-
1
-
-
78651272522
-
YEASTRACT: Providing a programmatic access to curated transcriptional regulatory associations in Saccharomyces cerevisiae through a web services interface
-
Abdulrehman, D., P. T. Monteiro, M. C. Teixeira, N. P. Mira, A. B. Lourenco et al., 2011 YEASTRACT: providing a programmatic access to curated transcriptional regulatory associations in Saccharomyces cerevisiae through a web services interface. Nucleic Acids Res. 39: D136-D140.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. D136-D140
-
-
Abdulrehman, D.1
Monteiro, P.T.2
Teixeira, M.C.3
Mira, N.P.4
Lourenco, A.B.5
-
2
-
-
0030021524
-
TOR controls translation initiation and early G1 progression in yeast
-
Barbet, N. C., U. Schneider, S. B. Helliwell, I. Stansfield, M. F. Tuite et al., 1996 TOR controls translation initiation and early G1 progression in yeast. Mol. Biol. Cell 7: 25-42.
-
(1996)
Mol. Biol. Cell
, vol.7
, pp. 25-42
-
-
Barbet, N.C.1
Schneider, U.2
Helliwell, S.B.3
Stansfield, I.4
Tuite, M.F.5
-
3
-
-
0033540030
-
The TOR signalling pathway controls nuclear localization of nutrient-regulated transcription factors
-
Beck, T., and M. N. Hall, 1999 The TOR signalling pathway controls nuclear localization of nutrient-regulated transcription factors. Nature 402: 689-692.
-
(1999)
Nature
, vol.402
, pp. 689-692
-
-
Beck, T.1
Hall, M.N.2
-
4
-
-
3142665525
-
GOstat: Find statistically overrepresented Gene Ontologies within a group of genes
-
Beissbarth, T., and T. P. Speed, 2004 GOstat: find statistically overrepresented Gene Ontologies within a group of genes. Bioinformatics 20: 1464-1465.
-
(2004)
Bioinformatics
, vol.20
, pp. 1464-1465
-
-
Beissbarth, T.1
Speed, T.P.2
-
5
-
-
69749113579
-
The Vam6 GEF controls TORC1 by activating the EGO complex
-
Binda, M., M. P. Peli-Gulli, G. Bonfils, N. Panchaud, J. Urban et al., 2009 The Vam6 GEF controls TORC1 by activating the EGO complex. Mol. Cell 35: 563-573.
-
(2009)
Mol. Cell
, vol.35
, pp. 563-573
-
-
Binda, M.1
Peli-Gulli, M.P.2
Bonfils, G.3
Panchaud, N.4
Urban, J.5
-
6
-
-
0034699382
-
A chemical switch for inhibitor-sensitive alleles of any protein kinase
-
Bishop, A. C., J. A. Ubersax, D. T. Petsch, D. P. Matheos, N. S. Gray et al., 2000 A chemical switch for inhibitor-sensitive alleles of any protein kinase. Nature 407: 395-401.
-
(2000)
Nature
, vol.407
, pp. 395-401
-
-
Bishop, A.C.1
Ubersax, J.A.2
Petsch, D.T.3
Matheos, D.P.4
Gray, N.S.5
-
7
-
-
84859704385
-
Leucyl-tRNA synthetase controls TORC1 via the EGO complex
-
Bonfils, G., M. Jaquenoud, S. Bontron, C. Ostrowicz, C. Ungermann et al., 2012 Leucyl-tRNA synthetase controls TORC1 via the EGO complex. Mol. Cell 46: 105-110.
-
(2012)
Mol. Cell
, vol.46
, pp. 105-110
-
-
Bonfils, G.1
Jaquenoud, M.2
Bontron, S.3
Ostrowicz, C.4
Ungermann, C.5
-
8
-
-
77953077420
-
A global protein kinase and phosphatase interaction network in yeast
-
Breitkreutz, A., H. Choi, J. R. Sharom, L. Boucher, V. Neduva et al., 2010 A global protein kinase and phosphatase interaction network in yeast. Science 328: 1043-1046.
-
(2010)
Science
, vol.328
, pp. 1043-1046
-
-
Breitkreutz, A.1
Choi, H.2
Sharom, J.R.3
Boucher, L.4
Neduva, V.5
-
9
-
-
84866076360
-
Nutritional control of growth and development in yeast
-
Broach, J. R., 2012 Nutritional control of growth and development in yeast. Genetics 192: 73-105.
-
(2012)
Genetics
, vol.192
, pp. 73-105
-
-
Broach, J.R.1
-
10
-
-
77956055139
-
Analysis of gene function using DNA microarrays
-
Capaldi, A. P., 2010 Analysis of gene function using DNA microarrays. Methods Enzymol. 470: 3-17.
-
(2010)
Methods Enzymol
, vol.470
, pp. 3-17
-
-
Capaldi, A.P.1
-
11
-
-
84984933073
-
Structure and function of a transcriptional network activated by the MAPK Hog1
-
Capaldi, A. P., T. Kaplan, Y. Liu, N. Habib, A. Regev et al., 2008 Structure and function of a transcriptional network activated by the MAPK Hog1. Nat. Genet. 40: 1300-1306.
-
(2008)
Nat. Genet
, vol.40
, pp. 1300-1306
-
-
Capaldi, A.P.1
Kaplan, T.2
Liu, Y.3
Habib, N.4
Regev, A.5
-
12
-
-
0033573016
-
The TOR signaling cascade regulates gene expression in response to nutrients
-
Cardenas, M. E., N. S. Cutler, M. C. Lorenz, C. J. Di Como, and J. Heitman, 1999 The TOR signaling cascade regulates gene expression in response to nutrients. Genes Dev. 13: 3271-3279.
-
(1999)
Genes Dev
, vol.13
, pp. 3271-3279
-
-
Cardenas, M.E.1
Cutler, N.S.2
Lorenz, M.C.3
Di Como, C.J.4
Heitman, J.5
-
13
-
-
1642266344
-
Gln3 phosphorylation and intracellular localization in nutrient limitation and starvation differ from those generated by rapamycin inhibition of Tor1/2 in Saccharomyces cerevisiae
-
Cox, K. H., A. Kulkarni, J. J. Tate, and T. G. Cooper, 2004 Gln3 phosphorylation and intracellular localization in nutrient limitation and starvation differ from those generated by rapamycin inhibition of Tor1/2 in Saccharomyces cerevisiae. J. Biol. Chem. 279: 10270-10278.
-
(2004)
J. Biol. Chem
, vol.279
, pp. 10270-10278
-
-
Cox, K.H.1
Kulkarni, A.2
Tate, J.J.3
Cooper, T.G.4
-
14
-
-
0035860714
-
The GATA transcription factors GLN3 and GAT1 link TOR to salt stress in Saccharomyces cerevisiae
-
Crespo, J. L., K. Daicho, T. Ushimaru, and M. N. Hall, 2001 The GATA transcription factors GLN3 and GAT1 link TOR to salt stress in Saccharomyces cerevisiae. J. Biol. Chem. 276: 34441-34444.
-
(2001)
J. Biol. Chem
, vol.276
, pp. 34441-34444
-
-
Crespo, J.L.1
Daicho, K.2
Ushimaru, T.3
Hall, M.N.4
-
15
-
-
0037076314
-
The TOR-controlled transcription activators GLN3, RTG1, and RTG3 are regulated in response to intracellular levels of glutamine
-
Crespo, J. L., T. Powers, B. Fowler, and M. N. Hall, 2002 The TOR-controlled transcription activators GLN3, RTG1, and RTG3 are regulated in response to intracellular levels of glutamine. Proc. Natl. Acad. Sci. USA 99: 6784-6789.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 6784-6789
-
-
Crespo, J.L.1
Powers, T.2
Fowler, B.3
Hall, M.N.4
-
16
-
-
0035941266
-
The Npr1 kinase controls biosynthetic and endocytic sorting of the yeast Gap1 permease
-
De Craene, J. O., O. Soetens, and B. Andre, 2001 The Npr1 kinase controls biosynthetic and endocytic sorting of the yeast Gap1 permease. J. Biol. Chem. 276: 43939-43948.
-
(2001)
J. Biol. Chem
, vol.276
, pp. 43939-43948
-
-
De Craene, J.O.1
Soetens, O.2
Andre, B.3
-
17
-
-
3142756502
-
Open source clustering software
-
de Hoon, M. J., S. Imoto, J. Nolan, and S. Miyano, 2004 Open source clustering software. Bioinformatics 20: 1453-1454.
-
(2004)
Bioinformatics
, vol.20
, pp. 1453-1454
-
-
De Hoon, M.J.1
Imoto, S.2
Nolan, J.3
Miyano, S.4
-
18
-
-
28644434811
-
A dual role for PP1 in shaping the Msn2-dependent transcriptional response to glucose starvation
-
De Wever, V., W. Reiter, A. Ballarini, G. Ammerer, and C. Brocard, 2005 A dual role for PP1 in shaping the Msn2-dependent transcriptional response to glucose starvation. EMBO J. 24: 4115-4123.
-
(2005)
EMBO J
, vol.24
, pp. 4115-4123
-
-
De Wever, V.1
Reiter, W.2
Ballarini, A.3
Ammerer, G.4
Brocard, C.5
-
19
-
-
0029808294
-
Nutrients, via the Tor proteins, stimulate the association of Tap42 with type 2A phosphatases
-
Di Como, C. J., and K. T. Arndt, 1996 Nutrients, via the Tor proteins, stimulate the association of Tap42 with type 2A phosphatases. Genes Dev. 10: 1904-1916.
-
(1996)
Genes Dev
, vol.10
, pp. 1904-1916
-
-
Di Como, C.J.1
Arndt, K.T.2
-
20
-
-
79957971892
-
A conserved coatomer-related complex containing Sec13 and Seh1 dynamically associates with the vacuole in Saccharomyces cerevisiae
-
Dokudovskaya, S., F. Waharte, A. Schlessinger, U. Pieper, D. P. Devos et al., 2011 A conserved coatomer-related complex containing Sec13 and Seh1 dynamically associates with the vacuole in Saccharomyces cerevisiae. Mol. Cell. Proteomics 10: M110.006478.
-
(2011)
Mol. Cell. Proteomics
, vol.10
, Issue.M110
, pp. 006478
-
-
Dokudovskaya, S.1
Waharte, F.2
Schlessinger, A.3
Pieper, U.4
Devos, D.P.5
-
21
-
-
84864931233
-
Glutaminolysis activates Rag-mTORC1 signaling
-
Duran, R. V., W. Oppliger, A. M. Robitaille, L. Heiserich, R. Skendaj et al., 2012 Glutaminolysis activates Rag-mTORC1 signaling. Mol. Cell 47: 349-358.
-
(2012)
Mol. Cell
, vol.47
, pp. 349-358
-
-
Duran, R.V.1
Oppliger, W.2
Robitaille, A.M.3
Heiserich, L.4
Skendaj, R.5
-
22
-
-
17344381954
-
Multiple roles of Tap42 in mediating rapamycin-induced transcriptional changes in yeast
-
Duvel, K., A. Santhanam, S. Garrett, L. Schneper, and J. R. Broach, 2003 Multiple roles of Tap42 in mediating rapamycin-induced transcriptional changes in yeast. Mol. Cell 11: 1467-1478.
-
(2003)
Mol. Cell
, vol.11
, pp. 1467-1478
-
-
Duvel, K.1
Santhanam, A.2
Garrett, S.3
Schneper, L.4
Broach, J.R.5
-
23
-
-
0033637153
-
Genomic expression programs in the response of yeast cells to environmental changes
-
Gasch, A. P., P. T. Spellman, C. M. Kao, O. Carmel-Harel, M. B. Eisen et al., 2000 Genomic expression programs in the response of yeast cells to environmental changes. Mol. Biol. Cell 11: 4241-4257.
-
(2000)
Mol. Biol. Cell
, vol.11
, pp. 4241-4257
-
-
Gasch, A.P.1
Spellman, P.T.2
Kao, C.M.3
Carmel-Harel, O.4
Eisen, M.B.5
-
24
-
-
84455192426
-
Nitrogenresponsive regulation of GATA protein family activators Gln3 and Gat1 occurs by two distinct pathways, one inhibited by rapamycin and the other by methionine sulfoximine
-
Georis, I., J. J. Tate, T. G. Cooper, and E. Dubois, 2011 Nitrogenresponsive regulation of GATA protein family activators Gln3 and Gat1 occurs by two distinct pathways, one inhibited by rapamycin and the other by methionine sulfoximine. J. Biol. Chem. 286: 44897-44912.
-
(2011)
J. Biol. Chem
, vol.286
, pp. 44897-44912
-
-
Georis, I.1
Tate, J.J.2
Cooper, T.G.3
Dubois, E.4
-
25
-
-
0032518996
-
Nuclear localization of the C2H2 zinc finger protein Msn2p is regulated by stress and protein kinase A activity
-
Gorner, W., E. Durchschlag, M. T. Martinez-Pastor, F. Estruch, G. Ammerer et al., 1998 Nuclear localization of the C2H2 zinc finger protein Msn2p is regulated by stress and protein kinase A activity. Genes Dev. 12: 586-597.
-
(1998)
Genes Dev
, vol.12
, pp. 586-597
-
-
Gorner, W.1
Durchschlag, E.2
Martinez-Pastor, M.T.3
Estruch, F.4
Ammerer, G.5
-
26
-
-
42949139481
-
AMPK phosphorylation of raptor mediates a metabolic checkpoint
-
Gwinn, D. M., D. B. Shackelford, D. F. Egan, M. M. Mihaylova, A. Mery et al., 2008 AMPK phosphorylation of raptor mediates a metabolic checkpoint. Mol. Cell 30: 214-226.
-
(2008)
Mol. Cell
, vol.30
, pp. 214-226
-
-
Gwinn, D.M.1
Shackelford, D.B.2
Egan, D.F.3
Mihaylova, M.M.4
Mery, A.5
-
27
-
-
84862777407
-
Leucyl-tRNA synthetase is an intracellular leucine sensor for the mTORC1-signaling pathway
-
Han, J. M., S. J. Jeong, M. C. Park, G. Kim, N. H. Kwon et al., 2012 Leucyl-tRNA synthetase is an intracellular leucine sensor for the mTORC1-signaling pathway. Cell 149: 410-424.
-
(2012)
Cell
, vol.149
, pp. 410-424
-
-
Han, J.M.1
Jeong, S.J.2
Park, M.C.3
Kim, G.4
Kwon, N.H.5
-
28
-
-
0033592983
-
Rapamycin-modulated transcription defines the subset of nutrient-sensitive signaling pathways directly controlled by the Tor proteins
-
Hardwick, J. S., F. G. Kuruvilla, J. K. Tong, A. F. Shamji, and S. L. Schreiber, 1999 Rapamycin-modulated transcription defines the subset of nutrient-sensitive signaling pathways directly controlled by the Tor proteins. Proc. Natl. Acad. Sci. USA 96: 14866-14870.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 14866-14870
-
-
Hardwick, J.S.1
Kuruvilla, F.G.2
Tong, J.K.3
Shamji, A.F.4
Schreiber, S.L.5
-
29
-
-
38449110592
-
SNF1/AMPK pathways in yeast
-
Hedbacker, K., and M. Carlson, 2008 SNF1/AMPK pathways in yeast. Front. Biosci. 13: 2408-2420.
-
(2008)
Front. Biosci
, vol.13
, pp. 2408-2420
-
-
Hedbacker, K.1
Carlson, M.2
-
30
-
-
0025776523
-
Targets for cell cycle arrest by the immunosuppressant rapamycin in yeast
-
Heitman, J., N. R. Movva, and M. N. Hall, 1991 Targets for cell cycle arrest by the immunosuppressant rapamycin in yeast. Science 253: 905-909.
-
(1991)
Science
, vol.253
, pp. 905-909
-
-
Heitman, J.1
Movva, N.R.2
Hall, M.N.3
-
31
-
-
0028137771
-
TOR1 and TOR2 are structurally and functionally similar but not identical phosphatidylinositol kinase homologues in yeast
-
Helliwell, S. B., P. Wagner, J. Kunz, M. Deuter-Reinhard, R. Henriquez et al., 1994 TOR1 and TOR2 are structurally and functionally similar but not identical phosphatidylinositol kinase homologues in yeast. Mol. Biol. Cell 5: 105-118.
-
(1994)
Mol. Biol. Cell
, vol.5
, pp. 105-118
-
-
Helliwell, S.B.1
Wagner, P.2
Kunz, J.3
Deuter-Reinhard, M.4
Henriquez, R.5
-
32
-
-
79958696694
-
The mTOR-regulated phosphoproteome reveals a mechanism of mTORC1-mediated inhibition of growth factor signaling
-
Hsu, P. P., S. A. Kang, J. Rameseder, Y. Zhang, K. A. Ottina et al., 2011 The mTOR-regulated phosphoproteome reveals a mechanism of mTORC1-mediated inhibition of growth factor signaling. Science 332: 1317-1322.
-
(2011)
Science
, vol.332
, pp. 1317-1322
-
-
Hsu, P.P.1
Kang, S.A.2
Rameseder, J.3
Zhang, Y.4
Ottina, K.A.5
-
33
-
-
69249240179
-
Characterization of the rapamycin-sensitive phosphoproteome reveals that Sch9 is a central coordinator of protein synthesis
-
Huber, A., B. Bodenmiller, A. Uotila, M. Stahl, S. Wanka et al., 2009 Characterization of the rapamycin-sensitive phosphoproteome reveals that Sch9 is a central coordinator of protein synthesis. Genes Dev. 23: 1929-1943.
-
(2009)
Genes Dev
, vol.23
, pp. 1929-1943
-
-
Huber, A.1
Bodenmiller, B.2
Uotila, A.3
Stahl, M.4
Wanka, S.5
-
34
-
-
79961029774
-
Sch9 regulates ribosome biogenesis via Stb3, Dot6 and Tod6 and the histone deacetylase complex RPD3L
-
Huber, A., S. L. French, H. Tekotte, S. Yerlikaya, M. Stahl et al., 2011 Sch9 regulates ribosome biogenesis via Stb3, Dot6 and Tod6 and the histone deacetylase complex RPD3L. EMBO J. 30: 3052-3064.
-
(2011)
EMBO J
, vol.30
, pp. 3052-3064
-
-
Huber, A.1
French, S.L.2
Tekotte, H.3
Yerlikaya, S.4
Stahl, M.5
-
35
-
-
0036713778
-
TSC2 is phosphorylated and inhibited by Akt and suppresses mTOR signalling
-
Inoki, K., Y. Li, T. Zhu, J. Wu, and K. L. Guan, 2002 TSC2 is phosphorylated and inhibited by Akt and suppresses mTOR signalling. Nat. Cell Biol. 4: 648-657.
-
(2002)
Nat. Cell Biol
, vol.4
, pp. 648-657
-
-
Inoki, K.1
Li, Y.2
Zhu, T.3
Wu, J.4
Guan, K.L.5
-
36
-
-
0345167800
-
TSC2 mediates cellular energy response to control cell growth and survival
-
Inoki, K., T. Zhu, and K. L. Guan, 2003 TSC2 mediates cellular energy response to control cell growth and survival. Cell 115: 577-590.
-
(2003)
Cell
, vol.115
, pp. 577-590
-
-
Inoki, K.1
Zhu, T.2
Guan, K.L.3
-
37
-
-
0035930339
-
TIP41 interacts with TAP42 and negatively regulates the TOR signaling pathway
-
Jacinto, E., B. Guo, K. T. Arndt, T. Schmelzle, and M. N. Hall, 2001 TIP41 interacts with TAP42 and negatively regulates the TOR signaling pathway. Mol. Cell 8: 1017-1026.
-
(2001)
Mol. Cell
, vol.8
, pp. 1017-1026
-
-
Jacinto, E.1
Guo, B.2
Arndt, K.T.3
Schmelzle, T.4
Hall, M.N.5
-
38
-
-
0033577745
-
Tor proteins and protein phosphatase 2A reciprocally regulate Tap42 in controlling cell growth in yeast
-
Jiang, Y., and J. R. Broach, 1999 Tor proteins and protein phosphatase 2A reciprocally regulate Tap42 in controlling cell growth in yeast. EMBO J. 18: 2782-2792.
-
(1999)
EMBO J
, vol.18
, pp. 2782-2792
-
-
Jiang, Y.1
Broach, J.R.2
-
39
-
-
5444256434
-
A dynamic transcriptional network communicates growth potential to ribosome synthesis and critical cell size
-
Jorgensen, P., I. Rupes, J. R. Sharom, L. Schneper, J. R. Broach et al., 2004 A dynamic transcriptional network communicates growth potential to ribosome synthesis and critical cell size. Genes Dev. 18: 2491-2505.
-
(2004)
Genes Dev
, vol.18
, pp. 2491-2505
-
-
Jorgensen, P.1
Rupes, I.2
Sharom, J.R.3
Schneper, L.4
Broach, J.R.5
-
40
-
-
75749090429
-
Tor directly controls the Atg1 kinase complex to regulate autophagy
-
Kamada, Y., K. Yoshino, C. Kondo, T. Kawamata, N. Oshiro et al., 2010 Tor directly controls the Atg1 kinase complex to regulate autophagy. Mol. Cell. Biol. 30: 1049-1058.
-
(2010)
Mol. Cell. Biol
, vol.30
, pp. 1049-1058
-
-
Kamada, Y.1
Yoshino, K.2
Kondo, C.3
Kawamata, T.4
Oshiro, N.5
-
41
-
-
67649827419
-
Regulation of RNA polymerase III transcription involves SCH9-dependent and SCH9-independent branches of the target of rapamycin (TOR) pathway
-
Lee, J., R. D. Moir, and I. M. Willis, 2009 Regulation of RNA polymerase III transcription involves SCH9-dependent and SCH9-independent branches of the target of rapamycin (TOR) pathway. J. Biol. Chem. 284: 12604-12608.
-
(2009)
J. Biol. Chem
, vol.284
, pp. 12604-12608
-
-
Lee, J.1
Moir, R.D.2
Willis, I.M.3
-
42
-
-
62549119989
-
Sfp1 interaction with TORC1 and Mrs6 reveals feedback regulation on TOR signaling
-
Lempiainen, H., A. Uotila, J. Urban, I. Dohnal, G. Ammerer et al., 2009 Sfp1 interaction with TORC1 and Mrs6 reveals feedback regulation on TOR signaling. Mol. Cell 33: 704-716.
-
(2009)
Mol. Cell
, vol.33
, pp. 704-716
-
-
Lempiainen, H.1
Uotila, A.2
Urban, J.3
Dohnal, I.4
Ammerer, G.5
-
43
-
-
83455179434
-
Regulation of cell wall biogenesis in Saccharomyces cerevisiae: The cell wall integrity signaling pathway
-
Levin, D. E., 2011 Regulation of cell wall biogenesis in Saccharomyces cerevisiae: the cell wall integrity signaling pathway. Genetics 189: 1145-1175.
-
(2011)
Genetics
, vol.189
, pp. 1145-1175
-
-
Levin, D.E.1
-
44
-
-
34548838840
-
Stb3 binds to ribosomal RNA processing element motifs that control transcriptional responses to growth in Saccharomyces cerevisiae
-
Liko, D., M. G. Slattery, and W. Heideman, 2007 Stb3 binds to ribosomal RNA processing element motifs that control transcriptional responses to growth in Saccharomyces cerevisiae. J. Biol. Chem. 282: 26623-26628.
-
(2007)
J. Biol. Chem
, vol.282
, pp. 26623-26628
-
-
Liko, D.1
Slattery, M.G.2
Heideman, W.3
-
45
-
-
73949150346
-
Protein kinase A and TORC1 activate genes for ribosomal biogenesis by inactivating repressors encoded by Dot6 and its homolog Tod6
-
Lippman, S. I., and J. R. Broach, 2009 Protein kinase A and TORC1 activate genes for ribosomal biogenesis by inactivating repressors encoded by Dot6 and its homolog Tod6. Proc. Natl. Acad. Sci. USA 106: 19928-19933.
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 19928-19933
-
-
Lippman, S.I.1
Broach, J.R.2
-
46
-
-
83455177213
-
Target of rapamycin (TOR) in nutrient signaling and growth control
-
Loewith, R., and M. N. Hall, 2011 Target of rapamycin (TOR) in nutrient signaling and growth control. Genetics 189: 1177-1201.
-
(2011)
Genetics
, vol.189
, pp. 1177-1201
-
-
Loewith, R.1
Hall, M.N.2
-
47
-
-
0036753494
-
Two TOR complexes, only one of which is rapamycin sensitive, have distinct roles in cell growth control. Mol
-
Loewith, R., E. Jacinto, S. Wullschleger, A. Lorberg, J. L. Crespo et al., 2002 Two TOR complexes, only one of which is rapamycin sensitive, have distinct roles in cell growth control. Mol. Cell 10: 457-468.
-
(2002)
Cell
, vol.10
, pp. 457-468
-
-
Loewith, R.1
Jacinto, E.2
Wullschleger, S.3
Lorberg, A.4
Crespo, J.L.5
-
48
-
-
5144229125
-
Sfp1 is a stress-and nutrient-sensitive regulator of ribosomal protein gene expression
-
Marion, R. M., A. Regev, E. Segal, Y. Barash, D. Koller et al., 2004 Sfp1 is a stress-and nutrient-sensitive regulator of ribosomal protein gene expression. Proc. Natl. Acad. Sci. USA 101: 14315-14322.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 14315-14322
-
-
Marion, R.M.1
Regev, A.2
Segal, E.3
Barash, Y.4
Koller, D.5
-
49
-
-
11144273952
-
TOR regulates ribosomal protein gene expression via PKA and the Forkhead transcription factor FHL1
-
Martin, D. E., A. Soulard, and M. N. Hall, 2004 TOR regulates ribosomal protein gene expression via PKA and the Forkhead transcription factor FHL1. Cell 119: 969-979.
-
(2004)
Cell
, vol.119
, pp. 969-979
-
-
Martin, D.E.1
Soulard, A.2
Hall, M.N.3
-
50
-
-
38549135468
-
YEASTRACT-DISCOVERER: New tools to improve the analysis of transcriptional regulatory associations in Saccharomyces cerevisiae
-
Monteiro, P. T., N. D. Mendes, M. C. Teixeira, S. d’Orey, S. Tenreiro et al., 2008 YEASTRACT-DISCOVERER: new tools to improve the analysis of transcriptional regulatory associations in Saccharomyces cerevisiae. Nucleic Acids Res. 36: D132-D136.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. D132-D136
-
-
Monteiro, P.T.1
Mendes, N.D.2
Teixeira, M.C.3
D’orey, S.4
Tenreiro, S.5
-
51
-
-
67651235863
-
A genome-wide screen for regulators of TORC1 in response to amino acid starvation reveals a conserved Npr2/3 complex
-
Neklesa, T. K., and R. W. Davis, 2009 A genome-wide screen for regulators of TORC1 in response to amino acid starvation reveals a conserved Npr2/3 complex. PLoS Genet. 5: e1000515.
-
(2009)
PLoS Genet
, vol.5
-
-
Neklesa, T.K.1
Davis, R.W.2
-
52
-
-
84878353147
-
Amino acid deprivation inhibits TORC1 through a GTPase-activating protein complex for the Rag family GTPase
-
6: ra42
-
Panchaud, N., M. P. Peli-Gulli, and C. De Virgilio, 2013 Amino acid deprivation inhibits TORC1 through a GTPase-activating protein complex for the Rag family GTPase Gtr1. Sci. Signal. 6: ra42.
-
(2013)
Gtr1. Sci. Signal
-
-
Panchaud, N.1
Peli-Gulli, M.P.2
De Virgilio, C.3
-
53
-
-
84879583718
-
Noise and interlocking signaling pathways promote distinct transcription factor dynamics in response to different stresses
-
Petrenko, N., R. V. Chereji, M. N. McClean, A. V. Morozov, and J. R. Broach, 2013 Noise and interlocking signaling pathways promote distinct transcription factor dynamics in response to different stresses. Mol. Biol. Cell 24: 2045-2057.
-
(2013)
Mol. Biol. Cell
, vol.24
, pp. 2045-2057
-
-
Petrenko, N.1
Chereji, R.V.2
McClean, M.N.3
Morozov, A.V.4
Broach, J.R.5
-
54
-
-
0032915417
-
Regulation of ribosome biogenesis by the rapamycin-sensitive TOR-signaling pathway in Saccharomyces cerevisiae
-
Powers, T., and P. Walter, 1999 Regulation of ribosome biogenesis by the rapamycin-sensitive TOR-signaling pathway in Saccharomyces cerevisiae. Mol. Biol. Cell 10: 987-1000.
-
(1999)
Mol. Biol. Cell
, vol.10
, pp. 987-1000
-
-
Powers, T.1
Walter, P.2
-
55
-
-
84873880352
-
Gln3 mutations dissociate responses to nitrogen limitation (nitrogen catabolite repression) and rapamycin inhibition of TorC1
-
Rai, R., J. J. Tate, D. R. Nelson, and T. G. Cooper, 2013 Gln3 mutations dissociate responses to nitrogen limitation (nitrogen catabolite repression) and rapamycin inhibition of TorC1. J. Biol. Chem. 288: 2789-2804.
-
(2013)
J. Biol. Chem
, vol.288
, pp. 2789-2804
-
-
Rai, R.1
Tate, J.J.2
Nelson, D.R.3
Cooper, T.G.4
-
56
-
-
45849105156
-
The Rag GTPases bind raptor and mediate amino acid signaling to mTORC1
-
Sancak, Y., T. R. Peterson, Y. D. Shaul, R. A. Lindquist, C. C. Thoreen et al., 2008 The Rag GTPases bind raptor and mediate amino acid signaling to mTORC1. Science 320: 1496-1501.
-
(2008)
Science
, vol.320
, pp. 1496-1501
-
-
Sancak, Y.1
Peterson, T.R.2
Shaul, Y.D.3
Lindquist, R.A.4
Thoreen, C.C.5
-
57
-
-
77951768486
-
Ragulator-Rag complex targets mTORC1 to the lysosomal surface and is necessary for its activation by amino acids
-
Sancak, Y., L. Bar-Peled, R. Zoncu, A. L. Markhard, S. Nada et al., 2010 Ragulator-Rag complex targets mTORC1 to the lysosomal surface and is necessary for its activation by amino acids. Cell 141: 290-303.
-
(2010)
Cell
, vol.141
, pp. 290-303
-
-
Sancak, Y.1
Bar-Peled, L.2
Zoncu, R.3
Markhard, A.L.4
Nada, S.5
-
58
-
-
6344237317
-
PP2A phosphatase activity is required for stress and Tor kinase regulation of yeast stress response factor Msn2p. Eukaryot
-
Santhanam, A., A. Hartley, K. Duvel, J. R. Broach, and S. Garrett, 2004 PP2A phosphatase activity is required for stress and Tor kinase regulation of yeast stress response factor Msn2p. Eukaryot. Cell 3: 1261-1271.
-
(2004)
Cell
, vol.3
, pp. 1261-1271
-
-
Santhanam, A.1
Hartley, A.2
Duvel, K.3
Broach, J.R.4
Garrett, S.5
-
59
-
-
11144244771
-
Growth-regulated recruitment of the essential yeast ribosomal protein gene activator Ifh1
-
Schawalder, S. B., M. Kabani, I. Howald, U. Choudhury, M. Werner et al., 2004 Growth-regulated recruitment of the essential yeast ribosomal protein gene activator Ifh1. Nature 432: 1058-1061.
-
(2004)
Nature
, vol.432
, pp. 1058-1061
-
-
Schawalder, S.B.1
Kabani, M.2
Howald, I.3
Choudhury, U.4
Werner, M.5
-
60
-
-
0032403058
-
The TOR nutrient signalling pathway phosphorylates NPR1 and inhibits turnover of the tryptophan permease
-
Schmidt, A., T. Beck, A. Koller, J. Kunz, and M. N. Hall, 1998 The TOR nutrient signalling pathway phosphorylates NPR1 and inhibits turnover of the tryptophan permease. EMBO J. 17: 6924-6931.
-
(1998)
EMBO J
, vol.17
, pp. 6924-6931
-
-
Schmidt, A.1
Beck, T.2
Koller, A.3
Kunz, J.4
Hall, M.N.5
-
61
-
-
78649348967
-
Regulation of the mTOR complex 1 pathway by nutrients, growth factors, and stress
-
Sengupta, S., T. R. Peterson, and D. M. Sabatini, 2010 Regulation of the mTOR complex 1 pathway by nutrients, growth factors, and stress. Mol. Cell 40: 310-322.
-
(2010)
Mol. Cell
, vol.40
, pp. 310-322
-
-
Sengupta, S.1
Peterson, T.R.2
Sabatini, D.M.3
-
62
-
-
68949184717
-
TORC1 controls degradation of the transcription factor Stp1, a key effector of the SPS amino-acid-sensing pathway in Saccharomyces cerevisiae
-
Shin, C. S., S. Y. Kim, and W. K. Huh, 2009 TORC1 controls degradation of the transcription factor Stp1, a key effector of the SPS amino-acid-sensing pathway in Saccharomyces cerevisiae. J. Cell Sci. 122: 2089-2099.
-
(2009)
J. Cell Sci
, vol.122
, pp. 2089-2099
-
-
Shin, C.S.1
Kim, S.Y.2
Huh, W.K.3
-
63
-
-
84884544927
-
Five conditions commonly used to down-regulate tor complex 1 generate different physiological situations exhibiting distinct requirements and outcomes
-
Tate, J. J., and T. G. Cooper, 2013 Five conditions commonly used to down-regulate tor complex 1 generate different physiological situations exhibiting distinct requirements and outcomes. J. Biol. Chem. 288: 27243-27262.
-
(2013)
J. Biol. Chem
, vol.288
, pp. 27243-27262
-
-
Tate, J.J.1
Cooper, T.G.2
-
64
-
-
59049104862
-
Rapamycin-induced Gln3 dephosphorylation is insufficient for nuclear localization: Sit4 and PP2A phosphatases are regulated and function differently
-
Tate, J. J., I. Georis, A. Feller, E. Dubois, and T. G. Cooper, 2009 Rapamycin-induced Gln3 dephosphorylation is insufficient for nuclear localization: Sit4 and PP2A phosphatases are regulated and function differently. J. Biol. Chem. 284: 2522-2534.
-
(2009)
J. Biol. Chem
, vol.284
, pp. 2522-2534
-
-
Tate, J.J.1
Georis, I.2
Feller, A.3
Dubois, E.4
Cooper, T.G.5
-
65
-
-
33644873683
-
The YEASTRACT database: A tool for the analysis of transcription regulatory associations in Saccharomyces cerevisiae
-
Teixeira, M. C., P. Monteiro, P. Jain, S. Tenreiro, A. R. Fernandes et al., 2006 The YEASTRACT database: a tool for the analysis of transcription regulatory associations in Saccharomyces cerevisiae. Nucleic Acids Res. 34: D446-D451.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. D446-D451
-
-
Teixeira, M.C.1
Monteiro, P.2
Jain, P.3
Tenreiro, S.4
Fernandes, A.R.5
-
66
-
-
84891806965
-
The YEASTRACT database: An upgraded information system for the analysis of gene and genomic transcription regulation in Saccharomyces cerevisiae
-
Teixeira, M. C., P. T. Monteiro, J. F. Guerreiro, J. P. Goncalves, N. P. Mira et al., 2014 The YEASTRACT database: an upgraded information system for the analysis of gene and genomic transcription regulation in Saccharomyces cerevisiae. Nucleic Acids Res. 42: D161-D166.
-
(2014)
Nucleic Acids Res
, vol.42
, pp. D161-D166
-
-
Teixeira, M.C.1
Monteiro, P.T.2
Guerreiro, J.F.3
Goncalves, J.P.4
Mira, N.P.5
-
67
-
-
0036923835
-
Maf1 is an essential mediator of diverse signals that repress RNA polymerase III transcription
-
Upadhya, R., J. Lee, and I. M. Willis, 2002 Maf1 is an essential mediator of diverse signals that repress RNA polymerase III transcription. Mol. Cell 10: 1489-1494.
-
(2002)
Mol. Cell
, vol.10
, pp. 1489-1494
-
-
Upadhya, R.1
Lee, J.2
Willis, I.M.3
-
68
-
-
34249813098
-
Sch9 is a major target of TORC1 in Saccharomyces cerevisiae
-
Urban, J., A. Soulard, A. Huber, S. Lippman, D. Mukhopadhyay et al., 2007 Sch9 is a major target of TORC1 in Saccharomyces cerevisiae. Mol. Cell 26: 663-674.
-
(2007)
Mol. Cell
, vol.26
, pp. 663-674
-
-
Urban, J.1
Soulard, A.2
Huber, A.3
Lippman, S.4
Mukhopadhyay, D.5
-
69
-
-
32044465506
-
TOR signaling in growth and metabolism
-
Wullschleger, S., R. Loewith, and M. N. Hall, 2006 TOR signaling in growth and metabolism. Cell 124: 471-484.
-
(2006)
Cell
, vol.124
, pp. 471-484
-
-
Wullschleger, S.1
Loewith, R.2
Hall, M.N.3
-
70
-
-
33747626107
-
Rapamycin activates Tap42-associated phosphatases by abrogating their association with Tor complex 1
-
Yan, G., X. Shen, and Y. Jiang, 2006 Rapamycin activates Tap42-associated phosphatases by abrogating their association with Tor complex 1. EMBO J. 25: 3546-3555.
-
(2006)
EMBO J
, vol.25
, pp. 3546-3555
-
-
Yan, G.1
Shen, X.2
Jiang, Y.3
-
71
-
-
84862776556
-
The TOR complex 1 is a direct target of Rho1 GTPase
-
Yan, G., Y. Lai, and Y. Jiang, 2012 The TOR complex 1 is a direct target of Rho1 GTPase. Mol. Cell 45: 743-753.
-
(2012)
Mol. Cell
, vol.45
, pp. 743-753
-
-
Yan, G.1
Lai, Y.2
Jiang, Y.3
-
72
-
-
67650237693
-
Tap42-associated protein phosphatase type 2A negatively regulates induction of autophagy
-
Yorimitsu, T., C. He, K. Wang, and D. J. Klionsky, 2009 Tap42-associated protein phosphatase type 2A negatively regulates induction of autophagy. Autophagy 5: 616-624.
-
(2009)
Autophagy
, vol.5
, pp. 616-624
-
-
Yorimitsu, T.1
He, C.2
Wang, K.3
Klionsky, D.J.4
-
73
-
-
60749127330
-
Glucose regulates transcription in yeast through a network of signaling pathways
-
Zaman, S., S. I. Lippman, L. Schneper, N. Slonim, and J. R. Broach, 2009 Glucose regulates transcription in yeast through a network of signaling pathways. Mol. Syst. Biol. 5: 245.
-
(2009)
Mol. Syst. Biol
, vol.5
, pp. 245
-
-
Zaman, S.1
Lippman, S.I.2
Schneper, L.3
Slonim, N.4
Broach, J.R.5
-
74
-
-
80855128291
-
Mapping the interaction of Snf1 with TORC1 in Saccharomyces cerevisiae
-
Zhang, J., S. Vaga, P. Chumnanpuen, R. Kumar, G. N. Vemuri et al., 2011 Mapping the interaction of Snf1 with TORC1 in Saccharomyces cerevisiae. Mol. Syst. Biol. 7: 545.
-
(2011)
Mol. Syst. Biol
, vol.7
, pp. 545
-
-
Zhang, J.1
Vaga, S.2
Chumnanpuen, P.3
Kumar, R.4
Vemuri, G.N.5
-
75
-
-
0029071264
-
TOR kinase domains are required for two distinct functions, only one of which is inhibited by rapamycin
-
Zheng, X. F., D. Florentino, J. Chen, G. R. Crabtree, and S. L. Schreiber, 1995 TOR kinase domains are required for two distinct functions, only one of which is inhibited by rapamycin. Cell 82: 121-130.
-
(1995)
Cell
, vol.82
, pp. 121-130
-
-
Zheng, X.F.1
Florentino, D.2
Chen, J.3
Crabtree, G.R.4
Schreiber, S.L.5
-
76
-
-
78650510609
-
Mtor: From growth signal integration to cancer, diabetes and ageing
-
Zoncu, R., A. Efeyan, and D. M. Sabatini, 2011 Mtor: from growth signal integration to cancer, diabetes and ageing. Nat. Rev. Mol. Cell Biol. 12: 21-35.
-
(2011)
Nat. Rev. Mol. Cell Biol
, vol.12
, pp. 21-35
-
-
Zoncu, R.1
Efeyan, A.2
Sabatini, D.M.3
-
77
-
-
13744258110
-
Tor and cyclic AMP-protein kinase A: Two parallel pathways regulating expression of genes required for cell growth. Eukaryot
-
Zurita-Martinez, S. A., and M. E. Cardenas, 2005 Tor and cyclic AMP-protein kinase A: two parallel pathways regulating expression of genes required for cell growth. Eukaryot. Cell 4: 63-71.
-
(2005)
Cell
, vol.4
, pp. 63-71
-
-
Zurita-Martinez, S.A.1
Cardenas, M.E.2
|