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Volumn 53, Issue PB, 2014, Pages 235-241

Computational analysis of 3′UTR region of CASP3 with respect to miRSNPs and SNPs in targetting miRNAs

Author keywords

3 UTR region; Apoptosis miRSNP; Caspase 3; miRNA targetting

Indexed keywords

CASPASE-3; COMPUTATIONAL ANALYSIS; TARGETTING;

EID: 84910086720     PISSN: 14769271     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.compbiolchem.2014.10.004     Document Type: Article
Times cited : (8)

References (65)
  • 1
    • 84883732254 scopus 로고    scopus 로고
    • MiR-26b, upregulated in Alzheimer's disease, activates cell cycle entry, tau-phosphorylation, and apoptosis in postmitotic neurons
    • S. Absalon, D.M. Kochanek, V. Raghavan, and A.M. Krichevsky MiR-26b, upregulated in Alzheimer's disease, activates cell cycle entry, tau-phosphorylation, and apoptosis in postmitotic neurons J. Neurosci. 33 37 2013 14645 14659
    • (2013) J. Neurosci. , vol.33 , Issue.37 , pp. 14645-14659
    • Absalon, S.1    Kochanek, D.M.2    Raghavan, V.3    Krichevsky, A.M.4
  • 2
    • 58249088751 scopus 로고    scopus 로고
    • MicroRNAs target recognition and regulatory functions
    • D.P. Bartel MicroRNAs target recognition and regulatory functions Cell 7 2009 215 233
    • (2009) Cell , vol.7 , pp. 215-233
    • Bartel, D.P.1
  • 3
    • 77955963884 scopus 로고    scopus 로고
    • Comprehensive modeling of microRNA targets predicts functional non-conserved and non-canonical sites
    • D. Betel, A. Koppal, P. Agius, C. Sander, and C. Leslie Comprehensive modeling of microRNA targets predicts functional non-conserved and non-canonical sites Genome Biol. 11 8 2010 R90
    • (2010) Genome Biol. , vol.11 , Issue.8 , pp. 90
    • Betel, D.1    Koppal, A.2    Agius, P.3    Sander, C.4    Leslie, C.5
  • 6
    • 84868130868 scopus 로고    scopus 로고
    • Let-7a inhibits proliferation and induces apoptosis by targeting EZH2 in nasopharyngeal carcinoma cells
    • K. Cai, Y. Wan, G. Sun, L. Shi, X. Bao, and Z. Wang Let-7a inhibits proliferation and induces apoptosis by targeting EZH2 in nasopharyngeal carcinoma cells Oncol. Rep. 28 6 2012 2101 2106
    • (2012) Oncol. Rep. , vol.28 , Issue.6 , pp. 2101-2106
    • Cai, K.1    Wan, Y.2    Sun, G.3    Shi, L.4    Bao, X.5    Wang, Z.6
  • 8
    • 84979831220 scopus 로고    scopus 로고
    • Effect of miR-221 on the viability and apoptosis of hepatocellular carcinoma HepG2 cells
    • G. Chen, Y.W. Dang, and D.Z. Luo Effect of miR-221 on the viability and apoptosis of hepatocellular carcinoma HepG2 cells Zhonghua Gan Zang Bing Za Zhi 19 8 2011 582 587
    • (2011) Zhonghua Gan Zang Bing Za Zhi , vol.19 , Issue.8 , pp. 582-587
    • Chen, G.1    Dang, Y.W.2    Luo, D.Z.3
  • 9
    • 84863046059 scopus 로고    scopus 로고
    • Downregulation of miR-221/222 sensitizes glioma cells to temozolomide by regulating apoptosis independently of p53 status
    • L. Chen, J. Zhang, L. Han, A. Zhang, C. Zhang, Y. Zheng, T. Jiang, P. Pu, C. Jiang, and C. Kang Downregulation of miR-221/222 sensitizes glioma cells to temozolomide by regulating apoptosis independently of p53 status Oncol. Rep. 27 3 2012 854 860
    • (2012) Oncol. Rep. , vol.27 , Issue.3 , pp. 854-860
    • Chen, L.1    Zhang, J.2    Han, L.3    Zhang, A.4    Zhang, C.5    Zheng, Y.6    Jiang, T.7    Pu, P.8    Jiang, C.9    Kang, C.10
  • 14
    • 60149095444 scopus 로고    scopus 로고
    • Most mammalian mRNAs are conserved targets of microRNAs
    • R.C. Friedman, K.K. Farh, C.B. Burge, and D.P. Bartel Most mammalian mRNAs are conserved targets of microRNAs Genome Res. 7 2009 92 105
    • (2009) Genome Res. , vol.7 , pp. 92-105
    • Friedman, R.C.1    Farh, K.K.2    Burge, C.B.3    Bartel, D.P.4
  • 17
    • 68049143304 scopus 로고    scopus 로고
    • Apoptosis and cancer: Mutations within caspase genes
    • S. Ghavami, M. Hashemi, and S.R. Ande Apoptosis and cancer: mutations within caspase genes J. Med. Genet. 46 8 2009 497 510
    • (2009) J. Med. Genet. , vol.46 , Issue.8 , pp. 497-510
    • Ghavami, S.1    Hashemi, M.2    Ande, S.R.3
  • 21
    • 0034641918 scopus 로고    scopus 로고
    • The biochemistry of apoptosis
    • M.O. Hengartner The biochemistry of apoptosis Nature 407 2000 770 776
    • (2000) Nature , vol.407 , pp. 770-776
    • Hengartner, M.O.1
  • 22
    • 0032807406 scopus 로고    scopus 로고
    • The modular nature of apoptotic signaling proteins
    • K. Hofmann The modular nature of apoptotic signaling proteins Cell. Mol. Life Sci. 55 1999 1113 1128
    • (1999) Cell. Mol. Life Sci. , vol.55 , pp. 1113-1128
    • Hofmann, K.1
  • 25
    • 0030947095 scopus 로고    scopus 로고
    • Programmed cell death in animal development
    • M.D. Jacobson, M. Weil, and M.C. Raff Programmed cell death in animal development Cell 88 1997 347 354
    • (1997) Cell , vol.88 , pp. 347-354
    • Jacobson, M.D.1    Weil, M.2    Raff, M.C.3
  • 26
    • 84873846295 scopus 로고    scopus 로고
    • MiR-30a-5p antisense oligonucleotide suppresses glioma cell growth by targeting SEPT7
    • Z. Jia, K. Wang, G. Wang, A. Zhang, and P. Pu MiR-30a-5p antisense oligonucleotide suppresses glioma cell growth by targeting SEPT7 PLoS One. 8 1 2013 e55008
    • (2013) PLoS One. , vol.8 , Issue.1 , pp. 55008
    • Jia, Z.1    Wang, K.2    Wang, G.3    Zhang, A.4    Pu, P.5
  • 27
    • 84891818318 scopus 로고    scopus 로고
    • MiRBase: Annotating high confidence microRNAs using deep sequencing data
    • A. Kozomara, and S. Griffiths-Jones MiRBase: annotating high confidence microRNAs using deep sequencing data Nucleic Acids Res. 7 2014 D68 D73
    • (2014) Nucleic Acids Res. , vol.7 , pp. 68-D73
    • Kozomara, A.1    Griffiths-Jones, S.2
  • 28
    • 0036858041 scopus 로고    scopus 로고
    • Oxidative stress and apoptosis in heart dysfunction
    • D. Kumar, H. Lou, and P.K. Singal Oxidative stress and apoptosis in heart dysfunction Herz 2002 662 668
    • (2002) Herz , pp. 662-668
    • Kumar, D.1    Lou, H.2    Singal, P.K.3
  • 29
    • 0032762030 scopus 로고    scopus 로고
    • Mechanisms mediating caspase activation in cell death
    • S. Kumar Mechanisms mediating caspase activation in cell death Cell Death Differ. 6 1999 1060 1066
    • (1999) Cell Death Differ. , vol.6 , pp. 1060-1066
    • Kumar, S.1
  • 30
    • 84897969135 scopus 로고    scopus 로고
    • Effects of aging and exercise training on apoptosis in the heart
    • H. Kwak Effects of aging and exercise training on apoptosis in the heart J. Exercise Rehabil. 9 2 2013 212 219
    • (2013) J. Exercise Rehabil. , vol.9 , Issue.2 , pp. 212-219
    • Kwak, H.1
  • 32
    • 84862639666 scopus 로고    scopus 로고
    • MiR-26b promotes granulosa cell apoptosis by targeting ATM during follicular atresia in porcine ovary
    • F. Lin, R. Li, Z.X. Pan, B. Zhou, B. Yu de, X.G. Wang, X.S. Ma, J. Han, M. Shen, and H.L. Liu MiR-26b promotes granulosa cell apoptosis by targeting ATM during follicular atresia in porcine ovary PLoS One 7 6 2012 e38640
    • (2012) PLoS One , vol.7 , Issue.6 , pp. 38640
    • Lin, F.1    Li, R.2    Pan, Z.X.3    Zhou, B.4    De, Y.B.5    Wang, X.G.6    Ma, X.S.7    Han, J.8    Shen, M.9    Liu, H.L.10
  • 34
    • 84910048344 scopus 로고    scopus 로고
    • Aberrant expression miR-196a is associated with abnormal apoptosis, invasion and proliferation of pancreatic cancer cells
    • M. Liu, Y. Du, J. Gao, J. Liu, X. Kong, Y. Gong, Z. Li, H. Wu, and H. Chen Aberrant expression miR-196a is associated with abnormal apoptosis, invasion and proliferation of pancreatic cancer cells Cancer Research 2010 6015 6025
    • (2010) Cancer Research , pp. 6015-6025
    • Liu, M.1    Du, Y.2    Gao, J.3    Liu, J.4    Kong, X.5    Gong, Y.6    Li, Z.7    Wu, H.8    Chen, H.9
  • 36
    • 84857870578 scopus 로고    scopus 로고
    • Apoptosis in skeletal myocytes: A potential target for interventions against sarcopenia and physical frailty - A mini-review
    • E. Marzetti, R. Calvani, R. Bernabei, and C. Leeuwenburgh Apoptosis in skeletal myocytes: a potential target for interventions against sarcopenia and physical frailty - a mini-review Gerontology 58 2012 99 106
    • (2012) Gerontology , vol.58 , pp. 99-106
    • Marzetti, E.1    Calvani, R.2    Bernabei, R.3    Leeuwenburgh, C.4
  • 37
    • 79959847017 scopus 로고    scopus 로고
    • Dysregulation of microRNAs in cancer: Playing with fire
    • S.A. Melo, and M. Esteller Dysregulation of microRNAs in cancer: playing with fire FEBS Lett. 7 2011 2087 2099
    • (2011) FEBS Lett. , vol.7 , pp. 2087-2099
    • Melo, S.A.1    Esteller, M.2
  • 40
    • 79952783987 scopus 로고    scopus 로고
    • MicroRNAs as therapeutic targets in cancer
    • S.P. Nana-Sinkam, and C.M. Croce MicroRNAs as therapeutic targets in cancer Transl. Res. 157 2011 216 225
    • (2011) Transl. Res. , vol.157 , pp. 216-225
    • Nana-Sinkam, S.P.1    Croce, C.M.2
  • 41
    • 0032785021 scopus 로고    scopus 로고
    • Caspase structure, proteolytic substrates, and function during apoptotic cell death
    • M.W. Nicholson Caspase structure, proteolytic substrates, and function during apoptotic cell death Cell Death Differ. 6 1999 1028 1042
    • (1999) Cell Death Differ. , vol.6 , pp. 1028-1042
    • Nicholson, M.W.1
  • 42
    • 84892150589 scopus 로고    scopus 로고
    • MicroRNA function and dysregulation in bone tumors: The evidence to date
    • M. Nugent MicroRNA function and dysregulation in bone tumors: the evidence to date Cancer Manage. Res. 6 2014 15 25
    • (2014) Cancer Manage. Res. , vol.6 , pp. 15-25
    • Nugent, M.1
  • 44
    • 0034767382 scopus 로고    scopus 로고
    • Apoptosis and aging: Role of the mitochondria
    • M. Pollack, and C. Leeuwenburgh Apoptosis and aging: role of the mitochondria J. Geron. 56A 2001 B475 B482
    • (2001) J. Geron. , vol.56 A , pp. 475-B482
    • Pollack, M.1    Leeuwenburgh, C.2
  • 45
    • 0036238915 scopus 로고    scopus 로고
    • The role of apoptosis in the normal aging brain, skeletal muscle, and heart
    • M. Pollack, S. Phaneuf, A. Dirks, and C. Leeuwenburgh The role of apoptosis in the normal aging brain, skeletal muscle, and heart Ann. N. Y. Acad. Sci. 959 2002 93 1072
    • (2002) Ann. N. Y. Acad. Sci. , vol.959 , pp. 93-1072
    • Pollack, M.1    Phaneuf, S.2    Dirks, A.3    Leeuwenburgh, C.4
  • 48
    • 84872182721 scopus 로고    scopus 로고
    • Increased miR-221 expression in hepatocellular carcinoma tissues and its role in enhancing cell growth and inhibiting apoptosis in vitro
    • M. Rong, G. Chen, and Y. Dang Increased miR-221 expression in hepatocellular carcinoma tissues and its role in enhancing cell growth and inhibiting apoptosis in vitro BMC Cancer 13 2013 21
    • (2013) BMC Cancer , vol.13 , pp. 21
    • Rong, M.1    Chen, G.2    Dang, Y.3
  • 49
    • 0036144378 scopus 로고    scopus 로고
    • Caspases opening the boxes and interpreting the arrows
    • G.S. Salvesen Caspases opening the boxes and interpreting the arrows Cell Death Differ. 1 2002 3 5
    • (2002) Cell Death Differ. , vol.1 , pp. 3-5
    • Salvesen, G.S.1
  • 50
    • 84872283359 scopus 로고    scopus 로고
    • SNPing cancer in the bud: MicroRNA and microRNA-target site polymorphisms as diagnostic and prognostic biomarkers in cancer
    • D.W. Salzman, and J.B. Weidhaas SNPing cancer in the bud: microRNA and microRNA-target site polymorphisms as diagnostic and prognostic biomarkers in cancer Pharmacol. Ther. 7 2013 55 63
    • (2013) Pharmacol. Ther. , vol.7 , pp. 55-63
    • Salzman, D.W.1    Weidhaas, J.B.2
  • 51
    • 84884633364 scopus 로고    scopus 로고
    • Smad2-dependent downregulation of miR-30 is required for TGF-β-induced apoptosis in podocytes
    • S. Shi, L. Yu, T. Zhang, H. Qi, S. Xavier, W. Ju, and E. Bottinger Smad2-dependent downregulation of miR-30 is required for TGF-β-induced apoptosis in podocytes PLoS One 8 9 2013 e75572
    • (2013) PLoS One , vol.8 , Issue.9 , pp. 75572
    • Shi, S.1    Yu, L.2    Zhang, T.3    Qi, H.4    Xavier, S.5    Ju, W.6    Bottinger, E.7
  • 52
    • 84910044838 scopus 로고    scopus 로고
    • Microrna-mediated regulation of apoptosis in osteosarcoma
    • M. Shimada Microrna-mediated regulation of apoptosis in osteosarcoma J. Carcinogen. Mutagen. 2013 S6001
    • (2013) J. Carcinogen. Mutagen. , pp. 6001
    • Shimada, M.1
  • 54
    • 51749088101 scopus 로고    scopus 로고
    • Let-7a microRNA suppresses therapeutics-induced cancer cell death by targeting caspase-3
    • W.P. Tsang, and T.T. Kwok Let-7a microRNA suppresses therapeutics-induced cancer cell death by targeting caspase-3 Apoptosis 13 10 2008 1215 1222
    • (2008) Apoptosis , vol.13 , Issue.10 , pp. 1215-1222
    • Tsang, W.P.1    Kwok, T.T.2
  • 55
    • 73149085726 scopus 로고    scopus 로고
    • A constitutively active and uninhibitable caspase-3 zymogen efficiently induces apoptosis
    • J. Walters, C. Pop, and F.L. Scott A constitutively active and uninhibitable caspase-3 zymogen efficiently induces apoptosis Biochem. J. 424 3 2009 335 345
    • (2009) Biochem. J. , vol.424 , Issue.3 , pp. 335-345
    • Walters, J.1    Pop, C.2    Scott, F.L.3
  • 56
    • 84875113959 scopus 로고    scopus 로고
    • MiR-30d induces apoptosis and is regulated by the Akt/FOXO pathway in renal cell carcinoma
    • C. Wu, B. Jin, L. Chen, D. Zhuo, Z. Zhang, K. Gong, and Z. Mao MiR-30d induces apoptosis and is regulated by the Akt/FOXO pathway in renal cell carcinoma Cell. Signall. 25 5 2013 1212 1221
    • (2013) Cell. Signall. , vol.25 , Issue.5 , pp. 1212-1221
    • Wu, C.1    Jin, B.2    Chen, L.3    Zhuo, D.4    Zhang, Z.5    Gong, K.6    Mao, Z.7
  • 57
    • 84901444226 scopus 로고    scopus 로고
    • Huaier suppresses proliferation and induces apoptosis in human pulmonary cancer cells via upregulation of miR-26b-5p
    • T. Wu, W. Chen, S. Liu, H. Lu, H. Wang, D. Kong, X. Huang, Q. Kong, Y. Ning, and Z. Lu Huaier suppresses proliferation and induces apoptosis in human pulmonary cancer cells via upregulation of miR-26b-5p FEBS Lett. 588 12 2014 2107 2114
    • (2014) FEBS Lett. , vol.588 , Issue.12 , pp. 2107-2114
    • Wu, T.1    Chen, W.2    Liu, S.3    Lu, H.4    Wang, H.5    Kong, D.6    Huang, X.7    Kong, Q.8    Ning, Y.9    Lu, Z.10
  • 60
    • 0036604336 scopus 로고    scopus 로고
    • Aging-associated increases in the activityof multiple caspases in Fischer 344 rat organs
    • Zhang, E. Chong, and B. Herman Aging-associated increases in the activityof multiple caspases in Fischer 344 rat organs Exp. Geront. 37 2002 777 789
    • (2002) Exp. Geront. , vol.37 , pp. 777-789
    • Zhang1    Chong, E.2    Herman, B.3
  • 62
    • 79952115564 scopus 로고    scopus 로고
    • Inhibitory effect of knocking down microRNA-221 and microRNA-222 on glioma cell growth in vitro and in vivo
    • C.Z. Zhang, C.S. Kang, P.Y. Pu, G.X. Wang, Z.F. Jia, A.L. Zhang, L. Han, and P. Xu Inhibitory effect of knocking down microRNA-221 and microRNA-222 on glioma cell growth in vitro and in vivo Zhonghua Zhong Liu Za Zhi 31 10 2009 721 726
    • (2009) Zhonghua Zhong Liu Za Zhi , vol.31 , Issue.10 , pp. 721-726
    • Zhang, C.Z.1    Kang, C.S.2    Pu, P.Y.3    Wang, G.X.4    Jia, Z.F.5    Zhang, A.L.6    Han, L.7    Xu, P.8
  • 63
  • 65
    • 84896718544 scopus 로고    scopus 로고
    • MicroRNA-26b suppresses the NF-(B signaling and enhances the chemosensitivity of hepatocellular carcinomacells by targeting TAK1 and TAB3
    • N. Zhao, R. Wang, L. Zhou, Y. Zhu, J. Gong, and S.M. Zhuang MicroRNA-26b suppresses the NF-(B signaling and enhances the chemosensitivity of hepatocellular carcinomacells by targeting TAK1 and TAB3 Mol. Cancer 13 2014 35
    • (2014) Mol. Cancer , vol.13 , pp. 35
    • Zhao, N.1    Wang, R.2    Zhou, L.3    Zhu, Y.4    Gong, J.5    Zhuang, S.M.6


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