Promise and pitfalls of the Immunochip

Arthritis Research and Therapy

Volumn 13, Issue 1, 2011, Pages

  Cortes, Adrian ^a   Brown, Matthew A ^a  

^a UNIVERSITY OF QUEENSLAND   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

ANKYLOSING SPONDYLITIS; AUTOIMMUNE THYROIDITIS; CAUCASIAN; CELIAC DISEASE; COPY NUMBER VARIATION; CROHN DISEASE; EPIGENETICS; GENE IDENTIFICATION; GENE INTERACTION; GENE LOCUS; GENE MAPPING; GENE REPLICATION; GENETIC ASSOCIATION; GENETIC DISORDER; GENETIC VARIABILITY; GENOTYPE; GENOTYPE ENVIRONMENT INTERACTION; HEALTH CARE COST; HERITABILITY; HUMAN; IMMUNOCHIP; IMMUNOGENETICS; INSULIN DEPENDENT DIABETES MELLITUS; MULTIPLE SCLEROSIS; NOTE; PSORIASIS; RACE DIFFERENCE; RHEUMATOID ARTHRITIS; SAMPLE SIZE; SINGLE NUCLEOTIDE POLYMORPHISM; SYSTEMIC LUPUS ERYTHEMATOSUS; ULCERATIVE COLITIS; CHROMOSOME MAP; DNA MICROARRAY; METHODOLOGY; REVIEW;

CHROMOSOME MAPPING; GENOME-WIDE ASSOCIATION STUDY; HUMANS; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; POLYMORPHISM, SINGLE NUCLEOTIDE;

EID: 79960279940     PISSN: 14786354     EISSN: 14786362     Source Type: Journal    
DOI: 10.1186/ar3204     Document Type: Note

References (9)

1. Manolio TA, Collins FS, Cox NJ, Goldstein DB, Hindorff LA, Hunter DJ, McCarthy MI, Ramos EM, Cardon LR, Chakravarti A, Cho JH, Guttmacher AE, Kong A, Kruglyak L, Mardis E, Rotimi CN, Slatkin M, Valle D, Whittemore AS, Boehnke M, Clark AG, Eichler EE, Gibson G, Haines JL, Mackay TF, McCarroll SA, Visscher PM. Finding the missing heritability of complex diseases. Nature 2009, 461:747-753. 10.1038/nature08494, 2831613, 19812666.
2. Craddock N, Hurles ME, Cardin N, Pearson RD, Plagnol V, Robson S, Vukcevic D, Barnes C, Conrad DF, Giannoulatou E, Holmes C, Marchini JL, Stirrups K, Tobin MD, Wain LV, Yau C, Aerts J, Ahmad T, Andrews TD, Arbury H, Attwood A, Auton A, Ball SG, Balmforth AJ, Barrett JC, Barroso I, Barton A, Bennett AJ, Bhaskar S, Blaszczyk K, et al. Genome-wide association study of CNVs in 16,000 cases of eight common diseases and 3,000 shared controls. Nature 2010, 464:713-720. 10.1038/nature08979, 2892339, 20360734.
3. Kaminsky ZA, Tang T, Wang SC, Ptak C, Oh GH, Wong AH, Feldcamp LA, Virtanen C, Halfvarson J, Tysk C, McRae AF, Visscher PM, Montgomery GW, Gottesman II, Martin NG, Petronis A. DNA methylation profiles in monozygotic and dizygotic twins. Nat Genet 2009, 41:240-245. 10.1038/ng.286, 19151718.
4. Slatkin M. Epigenetic inheritance and the missing heritability problem. Genetics 2009, 182:845-850. 10.1534/genetics.109.102798, 2710163, 19416939.
5. Yang J, Benyamin B, McEvoy BP, Gordon S, Henders AK, Nyholt DR, Madden PA, Heath AC, Martin NG, Montgomery GW, Goddard ME, Visscher PM. Common SNPs explain a large proportion of the heritability for human height. Nat Genet 2010, 42:565-569. 10.1038/ng.608, 20562875.
6. Lango Allen H, Estrada K, Lettre G, Berndt SI, Weedon MN, Rivadeneira F, Willer CJ, Jackson AU, Vedantam S, Raychaudhuri S, Ferreira T, Wood AR, Weyant RJ, Segre AV, Speliotes EK, Wheeler E, Soranzo N, Park JH, Yang J, Gudbjartsson D, Heard-Costa NL, Randall JC, Qi L, Vernon Smith A, Magi R, Pastinen T, Liang L, Heid IM, Luan J, et al. Hundreds of variants clustered in genomic loci and biological pathways affect human height. Nature 2010, 467:832-838. 10.1038/nature09410, 2955183, 20881960.
7. Keating BJ, Tischfield S, Murray SS, Bhangale T, Price TS, Glessner JT, Galver L, Barrett JC, Grant SF, Farlow DN, Chandrupatla HR, Hansen M, Ajmal S, Papanicolaou GJ, Guo Y, Li M, Derohannessian S, de Bakker PI, Bailey SD, Montpetit A, Edmondson AC, Taylor K, Gai X, Wang SS, Fornage M, Shaikh T, Groop L, Boehnke M, Hall AS, Hattersley AT, et al. Concept, design and implementation of a cardiovascular gene-centric 50 k SNP array for large-scale genomic association studies. PLoS One 2008, 3:e3583. 10.1371/journal.pone.0003583, 2571995, 18974833.
8. Wellcome Trust Case-Control Consortium 2. , http://www.wtccc.org.uk/ccc2/wtccc2_studies.shtml
9. Leslie S, Donnelly P, McVean G. A statistical method for predicting classical HLA alleles from SNP data. Am J Hum Genet 2008, 82:48-56. 10.1016/j.ajhg.2007.09.001, 2253983, 18179884.