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Volumn 22, Issue 9, 2012, Pages 1790-1797

Annotation of functional variation in personal genomes using RegulomeDB

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; DATA BASE; GENETIC ASSOCIATION; GENETIC VARIABILITY; HUMAN; HUMAN GENOME; HYPOTHESIS; MOLECULAR GENETICS; PRIORITY JOURNAL; REGULOMEDB;

EID: 84865712382     PISSN: 10889051     EISSN: 15495469     Source Type: Journal    
DOI: 10.1101/gr.137323.112     Document Type: Article
Times cited : (2093)

References (53)
  • 1
    • 84975742565 scopus 로고    scopus 로고
    • A map of human genome variation from population-scale sequencing
    • The 1000 Genomes Project Consortium
    • The 1000 Genomes Project Consortium. 2010. A map of human genome variation from population-scale sequencing. Nature 467: 1061-1073.
    • (2010) Nature , vol.467 , pp. 1061-1073
  • 5
    • 33750882505 scopus 로고    scopus 로고
    • Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities
    • DOI 10.1038/nbt1246, PII NBT1246
    • Berger MF, Philippakis AA, Qureshi AM, He FS, Estep PW III, Bulyk ML. 2006. Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities. Nat Biotechnol 24: 1429-1435. (Pubitemid 44722107)
    • (2006) Nature Biotechnology , vol.24 , Issue.11 , pp. 1429-1435
    • Berger, M.F.1    Philippakis, A.A.2    Qureshi, A.M.3    He, F.S.4    Estep III, P.W.5    Bulyk, M.L.6
  • 13
    • 84865790047 scopus 로고    scopus 로고
    • An integrated encyclopedia of DNA elements in the human genome
    • The ENCODE Project Consortium in press
    • The ENCODE Project Consortium. 2012. An integrated encyclopedia of DNA elements in the human genome. Nature (in press).
    • (2012) Nature
  • 14
    • 78650747491 scopus 로고    scopus 로고
    • Discovery and characterization of chromatin states for systematic annotation of the human genome
    • Ernst J, Kellis M. 2010. Discovery and characterization of chromatin states for systematic annotation of the human genome. Nat Biotechnol 28: 817-825.
    • (2010) Nat Biotechnol , vol.28 , pp. 817-825
    • Ernst, J.1    Kellis, M.2
  • 19
    • 74249118523 scopus 로고    scopus 로고
    • DNA specificity determinants associate with distinct transcription factor functions
    • doi: 10.1371/journal.pgen.1000778
    • Hollenhorst PC, Chandler KJ, Poulsen RL, Johnson WE, Speck NA, Graves BJ. 2009. DNA specificity determinants associate with distinct transcription factor functions. PLoS Genet 5: e1000778. doi: 10.1371/journal.pgen.1000778.
    • (2009) PLoS Genet , vol.5
    • Hollenhorst, P.C.1    Chandler, K.J.2    Poulsen, R.L.3    Johnson, W.E.4    Speck, N.A.5    Graves, B.J.6
  • 21
    • 79959524146 scopus 로고    scopus 로고
    • A haplotype map of the human genome
    • The International HapMap Consortium
    • The International HapMap Consortium. 2005. A haplotype map of the human genome. Nature 437: 1299-1320.
    • (2005) Nature , vol.437 , pp. 1299-1320
  • 22
    • 35348983887 scopus 로고    scopus 로고
    • A second generation human haplotype map of over 3.1 million SNPs
    • The International HapMap Consortium
    • The International HapMap Consortium. 2007. A second generation human haplotype map of over 3.1 million SNPs. Nature 449: 851-861.
    • (2007) Nature , vol.449 , pp. 851-861
  • 26
    • 57449100870 scopus 로고    scopus 로고
    • Design and analysis of ChIPseq experiments for DNA-binding proteins
    • Kharchenko PV, Tolstorukov MY, Park PJ. 2008. Design and analysis of ChIPseq experiments for DNA-binding proteins. Nat Biotechnol 26: 1351-1359.
    • (2008) Nat Biotechnol , vol.26 , pp. 1351-1359
    • Kharchenko, P.V.1    Tolstorukov, M.Y.2    Park, P.J.3
  • 27
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • doi: 10.1186/gb-2009-10-3-r25
    • Langmead B, Trapnell C, Pop M, Salzberg SL. 2009. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10: R25. doi: 10.1186/gb-2009-10-3-r25.
    • (2009) Genome Biol , vol.10
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 33
    • 58149200952 scopus 로고    scopus 로고
    • UniPROBE: An online database of protein binding microarray data on protein-DNA interactions
    • Newburger DE, Bulyk ML. 2009. UniPROBE: An online database of protein binding microarray data on protein-DNA interactions. Nucleic Acids Res 37: D77-D82.
    • (2009) Nucleic Acids Res , vol.37
    • Newburger, D.E.1    Bulyk, M.L.2
  • 37
    • 79952266465 scopus 로고    scopus 로고
    • Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data
    • Pique-Regi R, Degner JF, Pai AA, Gaffney DJ, Gilad Y, Pritchard JK. 2011. Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data. Genome Res 21: 447-455.
    • (2011) Genome Res , vol.21 , pp. 447-455
    • Pique-Regi, R.1    Degner, J.F.2    Pai, A.A.3    Gaffney, D.J.4    Gilad, Y.5    Pritchard, J.K.6
  • 38
    • 83255164884 scopus 로고    scopus 로고
    • Comprehensive genome-wide protein-DNA interactions detected at single-nucleotide resolution
    • Rhee HS, Pugh BF. 2011. Comprehensive genome-wide protein-DNA interactions detected at single-nucleotide resolution. Cell 147: 1408-1419.
    • (2011) Cell , vol.147 , pp. 1408-1419
    • Rhee, H.S.1    Pugh, B.F.2
  • 42
    • 84865777825 scopus 로고    scopus 로고
    • Linking disease associations with regulatory information in the human genome
    • this issue. doi: 10.1101/gr.136127.111
    • Schaub MA, Boyle AP, Kundaje A, Batzoglou S, Snyder M. 2012. Linking disease associations with regulatory information in the human genome. Genome Res (this issue). doi: 10.1101/gr.136127.111.
    • (2012) Genome Res
    • Schaub, M.A.1    Boyle, A.P.2    Kundaje, A.3    Batzoglou, S.4    Snyder, M.5
  • 44
    • 39049165160 scopus 로고    scopus 로고
    • Efficient and accurate P-value computation for Position Weight Matrices
    • doi: 10.1186/1748-7188-2-15
    • Touzet H, Varré J-S. 2007. Efficient and accurate P-value computation for Position Weight Matrices. Algorithms Mol Biol 2: 15. doi: 10.1186/1748-7188-2-15.
    • (2007) Algorithms Mol Biol , vol.2 , pp. 15
    • Touzet, H.1    Varré, J.-S.2
  • 48
    • 33846112470 scopus 로고    scopus 로고
    • VISTA Enhancer Browser - A database of tissue-specific human enhancers
    • DOI 10.1093/nar/gkl822
    • Visel A, Minovitsky S, Dubchak I, Pennacchio LA. 2007. VISTA Enhancer Browser-a database of tissue-specific human enhancers. Nucleic Acids Res 35: D88-D92. (Pubitemid 46056176)
    • (2007) Nucleic Acids Research , vol.35 , Issue.SUPPL. 1
    • Visel, A.1    Minovitsky, S.2    Dubchak, I.3    Pennacchio, L.A.4
  • 49
    • 84858779229 scopus 로고    scopus 로고
    • HaploReg: A resource for exploring chromatin states, conservation, and regulatory motif alterations within sets of genetically linked variants
    • Ward LD, Kellis M. 2012. HaploReg: A resource for exploring chromatin states, conservation, and regulatory motif alterations within sets of genetically linked variants. Nucleic Acids Res 40: D930-D934.
    • (2012) Nucleic Acids Res , vol.40
    • Ward, L.D.1    Kellis, M.2
  • 51
    • 79951828280 scopus 로고    scopus 로고
    • GABP controls a critical transcription regulatory module that is essential for maintenance and differentiation of hematopoietic stem/progenitor cells
    • Yu S, Cui K, Jothi R, Zhao D-M, Jing X, Zhao K, Xue H-H. 2011. GABP controls a critical transcription regulatory module that is essential for maintenance and differentiation of hematopoietic stem/progenitor cells. Blood 117: 2166-2178.
    • (2011) Blood , vol.117 , pp. 2166-2178
    • Yu, S.1    Cui, K.2    Jothi, R.3    Zhao, D.-M.4    Jing, X.5    Zhao, K.6    Xue, H.-H.7


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