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Volumn 28, Issue 6, 2012, Pages 771-776

Functional microRNA targets in protein coding sequences

Author keywords

[No Author keywords available]

Indexed keywords

MAMMALIA;

EID: 84859067415     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/bts043     Document Type: Article
Times cited : (430)

References (34)
  • 1
    • 77953547289 scopus 로고    scopus 로고
    • miR-519 suppresses tumor growth by reducing HuR levels
    • Abdelmohsen, K. et al. (2010) miR-519 suppresses tumor growth by reducing HuR levels. Cell cycle, 9, 1354-1359.
    • (2010) Cell cycle , vol.9 , pp. 1354-1359
    • Abdelmohsen, K.1
  • 2
    • 74049088856 scopus 로고    scopus 로고
    • Lost in translation: an assessment and perspective for computational microRNA target identification
    • Alexiou, P. et al. (2009) Lost in translation: an assessment and perspective for computational microRNA target identification. Bioinformatics, 25, 3049-3055.
    • (2009) Bioinformatics , vol.25 , pp. 3049-3055
    • Alexiou, P.1
  • 3
    • 49949116902 scopus 로고    scopus 로고
    • The impact of microRNAs on protein output
    • Baek, D. et al. (2008) The impact of microRNAs on protein output. Nature, 455, 64-71.
    • (2008) Nature , vol.455 , pp. 64-71
    • Baek, D.1
  • 4
    • 58249088751 scopus 로고    scopus 로고
    • MicroRNAs: target recognition and regulatory functions
    • Bartel, D. P. (2009) MicroRNAs: target recognition and regulatory functions. Cell, 136, 215-233.
    • (2009) Cell , vol.136 , pp. 215-233
    • Bartel, D.P.1
  • 5
    • 67749132423 scopus 로고    scopus 로고
    • Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps
    • Chi, S. W. et al. (2009) Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps. Nature, 460, 479-486.
    • (2009) Nature , vol.460 , pp. 479-486
    • Chi, S.W.1
  • 6
    • 3242877996 scopus 로고    scopus 로고
    • Sfold web server for statistical folding and rational design of nucleic acids
    • Ding, Y. et al. (2004) Sfold web server for statistical folding and rational design of nucleic acids. Nucleic Acids Res., 32, W135-W141.
    • (2004) Nucleic Acids Res. , vol.32
    • Ding, Y.1
  • 7
    • 42449086421 scopus 로고    scopus 로고
    • miR-148 targets human DNMT3b protein coding region
    • Duursma, A. M. et al. (2008) miR-148 targets human DNMT3b protein coding region. RNA, 14, 872-877.
    • (2008) RNA , vol.14 , pp. 872-877
    • Duursma, A.M.1
  • 8
    • 67651083537 scopus 로고    scopus 로고
    • CRD-BP protects the coding region of betaTrCP1 mRNA from miR-183-mediated degradation
    • Elcheva, I. et al. (2009) CRD-BP protects the coding region of betaTrCP1 mRNA from miR-183-mediated degradation. Mol Cell., 35, 240-246.
    • (2009) Mol Cell , vol.35 , pp. 240-246
    • Elcheva, I.1
  • 9
    • 79952907985 scopus 로고    scopus 로고
    • The impact of miRNAtarget sites in coding sequences and in 3'UTRs
    • Fang, Z. and Rajewsky, N. (2011) The impact of miRNAtarget sites in coding sequences and in 3'UTRs. PLoS One, 6, e18067.
    • (2011) PLoS One , vol.6
    • Fang, Z.1    Rajewsky, N.2
  • 10
    • 77953563697 scopus 로고    scopus 로고
    • The code within the code: microRNAs target coding regions
    • Forman, J. J. and Coller, H. A. (2010) The code within the code: microRNAs target coding regions. Cell cycle, 9, 1533-1541.
    • (2010) Cell cycle , vol.9 , pp. 1533-1541
    • Forman, J.J.1    Coller, H.A.2
  • 11
    • 54449097149 scopus 로고    scopus 로고
    • A search for conserved sequences in coding regions reveals that the let-7 microRNA targets Dicer within its coding sequence
    • Forman, J. J. et al. (2008) A search for conserved sequences in coding regions reveals that the let-7 microRNA targets Dicer within its coding sequence. Proc. Natl Acad. Sci. USA, 105, 14879-14884.
    • (2008) Proc. Natl Acad. Sci. USA , vol.105 , pp. 14879-14884
    • Forman, J.J.1
  • 12
    • 60149095444 scopus 로고    scopus 로고
    • Most mammalian mRNAs are conserved targets of microRNAs
    • Friedman, R. C. et al. (2009) Most mammalian mRNAs are conserved targets of microRNAs. Genome Res., 19, 92-105.
    • (2009) Genome Res. , vol.19 , pp. 92-105
    • Friedman, R.C.1
  • 13
    • 61849143920 scopus 로고    scopus 로고
    • MicroRNA target prediction by expression analysis of host genes
    • Gennarino, V. A. et al. (2009) MicroRNA target prediction by expression analysis of host genes. Genome Res., 19, 481-490.
    • (2009) Genome Res. , vol.19 , pp. 481-490
    • Gennarino, V.A.1
  • 14
    • 34250805982 scopus 로고    scopus 로고
    • MicroRNA targeting specificity in mammals: determinants beyond seed pairing
    • Grimson, A. et al. (2007) MicroRNA targeting specificity in mammals: determinants beyond seed pairing. Cell. 27, 91-105.
    • (2007) Cell , vol.27 , pp. 91-105
    • Grimson, A.1
  • 15
    • 77950920903 scopus 로고    scopus 로고
    • Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP
    • Hafner, M. et al. (2010) Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP. Cell, 141, 129-141.
    • (2010) Cell , vol.141 , pp. 129-141
    • Hafner, M.1
  • 16
    • 14044251458 scopus 로고    scopus 로고
    • Human MicroRNA targets
    • John, B. et al. (2004) Human MicroRNA targets. PLoS Biol., 2, e363.
    • (2004) PLoS Biol. , vol.2
    • John, B.1
  • 17
    • 2442672918 scopus 로고    scopus 로고
    • Acombined computational-experimental approach predicts human microRNA targets
    • Kiriakidou, M. et al. (2004)Acombined computational-experimental approach predicts human microRNA targets. Genes Dev., 18, 1165-1178.
    • (2004) Genes Dev. , vol.18 , pp. 1165-1178
    • Kiriakidou, M.1
  • 18
    • 33644756532 scopus 로고    scopus 로고
    • Agenome-wide map of conserved microRNA targets in C. elegans
    • Lall, S. et al. (2006)Agenome-wide map of conserved microRNA targets in C. elegans. Curr. Biol., 16, 460-471.
    • (2006) Curr. Biol. , vol.16 , pp. 460-471
    • Lall, S.1
  • 19
    • 0346094457 scopus 로고    scopus 로고
    • Prediction of mammalian microRNA targets
    • Lewis, B. P. et al. (2003) Prediction of mammalian microRNA targets. Cell, 115, 787-798.
    • (2003) Cell , vol.115 , pp. 787-798
    • Lewis, B.P.1
  • 20
    • 33947224690 scopus 로고    scopus 로고
    • Transcripts targeted by the microRNA-16 family cooperatively regulate cell cycle progression
    • Linsley, P. S. et al. (2007) Transcripts targeted by the microRNA-16 family cooperatively regulate cell cycle progression. Mol. Cell Biol., 27, 2240-2252.
    • (2007) Mol. Cell Biol. , vol.27 , pp. 2240-2252
    • Linsley, P.S.1
  • 21
    • 70449372292 scopus 로고    scopus 로고
    • Accurate microRNA target prediction correlates with protein repression levels
    • Maragkakis, M. et al. (2009a) Accurate microRNA target prediction correlates with protein repression levels. BMC Bioinformatics, 10, 295.
    • (2009) BMC Bioinformatics , vol.10 , pp. 295
    • Maragkakis, M.1
  • 22
    • 67650747402 scopus 로고    scopus 로고
    • DIANA-microT web server: elucidating microRNA functions through target prediction
    • Maragkakis, M. et al. (2009b) DIANA-microT web server: elucidating microRNA functions through target prediction. Nucleic Acids Res., 37, W273-W276.
    • (2009) Nucleic Acids Res. , vol.37
    • Maragkakis, M.1
  • 23
    • 33748587841 scopus 로고    scopus 로고
    • Apattern-based method for the identification of MicroRNA binding sites and their corresponding heteroduplexes
    • Miranda, K. C. et al. (2006)Apattern-based method for the identification of MicroRNA binding sites and their corresponding heteroduplexes. Cell, 126, 1203-1217.
    • (2006) Cell , vol.126 , pp. 1203-1217
    • Miranda, K.C.1
  • 24
    • 58149203235 scopus 로고    scopus 로고
    • The database of experimentally supported targets: a functional update of TarBase
    • Papadopoulos, G. L. et al. (2009) The database of experimentally supported targets: a functional update of TarBase. Nucleic Acids Res., 37, D155-D158.
    • (2009) Nucleic Acids Res. , vol.37
    • Papadopoulos, G.L.1
  • 25
    • 4644237189 scopus 로고    scopus 로고
    • Fast and effective prediction of microRNA/target duplexes
    • Rehmsmeier, M. et al. (2004) Fast and effective prediction of microRNA/target duplexes. RNA, 10, 1507-1517.
    • (2004) RNA , vol.10 , pp. 1507-1517
    • Rehmsmeier, M.1
  • 26
    • 79960489634 scopus 로고    scopus 로고
    • Unusually effective microRNA targeting within repeatrich coding regions of mammalian mRNAs
    • Schnall-Levin, M. et al. (2011) Unusually effective microRNA targeting within repeatrich coding regions of mammalian mRNAs. Genome Res., 21, 1395-1403.
    • (2011) Genome Res. , vol.21 , pp. 1395-1403
    • Schnall-Levin, M.1
  • 27
    • 77957662209 scopus 로고    scopus 로고
    • Conserved microRNA targeting in Drosophila is as widespread in coding regions as in 3'UTRs
    • Schnall-Levin, M. et al. (2010) Conserved microRNA targeting in Drosophila is as widespread in coding regions as in 3'UTRs. Proc. Natl Acad. Sci. USA, 107, 15751-15756.
    • (2010) Proc. Natl Acad. Sci. USA , vol.107 , pp. 15751-15756
    • Schnall-Levin, M.1
  • 28
    • 49949117302 scopus 로고    scopus 로고
    • Widespread changes in protein synthesis induced by microRNAs
    • Selbach, M. et al. (2008) Widespread changes in protein synthesis induced by microRNAs. Nature, 455, 58-63.
    • (2008) Nature , vol.455 , pp. 58-63
    • Selbach, M.1
  • 29
    • 77951157723 scopus 로고    scopus 로고
    • MicroRNAs regulate human hepatocyte nuclear factor 4alpha, modulating the expression of metabolic enzymes and cell cycle
    • Takagi, S. et al. (2010) MicroRNAs regulate human hepatocyte nuclear factor 4alpha, modulating the expression of metabolic enzymes and cell cycle. J. Biol. Chem., 285, 4415-4422.
    • (2010) J. Biol. Chem. , vol.285 , pp. 4415-4422
    • Takagi, S.1
  • 30
    • 54549108798 scopus 로고    scopus 로고
    • MicroRNAs to Nanog, Oct4 and Sox2 coding regions modulate embryonic stem cell differentiation
    • Tay, Y. et al. (2008) MicroRNAs to Nanog, Oct4 and Sox2 coding regions modulate embryonic stem cell differentiation. Nature, 455, 1124-1128.
    • (2008) Nature , vol.455 , pp. 1124-1128
    • Tay, Y.1
  • 32
    • 77954096083 scopus 로고    scopus 로고
    • Individual microRNAs (miRNAs) display distinct mRNA targeting 'rules'
    • Wang, W.-X. et al. (2011) Individual microRNAs (miRNAs) display distinct mRNA targeting 'rules'. RNA Biol., 7, 373-380.
    • (2011) RNA Biol. , vol.7 , pp. 373-380
    • Wang, W.-X.1
  • 33
    • 33645472191 scopus 로고    scopus 로고
    • Systematic identification of microRNA functions by combining target prediction and expression profiling
    • Wang, X. and Wang, X. (2006) Systematic identification of microRNA functions by combining target prediction and expression profiling. Nucleic Acids Res., 34, 1646-1652.
    • (2006) Nucleic Acids Res. , vol.34 , pp. 1646-1652
    • Wang, X.1    Wang, X.2
  • 34
    • 79954993788 scopus 로고    scopus 로고
    • MicroRNA transfection and AGO-bound CLIP-seq datasets reveal distinct determinants of miRNA action
    • Wen, J. et al. (2011) MicroRNA transfection and AGO-bound CLIP-seq datasets reveal distinct determinants of miRNA action. RNA, 17, 820-834.
    • (2011) RNA , vol.17 , pp. 820-834
    • Wen, J.1


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