Plant pathogen nanodiagnostic techniques: Forthcoming changes?

Biotechnology and Biotechnological Equipment

Volumn 28, Issue 5, 2014, Pages 775-785

  Khiyami, Mohammad A ^a   Almoammar, Hassan ^a   Awad, Yasser M ^b   Alghuthaymi, Mousa A ^c   Abd Elsalam, Kamel A ^d,e  

^a KING ABDULAZIZ CITY FOR SCIENCE AND TECHNOLOGY   (Saudi Arabia)

^b SUEZ CANAL UNIVERSITY   (Egypt)

^c SHAQRA UNIVERSITY   (Saudi Arabia)

^d Agricultural Research Center   (Egypt)

^e PLANT PATHOLOGY RESEARCH INSTITUTE   (Egypt)

Author keywords

Diagnosis; Nanobarcodes; Nanosensory; Quantum dots

Indexed keywords

COST EFFECTIVENESS; CROPS; DIAGNOSIS; DNA SEQUENCES; GENE ENCODING; NANOPARTICLES; NANOTECHNOLOGY; POLYMERASE CHAIN REACTION; SEMICONDUCTOR QUANTUM DOTS;

CURRENT TECHNOLOGY; HIGH-QUALITY MONITORING; HIGH-THROUGHPUT ANALYSIS; INTEGRATED DISEASE MANAGEMENTS; NANOBARCODES; NANOSENSORY; PRECISE DIAGNOSTICS; QUANTITATIVE POLYMERASE CHAIN REACTION;

PATHOGENS;

EID: 84912535102     PISSN: 13102818     EISSN: None     Source Type: Journal    
DOI: 10.1080/13102818.2014.960739     Document Type: Article

References (72)

1. Agrios GN. Plant pathology. 5th ed. San Diego (CA): Elsevier-Academic Press; 2005. p. 922.
2. van Lenteren JC. Integrated pest management in protected crops. In: Dent D, editor. Integrated pest management. London: Chapman & Hall; 1995. p. 311-343.
3. Lenteren JC van, Martin NA, Biological control of whitefly. In: Albajes R, Gullino ML, van Lenteren JC, Elad Y, editors. Integrated pest and disease management in greenhouse crops. Dordrecht, Netherlands: Kluwer Academic Publishers; 1999. p. 202-216.
4. Leake JR, Donnelly DP, Boddy L. Interactions between ectomycorrhizal fungi and saprotrophic fungi. In: Van der Heijden MGA, Sanders IR, editors. Mycorrhizal ecology. Heidelberg: Ecological Studies Springer Verlag; 2002. p. 157.
5. Abd-Elsalam KA. Nanoplatforms for plant pathogenic fungi management. Fungal Genome Biol. 2013;2:1-2.
6. Jain K. Nanodiagnostics: application of Nanotechnology (NT) in molecular diagnostics. Expert Rev Mol Diagn. 2003;(2):153-161.
7. Yalcin B, Otles S. Nanobiosensor and food pathogen interaction mechanisms. Electron J Environ Agric Food Chem. 2010;9:1257-1273.
8. Rai M, Ingle A. Role of nanotechnology in agriculture with special reference to management of insect pests. Appl Microbiol Biotechnol. 2012;94(2):287-293.
9. Gardeniers JG, van den Berg AA. Lab-on-a-chip systems for biomedical and environmental monitoring. Anal Bioanal Chem. 2004;378(7):1700-1703.
10. Monis PT, Giglio S. Nucleic acid amplification-based techniques for pathogen detection and identification. Infect Genet Evol. 2006;6(1):2-12.
11. Niedringhaus TP, Milanova D, Kerby MB, Snyder MP, Barron AE. Landscape of next-generation sequencing technologies. Anal Chem. 2011;83(12):4327-4341.
12. Ozsolak F. Third-generation sequencing techniques and applications to drug discovery. Expert Opin Drug Discover. 2012;7(3):231-243.
13. Clarke J, Wu H-C, Jayasinghe L, Patel A, Reid S, Bayley H. Continuous base identification for single-molecule nanopore DNA sequencing. Nat Nanotechnol. 2009; 4(4):265-270.
14. Zhang J, Chiodini R, Badr A, Zhang GF. The impact of next-generation sequencing on genomics. J Genet Genomics. 2011;38(3):95-109.
15. Fan C, Wang S, Hong JW, Bazan GC, Plaxco KW, Heeger AJ. Beyond superquenching: hyper-efficient energy transfer from conjugated polymers to gold nanoparticles. Proc Natl Acad Sci. 2003;100(11):6297-6301.
16. Goluch ED, Nam JM, Georganopoulou DG, Chiesl TN, Shaikh KA, Ryu KS, Barron AE, Mirkin CA, Liu C. A biobarcode assay for on-chip attomolar-sensitivity protein detection. Lab Chip. 2006;6(10):1293-1299.
17. Pimentel D. Invasive plants: their role in species extinctions and economic losses to agriculture in the USA. In: Inderjit, editor. Management of invasive weeds, invading nature - Springer Series in invasion ecology. Vol 5.Dordrecht: Springer; 2009. p. 1-7.
18. Lattanzio VMT, Nivarlet N, Lippolis V, Gatta SD, Huet AC, Delahaut P, Granier B, Visconti A. Multiplex dipstick immunoassay for semi-quantitative determination of Fusarium mycotoxins in cereals. Anal Chim Acta. 2012;718:99-108.
19. Kaewphinit T, Santiwatanakul S, Chansiri K. Colorimetric DNA based biosensor combined with loop-mediated isothermal amplification for detection of mycobacterium tuberculosis by using gold nanoprobe aggregation. Sens Transducers. 2013;142:123-128.
20. Zhou C, Mu Y, Yang M, Wu Q, Xu W, Zhang Y, Jin W, Song Q, Wu Z, Jin Q. Gold nanoparticles based colorimetric detection of target DNA after loop-mediated isothermal amplification. Chem Res Chin Univ. 2013;29:424-428.
21. Abd-Elsalam KA, Bahkali A, Moslem M, Amin O, Niessen L. An optimized protocol for DNA extraction from wheat seeds and loop-mediated isothermal amplification (LAMP) to detect Fusarium graminearum contamination of wheat grain. Int J Mol Sci. 2011;12(12):3459-3472.
22. Niessen L, Vogel RF. Detection of Fusarium graminearum DNA using a loop-mediated isothermal amplification (LAMP) assay. Int J Food Microbiol. 2010;140 (2-3):183-191.
23. Dai TT, Lu CC, Lu J, Dong S, Ye W, Wang Y, Zheng X. Development of a loop-mediated isothermal amplification assay for detection of Phytophthora sojae. FEMS Microbiol Lett. 2012;334(1):27-34.
24. Tomlinson JA, Dickinson, MJ, Boonham N. Rapid detection of Phytophthora ramorum and P. kernoviae by twominute DNA extraction followed by isothermal amplification and amplicon detection by generic lateral flow device. Phytopathology. 2010;100:143-149.
25. Luo J, Vogel RF, Niessen L. Development and application of a loop-mediated isothermal amplification assay for rapid identification of aflatoxigenic molds and their detection in food samples. Int J Food Microbiol. 2012;159(3):214-224.
26. Niessen L, Gräfenhan T, Vogel RF. ATP citrate lyase 1 (acl1) gene-based loop-mediated amplification assay for the detection of the Fusarium tricinctum species complex in pure cultures and in cereal samples. Int J Food Microbiol. 2012;158:171-185.
27. Denschlag C, Vogel RF, Niessen L. Hyd5 gene-based detection of the major gushing-inducing Fusarium spp. in a loop-mediated isothermal amplification (LAMP) assay. Int J Food Microbiol. 2012;156(3):189-196.
28. Wang L, O'Donoghue MB, Tan W. Nanoparticles for multiplex diagnostics and imaging, Nanomedicine. 2006; 1(4):413-426.
29. Thaxton CS, Georganopoulou DG, Mirkin CA. Gold nanoparticle probes for the detection of nucleic acid targets. Clin Chim Acta. 2006;363(1-2):120-126.
30. Yang H, Li H, Jiang X. Detection of foodborne pathogens using bioconjugated nanomaterials. Microfluid Nanofluid. 2008;5(5):571-583.
31. Pal S, Ying W, Alocilja EC, Downes FP. Sensitivity and specificity performance of a direct-charge transfer biosensor for detecting Bacillus cereus in selected food matrices. Biosyst Eng. 2008;99(4):461-468.
32. Poonam P, Deo N. Current correlation functions for chemical sensors based on DNA decorated carbon nanotube. N Sens Actuators B: Chem. 2008;135(1):327-335.
33. Wang J, Zhang S, Zhang Y. Fabrication of chronocoulometric DNA sensor based on gold nanoparticles/poly(llysine) modified glassy carbon electrode. 2010; 396(2):304-309.
34. Dubertret B, Calame M, Libchaber AJ. 2001. Single-mismatch detection using gold-quenched fluorescent oligonucleotides. Nat Biotechnol. 2001;19(4):365-370.
35. Firrao G, Moretti M, Ruiz-Rosquete M, Gobbi E, Locci R. Nanobiotransducer for detecting flavescence dor-ee phytoplasma. J Plant Pathol. 2005;87(2):101-107.
36. Arya H, Kaul, Z, Wadhwa R, Taira K, Hirano T, Kaul SC. Quantum dots in bio-imaging: revolution by the small. Biochem Biophys Res Commun. 2005;329(4):1173-1177.
37. Dameron CT, Reeser RN, Mehra RK, Kortan, AR, Carroll PJ, Steigerwaldm ML, Brus LE, Winge DR. Biosynthesis of cadmium sulphide quantum semiconductor crystallites. Nature. 1989;338(6216):596-597.
38. Kumar S, Ansary A, Ayoobul A, Absar A, Khan MI. Extracellular biosynthesis of CdSe quantum dots by the fungus, Fusarium oxysporum. J Biomed Nanotechnol. 2007;3:190-194.
39. Syed A, Ahmad A. Extracellular biosynthesis of CdTe quantum dots by the fungus Fusarium oxysporum and their anti-bacterial activity. Spectrochim Acta Part A: Mol Biomol Spectrosc. 2013;106:41-47.
40. Bao H, Hao N, Yang Y, Zhao D. Biosynthesis of biocompatible cadmium telluride quantum dots using yeast cells. Nano Res. 2010;3(7):481-489.
41. Sharon M, Choudhary AK, Kumar RJ. Nanotechnology in agricultural diseases and food safety. J Phytol. 2010; 2(4):83-92.
42. Nam JM, Stoeva SI, Mirkin CA. Bio-bar-code-based DNA detection with PCR-like sensitivity. J Am Chem Soc. 2004;126(19):5932-5933. Available from: http://dx.doi. org/10.1021/ja049384
43. Kankkunen P, Rintahaka J, Aalto A, Leino M, Majuri ML, Alenius H, Wolff H, Matikainen, S. Trichothecene mycotoxins activate inflammatory response in human macrophages. J Immunol. 2009;182(10):6418-6425.
44. Paniel N, Radoi A, Marty J-L. Development of an electrochemical biosensor for the detection of aflatoxin M1 in milk. Sensors. 2010;10(10):9439-9448.
45. Prieto-Simon B, Noguer T, Campas M. Emerging biotools for assessment of mycotoxins in the past decade. Trends Anal Chem. 2007;26:689-702.
46. Baeummer A. Nanosensors identify pathogens in food. Food Technol. 2004;58:51-55.
47. Bhattacharya S, Jang J, Yang L, Akin D, Bashir R. Biomems and nanotechnology based approaches for rapid detection of biological entities. J Rapid Methods Automation Microbiol. 2007;15(1):1-32.
48. Ansari AA, Kaushik A, Pratima R, Solanki Malhotra BD. Nanostructured zinc oxide platform for mycotoxin detection. Bioelectrochemistry 2010;77(2):75-81.
49. Mak AC, Osterfeld SJ, Yu H, Wang SX, Davis RW, Jejelowo OA, Pourmand N. Sensitive giant magnetoresistivebased immunoassay for multiplex mycotoxin detection. Biosens Bioelectron. 2010;25(7):1635-1639.
50. Actis P, Jejelowo O, Pourmand N. Ultrasensitive mycotoxin detection by STING sensors. Biosens Bioelectron. 2010;26(2):333-337.
51. Panini NV, Bertolino FA, Salinas E, Messina GA, Raba J. Zearalenone determination in corn silage samples using an immunosensor in a continuous-flow/stopped-flow systems. Biochem Eng J. 2010;51(1-2):7-13.
52. Alonso-Lomilloa MA, Dom-ínguez-Renedoa O, Ferreira- Gonc L, Arcos-Mart-íneza MJ. Sensitive enzyme-biosensor based on screen-printed electrodes for ochratoxin A. Biosens Bioelectron. 2010;25:1333-1337.
53. Puzyr AP, Burov AE, Bondar VS, Trusov YN. Neutralization of aflatoxin b1 by ozone treatment and adsorption by nanodiamonds. Nanotechnol Russian. 2010;5(1-2):137-141.
54. Jaynes WF, Zartman RE, Hudnall WH. Aflatoxin B1 adsorption by clays from water and corn meal. Appl Clay Sci. 2007;36(1-3):197-205.
55. Radoi A, Targa M, Prieto-Simon B, Marty JL. Enzymelinked... nanoparticles for aflatoxin M1 detection. Talanta. 2008;77(1):138-143.
56. Kaushik A, Solanki PR, Ansari AA, Ahmad S, Malhotra BS. A nanostructured cerium oxide film-based immunosensor for mycotoxin detection. Nanotechnology. 2009; 20(5):055105.
57. Kaushik A, Arya SK, Vasudev A, Bhansali S. Open J Appl Biosens. 2013;2(1):1-11.
58. Sharma A, Matharu Z, Sumana G, Solanki PR, Kim CG, Malhotra BD. Antibody immobilized cysteamine functionalized- gold nanoparticles for aflatoxin detection. Thin Solid Films. 2010;519(3):1213-1218.
59. Biswal SK, Nayak AK, Parida UK, Nayak PL. Applications of nanotechnology in agriculture and food sciences. Int J Sci Innovations Discov. 2012;2:21-36.
60. Bogue B. Nanosensors: a review of recent progress. Emerald Group Publishing Limited, UK; 2008.
61. Esker PD, Sparks AH, Campbell L, Guo Z, Rouse M, Silwal SD, Tolos S, Van Allen B, Garrett KA. Ecology and epidemiology in R: disease forecasting and validation. [Online]. Plant Health Instructor. 2008. doi:10.1094/PHIA-029-01
62. Sekhon BS. Food nanotechnology - an overview. J Nanotechnol Sci Appl. 2010;3:1-15.
63. Small J, Call DR, Brockman FJ, Straub TM, Chandler, DP. Direct detection of 16S rRNA in soil extracts by using oligonucleotide microarrays. Appl Environ Microbiol. 2001;67(10):4708-4716.
64. Hashimoto Y, Nakamura H, Koichi AK, Karube I. A new diagnostic method for soil-borne disease using a microbial biosensor. Microbes Environ. 2008;23(1):35-9.
65. Dubas ST, Pimpan V. Green synthesis of silver nanoparticles for ammonia sensing. Talanta. 2008;76(1):29-33.
66. Yao KS, Li, SJ, Tzeng KC, Cheng TC, Chang CY, Chiu CY, Liao CY, Hsu JJ, Lin ZP. Fluorescence silica nanoprobe as a biomarker for rapid detection of plant pathogens. Multi-Funct Mater Struct II. Parts 1 and 2. 2009;79-82:513-516.
67. Etefagh R, Azhir E, Shahtahmasebi N. Synthesis of CuO nanoparticles and fabrication of nanostructural layer biosensors for detecting Aspergillus niger fungi. Sci Iranian. 2013;20(3):1055-1058.
68. Rosen JE, Yoffe S, Meerasa A, Verma M, Gu FX. Nanotechnology and diagnostic imaging: new advances in contrast agent technology. J Nanomed Nanotechnol. 2011; 2(5):1-12.
69. Nie L. Biomedical nanotechnology for optical molecular imaging, diagnostics, and therapeutics. JSM Nanotechnol Nanomed. 2013;1(1):1-2.
70. Mccandless L. Nanotechnology offers new insights into plant pathology. College of Agriculture and Life Sciences News, Cornell University; Summer 2005. p. 17-18.
71. Meng Y, Li, Y, Galvani CD, Hao G, Turner JN, Burr TJ, Hoch HC. Upstream migration of Xylella fastidiosa via Pilus-Driven twitching motility. J Bacteriol. 2005;187 (16):5560-5567.
72. Gonz-alez-Melendi P, Fernandez-Pacheco R, Coronado MJ, Corredor E, Testillano PS, Risueño MC, Marquina C, Ibarra MR, Rubiales D, P-erez-de-Luque A. Nanoparticles as smart treatment delivery systems in plants: assessment of different techniques of microscopy for their visualisation in plant tissues. Ann Bot. 2007;101(1):187-195.