; UNTRANSLATED RNA;

EID: 84869047676     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-13-633     Document Type: Article
Times cited : (34)

References (29)
  • 1
    • 67649671961 scopus 로고    scopus 로고
    • Long noncoding RNAs: functional surprises from the RNA world
    • 10.1101/gad.1800909, 3152381, 19571179
    • Wilusz JE, Sunwoo H, Spector DL. Long noncoding RNAs: functional surprises from the RNA world. Genes Dev 2009, 23(13):1494-1504. 10.1101/gad.1800909, 3152381, 19571179.
    • (2009) Genes Dev , vol.23 , Issue.13 , pp. 1494-1504
    • Wilusz, J.E.1    Sunwoo, H.2    Spector, D.L.3
  • 2
    • 1842584883 scopus 로고    scopus 로고
    • RNA regulation: a new genetics?
    • 10.1038/nrg1321, 15131654
    • Mattick JS. RNA regulation: a new genetics?. Nat Rev Genet 2004, 5(4):316-323. 10.1038/nrg1321, 15131654.
    • (2004) Nat Rev Genet , vol.5 , Issue.4 , pp. 316-323
    • Mattick, J.S.1
  • 3
    • 60149099385 scopus 로고    scopus 로고
    • Evolution and functions of long noncoding RNAs
    • 10.1016/j.cell.2009.02.006, 19239885
    • Ponting CP, Oliver PL, Reik W. Evolution and functions of long noncoding RNAs. Cell 2009, 136(4):629-641. 10.1016/j.cell.2009.02.006, 19239885.
    • (2009) Cell , vol.136 , Issue.4 , pp. 629-641
    • Ponting, C.P.1    Oliver, P.L.2    Reik, W.3
  • 4
    • 58249088751 scopus 로고    scopus 로고
    • MicroRNAs: target recognition and regulatory functions
    • 10.1016/j.cell.2009.01.002, 19167326
    • Bartel DP. MicroRNAs: target recognition and regulatory functions. Cell 2009, 136(2):215-233. 10.1016/j.cell.2009.01.002, 19167326.
    • (2009) Cell , vol.136 , Issue.2 , pp. 215-233
    • Bartel, D.P.1
  • 5
    • 0035802386 scopus 로고    scopus 로고
    • Structural and functional features of eukaryotic mRNA untranslated regions
    • Pesole G, Mignone F, Gissi C, Grillo G, Licciulli F, Liuni S. Structural and functional features of eukaryotic mRNA untranslated regions. Gene 2001, 276(1-2):73-81.
    • (2001) Gene , vol.276 , Issue.1-2 , pp. 73-81
    • Pesole, G.1    Mignone, F.2    Gissi, C.3    Grillo, G.4    Licciulli, F.5    Liuni, S.6
  • 6
    • 0036207282 scopus 로고    scopus 로고
    • Untranslated regions of mRNAs
    • REVIEWS0004, 139023, 11897027
    • Mignone F, Gissi C, Liuni S, Pesole G. Untranslated regions of mRNAs. Genome Biol 2002, 3(3):REVIEWS0004. 139023, 11897027.
    • (2002) Genome Biol , vol.3 , Issue.3
    • Mignone, F.1    Gissi, C.2    Liuni, S.3    Pesole, G.4
  • 7
    • 62249133709 scopus 로고    scopus 로고
    • Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals
    • 10.1038/nature07672, 2754849, 19182780
    • Guttman M, Amit I, Garber M, French C, Lin MF, Feldser D, Huarte M, Zuk O, Carey BW, Cassady JP, et al. Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals. Nature 2009, 458(7235):223-227. 10.1038/nature07672, 2754849, 19182780.
    • (2009) Nature , vol.458 , Issue.7235 , pp. 223-227
    • Guttman, M.1    Amit, I.2    Garber, M.3    French, C.4    Lin, M.F.5    Feldser, D.6    Huarte, M.7    Zuk, O.8    Carey, B.W.9    Cassady, J.P.10
  • 9
    • 78751474118 scopus 로고    scopus 로고
    • Non-coding RNAs as regulators of embryogenesis
    • 10.1038/nrg2904, 21245830
    • Pauli A, Rinn JL, Schier AF. Non-coding RNAs as regulators of embryogenesis. Nat Rev Genet 2011, 12(2):136-149. 10.1038/nrg2904, 21245830.
    • (2011) Nat Rev Genet , vol.12 , Issue.2 , pp. 136-149
    • Pauli, A.1    Rinn, J.L.2    Schier, A.F.3
  • 10
    • 34250729138 scopus 로고    scopus 로고
    • Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs
    • 10.1016/j.cell.2007.05.022, 2084369, 17604720
    • Rinn JL, Kertesz M, Wang JK, Squazzo SL, Xu X, Brugmann SA, Goodnough LH, Helms JA, Farnham PJ, Segal E, et al. Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs. Cell 2007, 129(7):1311-1323. 10.1016/j.cell.2007.05.022, 2084369, 17604720.
    • (2007) Cell , vol.129 , Issue.7 , pp. 1311-1323
    • Rinn, J.L.1    Kertesz, M.2    Wang, J.K.3    Squazzo, S.L.4    Xu, X.5    Brugmann, S.A.6    Goodnough, L.H.7    Helms, J.A.8    Farnham, P.J.9    Segal, E.10
  • 11
    • 0028197322 scopus 로고
    • X chromosome inactivation and the Xist gene
    • 10.1016/S0959-437X(05)80056-5, 8032207
    • Rastan S. X chromosome inactivation and the Xist gene. Curr Opin Genet Dev 1994, 4(2):292-297. 10.1016/S0959-437X(05)80056-5, 8032207.
    • (1994) Curr Opin Genet Dev , vol.4 , Issue.2 , pp. 292-297
    • Rastan, S.1
  • 13
    • 33846930357 scopus 로고    scopus 로고
    • Repression of the human dihydrofolate reductase gene by a non-coding interfering transcript
    • 10.1038/nature05519, 17237763
    • Martianov I, Ramadass A, Serra Barros A, Chow N, Akoulitchev A. Repression of the human dihydrofolate reductase gene by a non-coding interfering transcript. Nature 2007, 445(7128):666-670. 10.1038/nature05519, 17237763.
    • (2007) Nature , vol.445 , Issue.7128 , pp. 666-670
    • Martianov, I.1    Ramadass, A.2    Serra Barros, A.3    Chow, N.4    Akoulitchev, A.5
  • 14
    • 33749262968 scopus 로고    scopus 로고
    • Genome-wide analysis of mRNAs bound to the histone stem-loop binding protein
    • 10.1261/rna.76006, 1581977, 16931877
    • Townley-Tilson WH, Pendergrass SA, Marzluff WF, Whitfield ML. Genome-wide analysis of mRNAs bound to the histone stem-loop binding protein. RNA 2006, 12(10):1853-1867. 10.1261/rna.76006, 1581977, 16931877.
    • (2006) RNA , vol.12 , Issue.10 , pp. 1853-1867
    • Townley-Tilson, W.H.1    Pendergrass, S.A.2    Marzluff, W.F.3    Whitfield, M.L.4
  • 15
  • 16
    • 78149342808 scopus 로고    scopus 로고
    • A novel mRNA affinity purification technique for the identification of interacting proteins and transcripts in ribonucleoprotein complexes
    • 10.1261/rna.2091710, 2957065, 20876833
    • Slobodin B, Gerst JE. A novel mRNA affinity purification technique for the identification of interacting proteins and transcripts in ribonucleoprotein complexes. RNA 2010, 16(11):2277-2290. 10.1261/rna.2091710, 2957065, 20876833.
    • (2010) RNA , vol.16 , Issue.11 , pp. 2277-2290
    • Slobodin, B.1    Gerst, J.E.2
  • 17
    • 77958594113 scopus 로고    scopus 로고
    • Proteome-wide search reveals unexpected RNA-binding proteins in Saccharomyces cerevisiae
    • 10.1371/journal.pone.0012671, 2937035, 20844764
    • Tsvetanova NG, Klass DM, Salzman J, Brown PO. Proteome-wide search reveals unexpected RNA-binding proteins in Saccharomyces cerevisiae. PLoS One 2010, 5(9):e12671. 10.1371/journal.pone.0012671, 2937035, 20844764.
    • (2010) PLoS One , vol.5 , Issue.9
    • Tsvetanova, N.G.1    Klass, D.M.2    Salzman, J.3    Brown, P.O.4
  • 18
    • 78649736872 scopus 로고    scopus 로고
    • A screen for RNA-binding proteins in yeast indicates dual functions for many enzymes
    • 10.1371/journal.pone.0015499, 2988813, 21124907
    • Scherrer T, Mittal N, Janga SC, Gerber AP. A screen for RNA-binding proteins in yeast indicates dual functions for many enzymes. PLoS One 2010, 5(11):e15499. 10.1371/journal.pone.0015499, 2988813, 21124907.
    • (2010) PLoS One , vol.5 , Issue.11
    • Scherrer, T.1    Mittal, N.2    Janga, S.C.3    Gerber, A.P.4
  • 21
    • 34249977890 scopus 로고    scopus 로고
    • Staufen1 regulates diverse classes of mammalian transcripts
    • 10.1038/sj.emboj.7601712, 1888674, 17510634
    • Kim YK, Furic L, Parisien M, Major F, DesGroseillers L, Maquat LE. Staufen1 regulates diverse classes of mammalian transcripts. EMBO J 2007, 26(11):2670-2681. 10.1038/sj.emboj.7601712, 1888674, 17510634.
    • (2007) EMBO J , vol.26 , Issue.11 , pp. 2670-2681
    • Kim, Y.K.1    Furic, L.2    Parisien, M.3    Major, F.4    DesGroseillers, L.5    Maquat, L.E.6
  • 22
    • 12944327374 scopus 로고    scopus 로고
    • Mammalian Staufen1 recruits Upf1 to specific mRNA 3′UTRs so as to elicit mRNA decay
    • 10.1016/j.cell.2004.11.050, 15680326
    • Kim YK, Furic L, Desgroseillers L, Maquat LE. Mammalian Staufen1 recruits Upf1 to specific mRNA 3′UTRs so as to elicit mRNA decay. Cell 2005, 120(2):195-208. 10.1016/j.cell.2004.11.050, 15680326.
    • (2005) Cell , vol.120 , Issue.2 , pp. 195-208
    • Kim, Y.K.1    Furic, L.2    Desgroseillers, L.3    Maquat, L.E.4
  • 24
    • 24144457783 scopus 로고    scopus 로고
    • Interaction of Staufen1 with the 5′ end of mRNA facilitates translation of these RNAs
    • 10.1093/nar/gki794, 1193567, 16126845
    • Dugre-Brisson S, Elvira G, Boulay K, Chatel-Chaix L, Mouland AJ, DesGroseillers L. Interaction of Staufen1 with the 5′ end of mRNA facilitates translation of these RNAs. Nucleic Acids Res 2005, 33(15):4797-4812. 10.1093/nar/gki794, 1193567, 16126845.
    • (2005) Nucleic Acids Res , vol.33 , Issue.15 , pp. 4797-4812
    • Dugre-Brisson, S.1    Elvira, G.2    Boulay, K.3    Chatel-Chaix, L.4    Mouland, A.J.5    DesGroseillers, L.6
  • 26
    • 33947321525 scopus 로고    scopus 로고
    • Haploinsuffciency for Znf9 in Znf9+/- mice is associated with multiorgan abnormalities resembling myotonic dystrophy
    • 10.1016/j.jmb.2007.01.088, 17335846
    • Chen W, Wang Y, Abe Y, Cheney L, Udd B, Li YP. Haploinsuffciency for Znf9 in Znf9+/- mice is associated with multiorgan abnormalities resembling myotonic dystrophy. J Mol Biol 2007, 368(1):8-17. 10.1016/j.jmb.2007.01.088, 17335846.
    • (2007) J Mol Biol , vol.368 , Issue.1 , pp. 8-17
    • Chen, W.1    Wang, Y.2    Abe, Y.3    Cheney, L.4    Udd, B.5    Li, Y.P.6
  • 28
    • 33644832266 scopus 로고    scopus 로고
    • Expression and identification of a novel apoptosis gene Spata17 (MSRG-11) in mouse spermatogenic cells
    • Deng Y, Hu LS, Lu GX. Expression and identification of a novel apoptosis gene Spata17 (MSRG-11) in mouse spermatogenic cells. Acta Biochim Biophys Sin (Shanghai) 2006, 38(1):37-45.
    • (2006) Acta Biochim Biophys Sin (Shanghai) , vol.38 , Issue.1 , pp. 37-45
    • Deng, Y.1    Hu, L.S.2    Lu, G.X.3
  • 29
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • da Huang W, Sherman BT, Lempicki RA. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc 2009, 4(1):44-57.
    • (2009) Nat Protoc , vol.4 , Issue.1 , pp. 44-57
    • da Huang, W.1    Sherman, B.T.2    Lempicki, R.A.3


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