메뉴 건너뛰기
Eukaryotic Cell
Volumn 13, Issue 8, 2014, Pages 990-1000
Heterochromatin controls γH2A localization in Neurospora crassa
Author keywords

[No Author keywords available]
Indexed keywords

NEUROSPORA CRASSA;
EID: 84907451775     PISSN: 15359778     EISSN: None     Source Type: Journal    
DOI: 10.1128/EC.00117-14     Document Type: Article
Times cited : (21)
References (89)
  • 1
    • 33845755946 scopus 로고    scopus 로고
    • Heterochromatin revisited
    • Grewal SI, Jia S. 2007. Heterochromatin revisited. Nat. Rev. Genet. 8:35-46. http://dx.doi.org/10.1038/nrg2008.
    • (2007) Nat. Rev. Genet. , vol.8 , pp. 35-46
    • Grewal, S.I.1    Jia, S.2
  • 2
    • 77958109197 scopus 로고    scopus 로고
    • Mechanisms of trinucleotide repeat instability during human development
    • McMurray CT. 2010. Mechanisms of trinucleotide repeat instability during human development. Nat. Rev. Genet. 11:786-799. http://dx.doi.org /10.1038/nrg2828.
    • (2010) Nat. Rev. Genet. , vol.11 , pp. 786-799
    • McMurray, C.T.1
  • 3
    • 77649144557 scopus 로고    scopus 로고
    • Repeat instability as the basis for human diseases and as a potential target for therapy
    • Lopez Castel A, Cleary JD, Pearson CE. 2010. Repeat instability as the basis for human diseases and as a potential target for therapy. Nat. Rev. Mol. Cell Biol. 11:165-170. http://dx.doi.org/10.1038/nrm2854.
    • (2010) Nat. Rev. Mol. Cell Biol. , vol.11 , pp. 165-170
    • Lopez Castel, A.1    Cleary, J.D.2    Pearson, C.E.3
  • 4
    • 44349186294 scopus 로고    scopus 로고
    • Epigenetic regulation of heterochromatic DNA stability
    • Peng J, Karpen G. 2008. Epigenetic regulation of heterochromatic DNA stability. Curr. Opin. Genet. Dev. 18:204-211. http://dx.doi.org/10.1016 /j.gde.2008.01.021.
    • (2008) Curr. Opin. Genet. Dev. , vol.18 , pp. 204-211
    • Peng, J.1    Karpen, G.2
  • 5
    • 33947432388 scopus 로고    scopus 로고
    • Replication fork stalling at natural impediments
    • Mirkin EV, Mirkin SM. 2007. Replication fork stalling at natural impediments. Microbiol. Mol. Biol. Rev. 71:13-35. http://dx.doi.org/10.1128 /MMBR.00030-06.
    • (2007) Microbiol. Mol. Biol. Rev. , vol.71 , pp. 13-35
    • Mirkin, E.V.1    Mirkin, S.M.2
  • 6
    • 33744807443 scopus 로고    scopus 로고
    • DNA structures, repeat expansions and human hereditary disorders
    • Mirkin SM. 2006. DNA structures, repeat expansions and human hereditary disorders. Curr. Opin. Struct. Biol. 16:351-358. http://dx.doi.org/10. 1016/j.sbi.2006.05.004.
    • (2006) Curr. Opin. Struct. Biol. , vol.16 , pp. 351-358
    • Mirkin, S.M.1
  • 7
    • 79958748581 scopus 로고    scopus 로고
    • Chromosomes and cancer cells
    • Thompson SL, Compton DA. 2011. Chromosomes and cancer cells. Chromosome Res. 19:433-444. http://dx.doi.org/10.1007/s10577-010 -9179-y.
    • (2011) Chromosome Res. , vol.19 , pp. 433-444
    • Thompson, S.L.1    Compton, D.A.2
  • 8
    • 77956539396 scopus 로고    scopus 로고
    • DNA instability at chromosomal fragile sites in cancer
    • Dillon LW, Burrow AA, Wang YH. 2010. DNA instability at chromosomal fragile sites in cancer. Curr. Genomics 11:326-337. http://dx.doi. org/10.2174/138920210791616699.
    • (2010) Curr. Genomics , vol.11 , pp. 326-337
    • Dillon, L.W.1    Burrow, A.A.2    Wang, Y.H.3
  • 10
    • 33344475536 scopus 로고    scopus 로고
    • The maize genome as a model for efficient sequence analysis of large plant genomes
    • Rabinowicz PD, Bennetzen JL. 2006. The maize genome as a model for efficient sequence analysis of large plant genomes. Curr. Opin. Plant Biol. 9:149-156. http://dx.doi.org/10.1016/j.pbi.2006.01.015.
    • (2006) Curr. Opin. Plant Biol. , vol.9 , pp. 149-156
    • Rabinowicz, P.D.1    Bennetzen, J.L.2
  • 11
    • 0037464589 scopus 로고    scopus 로고
    • The genome sequence of the filamentous fungus Neurospora crassa
    • Galagan JE, et al. 2003. The genome sequence of the filamentous fungus Neurospora crassa. Nature 422:859-868. http://dx.doi.org/10.1038 /nature01554.
    • (2003) Nature , vol.422 , pp. 859-868
    • Galagan, J.E.1
  • 12
    • 2042437650 scopus 로고    scopus 로고
    • Initial sequencing and analysis of the human genome
    • Lander ES, et al. 2001. Initial sequencing and analysis of the human genome. Nature 409:860-921. http://dx.doi.org/10.1038/35057062.
    • (2001) Nature , vol.409 , pp. 860-921
    • Lander, E.S.1
  • 13
    • 0037459109 scopus 로고    scopus 로고
    • Centromeres and kinetochores: From epigenetics to mitotic checkpoint signaling
    • Cleveland DW, Mao Y, Sullivan KF. 2003. Centromeres and kinetochores: from epigenetics to mitotic checkpoint signaling. Cell 112:407- 421. http://dx.doi.org/10.1016/S0092-8674(03)00115-6.
    • (2003) Cell , vol.112 , pp. 407-421
    • Cleveland, D.W.1    Mao, Y.2    Sullivan, K.F.3
  • 14
    • 79958032907 scopus 로고    scopus 로고
    • Heterochromatin is required for normal distribution of Neurospora crassa CenH3
    • Smith KM, Phatale PA, Sullivan CM, Pomraning KR, Freitag M. 2011. Heterochromatin is required for normal distribution of Neurospora crassa CenH3. Mol. Cell. Biol. 31:2528-2542. http://dx.doi.org/10.1128/MCB. 01285-10.
    • (2011) Mol. Cell. Biol. , vol.31 , pp. 2528-2542
    • Smith, K.M.1    Phatale, P.A.2    Sullivan, C.M.3    Pomraning, K.R.4    Freitag, M.5
  • 16
    • 78649694079 scopus 로고    scopus 로고
    • DNA methylation and normal chromosome behavior in Neurospora depend on five components of a histone methyltransferase complex, DCDC
    • Lewis ZA, Adhvaryu KK, Honda S, Shiver AL, Knip M, Sack R, Selker EU. 2010. DNA methylation and normal chromosome behavior in Neurospora depend on five components of a histone methyltransferase complex, DCDC. PLoS Genet. 6:e1001196. http://dx.doi.org/10.1371/journal. pgen.1001196.
    • (2010) PLoS Genet. , vol.6
    • Lewis, Z.A.1    Adhvaryu, K.K.2    Honda, S.3    Shiver, A.L.4    Knip, M.5    Sack, R.6    Selker, E.U.7
  • 17
    • 77952327803 scopus 로고    scopus 로고
    • Identification of DIM-7, a protein required to target the DIM-5 H3 methyltransferase to chromatin
    • Lewis ZA, Adhvaryu KK, Honda S, Shiver AL, Selker EU. 2010. Identification of DIM-7, a protein required to target the DIM-5 H3 methyltransferase to chromatin. Proc. Natl. Acad. Sci. U. S. A. 107:8310-8315. http://dx.doi.org/10.1073/pnas.1000328107.
    • (2010) Proc. Natl. Acad. Sci. U. S. A. , vol.107 , pp. 8310-8315
    • Lewis, Z.A.1    Adhvaryu, K.K.2    Honda, S.3    Shiver, A.L.4    Selker, E.U.5
  • 18
    • 78049432270 scopus 로고    scopus 로고
    • DCAF26, an adaptor protein of Cul4-based E3, is essential for DNA methylation in Neurospora crassa
    • Xu H, Wang J, Hu Q, Quan Y, Chen H, Cao Y, Li C, Wang Y, He Q. 2010. DCAF26, an adaptor protein of Cul4-based E3, is essential for DNA methylation in Neurospora crassa. PLoS Genet. 6:e1001132. http://dx.doi. org/10.1371/journal.pgen.1001132.
    • (2010) PLoS Genet. , vol.6
    • Xu, H.1    Wang, J.2    Hu, Q.3    Quan, Y.4    Chen, H.5    Cao, Y.6    Li, C.7    Wang, Y.8    He, Q.9
  • 19
    • 77951164496 scopus 로고    scopus 로고
    • Ubiquitin ligase components Cullin4 and DDB1 are essential for DNA methylation in Neurospora crassa
    • Zhao Y, Shen Y, Yang S, Wang J, Hu Q, Wang Y, He Q. 2010. Ubiquitin ligase components Cullin4 and DDB1 are essential for DNA methylation in Neurospora crassa. J. Biol. Chem. 285:4355-4365. http://dx.doi.org/10. 1074/jbc.M109.034710.
    • (2010) J. Biol. Chem. , vol.285 , pp. 4355-4365
    • Zhao, Y.1    Shen, Y.2    Yang, S.3    Wang, J.4    Hu, Q.5    Wang, Y.6    He, Q.7
  • 21
    • 1242271994 scopus 로고    scopus 로고
    • HP1 is essential for DNA methylation in Neurospora
    • Freitag M, Hickey PC, Khlafallah TK, Read ND, Selker EU. 2004. HP1 is essential for DNA methylation in Neurospora. Mol. Cell 13:427-434. http://dx.doi.org/10.1016/S1097-2765(04)00024-3.
    • (2004) Mol. Cell , vol.13 , pp. 427-434
    • Freitag, M.1    Hickey, P.C.2    Khlafallah, T.K.3    Read, N.D.4    Selker, E.U.5
  • 22
    • 84860757181 scopus 로고    scopus 로고
    • Heterochromatin protein 1 forms distinct complexes to direct histone deacetylation and DNA methylation
    • Honda S, Lewis ZA, Shimada K, Fischle W, Sack R, Selker EU. 2012. Heterochromatin protein 1 forms distinct complexes to direct histone deacetylation and DNA methylation. Nat. Struct. Mol. Biol. 19:471-477. http://dx.doi.org/10.1038/nsmb.2274.
    • (2012) Nat. Struct. Mol. Biol. , vol.19 , pp. 471-477
    • Honda, S.1    Lewis, Z.A.2    Shimada, K.3    Fischle, W.4    Sack, R.5    Selker, E.U.6
  • 23
    • 77649083650 scopus 로고    scopus 로고
    • The DMM complex prevents spreading of DNA methylation from transposons to nearby genes in Neurospora crassa
    • Honda S, Lewis ZA, Huarte M, Cho LY, David LL, Shi Y, Selker EU. 2010. The DMM complex prevents spreading of DNA methylation from transposons to nearby genes in Neurospora crassa. Genes Dev. 24:443- 454. http://dx.doi.org/10.1101/gad.1893210.
    • (2010) Genes Dev. , vol.24 , pp. 443-454
    • Honda, S.1    Lewis, Z.A.2    Huarte, M.3    Cho, L.Y.4    David, L.L.5    Shi, Y.6    Selker, E.U.7
  • 25
    • 23044498502 scopus 로고    scopus 로고
    • Comprehensive analysis of heterochromatin- and RNAi-mediated epigenetic control of the fission yeast genome
    • Cam HP, Sugiyama T, Chen ES, Chen X, FitzGerald PC, Grewal SI. 2005. Comprehensive analysis of heterochromatin- and RNAi-mediated epigenetic control of the fission yeast genome. Nat. Genet. 37:809-819. http://dx.doi.org/10.1038/ng1602.
    • (2005) Nat. Genet. , vol.37 , pp. 809-819
    • Cam, H.P.1    Sugiyama, T.2    Chen, E.S.3    Chen, X.4    FitzGerald, P.C.5    Grewal, S.I.6
  • 26
    • 63449109369 scopus 로고    scopus 로고
    • Heterochromatic genome stability requires regulators of histone H3 K9 methylation
    • Peng JC, Karpen GH. 2009. Heterochromatic genome stability requires regulators of histone H3 K9 methylation. PLoS Genet. 5:e1000435. http: //dx.doi.org/10.1371/journal.pgen.1000435.
    • (2009) PLoS Genet. , vol.5
    • Peng, J.C.1    Karpen, G.H.2
  • 27
    • 33845866637 scopus 로고    scopus 로고
    • H3K9 methylation and RNA interference regulate nucleolar organization and repeatedDNAstability
    • Peng JC, Karpen GH. 2007. H3K9 methylation and RNA interference regulate nucleolar organization and repeatedDNAstability. Nat. Cell Biol. 9:25-35. http://dx.doi.org/10.1038/ncb1514.
    • (2007) Nat. Cell Biol. , vol.9 , pp. 25-35
    • Peng, J.C.1    Karpen, G.H.2
  • 28
    • 70449555139 scopus 로고    scopus 로고
    • Ribosomal DNA contributes to global chromatin regulation
    • Paredes S, Maggert KA. 2009. Ribosomal DNA contributes to global chromatin regulation. Proc. Natl. Acad. Sci. U. S. A. 106:17829-17834. http://dx.doi.org/10.1073/pnas.0906811106.
    • (2009) Proc. Natl. Acad. Sci. U. S. A. , vol.106 , pp. 17829-17834
    • Paredes, S.1    Maggert, K.A.2
  • 29
    • 84875517379 scopus 로고    scopus 로고
    • Differential contribution of HP1 proteins to DNAend resection and homology-directed repair
    • Soria G, Almouzni G. 2013. Differential contribution of HP1 proteins to DNAend resection and homology-directed repair. Cell Cycle 12:422-429. http://dx.doi.org/10.4161/cc.23215.
    • (2013) Cell Cycle , vol.12 , pp. 422-429
    • Soria, G.1    Almouzni, G.2
  • 30
    • 84878831995 scopus 로고    scopus 로고
    • HP1 promotes tumor suppressor BRCA1 functions during the DNA damage response
    • Lee YH, Kuo CY, Stark JM, Shih HM, Ann DK. 2013. HP1 promotes tumor suppressor BRCA1 functions during the DNA damage response. Nucleic Acids Res. 41:5784-5798. http://dx.doi.org/10.1093/nar/gkt231.
    • (2013) Nucleic Acids Res. , vol.41 , pp. 5784-5798
    • Lee, Y.H.1    Kuo, C.Y.2    Stark, J.M.3    Shih, H.M.4    Ann, D.K.5
  • 31
    • 84864983275 scopus 로고    scopus 로고
    • Kruppel-associated box (KRAB)-associated co-repressor (KAP-1) Ser-473 phosphorylation regulates heterochromatin protein 1beta (HP1-beta) mobilization and DNA repair in heterochromatin
    • Bolderson E, Savage KI, Mahen R, Pisupati V, Graham ME, Richard DJ, Robinson PJ, Venkitaraman AR, Khanna KK. 2012. Kruppel-associated box (KRAB)-associated co-repressor (KAP-1) Ser-473 phosphorylation regulates heterochromatin protein 1beta (HP1-beta) mobilization and DNA repair in heterochromatin. J. Biol. Chem. 287:28122-28131. http: //dx.doi.org/10.1074/jbc.M112.368381.
    • (2012) J. Biol. Chem. , vol.287 , pp. 28122-28131
    • Bolderson, E.1    Savage, K.I.2    Mahen, R.3    Pisupati, V.4    Graham, M.E.5    Richard, D.J.6    Robinson, P.J.7    Venkitaraman, A.R.8    Khanna, K.K.9
  • 32
    • 79952314830 scopus 로고    scopus 로고
    • Double-strand breaks in heterochromatin move outside of a dynamic HP1a domain to complete recombinational repair
    • Chiolo I, Minoda A, Colmenares SU, Polyzos A, Costes SV, Karpen GH. 2011. Double-strand breaks in heterochromatin move outside of a dynamic HP1a domain to complete recombinational repair. Cell 144:732- 744. http://dx.doi.org/10.1016/j.cell.2011.02.012.
    • (2011) Cell , vol.144 , pp. 732-744
    • Chiolo, I.1    Minoda, A.2    Colmenares, S.U.3    Polyzos, A.4    Costes, S.V.5    Karpen, G.H.6
  • 33
    • 79955507697 scopus 로고    scopus 로고
    • HP1alpha recruitment to DNA damage by p150CAF-1 promotes homologous recombination repair
    • Baldeyron C, Soria G, Roche D, Cook AJ, Almouzni G. 2011. HP1alpha recruitment to DNA damage by p150CAF-1 promotes homologous recombination repair. J. Cell Biol. 193:81-95. http://dx.doi.org/10.1083/jcb. 201101030.
    • (2011) J. Cell Biol. , vol.193 , pp. 81-95
    • Baldeyron, C.1    Soria, G.2    Roche, D.3    Cook, A.J.4    Almouzni, G.5
  • 35
    • 71949105212 scopus 로고    scopus 로고
    • The emerging role of HP1 in the DNA damage response
    • Dinant C, Luijsterburg MS. 2009. The emerging role of HP1 in the DNA damage response. Mol. Cell. Biol. 29:6335-6340. http://dx.doi.org/10. 1128/MCB.01048-09.
    • (2009) Mol. Cell. Biol. , vol.29 , pp. 6335-6340
    • Dinant, C.1    Luijsterburg, M.S.2
  • 36
    • 51349099238 scopus 로고    scopus 로고
    • The HP1-p150/CAF-1 interaction is required for pericentric heterochromatin replication and S-phase progression in mouse cells
    • Quivy JP, Gerard A, Cook AJ, Roche D, Almouzni G. 2008. The HP1-p150/CAF-1 interaction is required for pericentric heterochromatin replication and S-phase progression in mouse cells. Nat. Struct. Mol. Biol. 15:972-979. http://dx.doi.org/10.1038/nsmb.1470.
    • (2008) Nat. Struct. Mol. Biol. , vol.15 , pp. 972-979
    • Quivy, J.P.1    Gerard, A.2    Cook, A.J.3    Roche, D.4    Almouzni, G.5
  • 37
    • 44449136965 scopus 로고    scopus 로고
    • HP1-beta mobilization promotes chromatin changes that initiate the DNA damage response
    • Ayoub N, Jeyasekharan AD, Bernal JA, Venkitaraman AR. 2008. HP1-beta mobilization promotes chromatin changes that initiate the DNA damage response. Nature 453:682- 686. http://dx.doi.org/10. 1038/nature06875.
    • (2008) Nature , vol.453 , pp. 682-686
    • Ayoub, N.1    Jeyasekharan, A.D.2    Bernal, J.A.3    Venkitaraman, A.R.4
  • 40
    • 0034700511 scopus 로고    scopus 로고
    • A role for Saccharomyces cerevisiae histone H2A in DNA repair
    • Downs JA, Lowndes NF, Jackson SP. 2000. A role for Saccharomyces cerevisiae histone H2A in DNA repair. Nature 408:1001-1004. http://dx. doi.org/10.1038/35050000.
    • (2000) Nature , vol.408 , pp. 1001-1004
    • Downs, J.A.1    Lowndes, N.F.2    Jackson, S.P.3
  • 41
    • 0343280013 scopus 로고    scopus 로고
    • A critical role for histone H2AX in recruitment of repair factors to nuclear foci after DNA damage
    • Paull TT, Rogakou EP, Yamazaki V, Kirchgessner CU, Gellert M, Bonner WM. 2000. A critical role for histone H2AX in recruitment of repair factors to nuclear foci after DNA damage. Curr. Biol. 10:886-895. http://dx.doi.org/10.1016/S0960-9822(00)00610-2.
    • (2000) Curr. Biol. , vol.10 , pp. 886-895
    • Paull, T.T.1    Rogakou, E.P.2    Yamazaki, V.3    Kirchgessner, C.U.4    Gellert, M.5    Bonner, W.M.6
  • 42
    • 77951498531 scopus 로고    scopus 로고
    • High-resolution profiling of gammaH2AX around DNA double strand breaks in the mammalian genome
    • Iacovoni JS, Caron P, Lassadi I, Nicolas E, Massip L, Trouche D, Legube G. 2010. High-resolution profiling of gammaH2AX around DNA double strand breaks in the mammalian genome.EMBOJ. 29:1446-1457. http://dx.doi.org/10.1038/emboj.2010.38.
    • (2010) EMBOJ. , vol.29 , pp. 1446-1457
    • Iacovoni, J.S.1    Caron, P.2    Lassadi, I.3    Nicolas, E.4    Massip, L.5    Trouche, D.6    Legube, G.7
  • 44
    • 0032489520 scopus 로고    scopus 로고
    • DNA double-stranded breaks induce histone H2AX phosphorylation on serine 139
    • Rogakou EP, Pilch DR, Orr AH, Ivanova VS, Bonner WM. 1998. DNA double-stranded breaks induce histone H2AX phosphorylation on serine 139. J. Biol. Chem. 273:5858-5868. http://dx.doi.org/10.1074/jbc.273.10. 5858.
    • (1998) J. Biol. Chem , vol.273 , pp. 5858-5868
    • Rogakou, E.P.1    Pilch, D.R.2    Orr, A.H.3    Ivanova, V.S.4    Bonner, W.M.5
  • 45
    • 77957344278 scopus 로고    scopus 로고
    • Rad3 decorates critical chromosomal domains with gammaH2A to protect genome integrity during S-phase in fission yeast
    • Rozenzhak S, Mejia-Ramirez E, Williams JS, Schaffer L, Hammond JA, Head SR, Russell P. 2010. Rad3 decorates critical chromosomal domains with gammaH2A to protect genome integrity during S-phase in fission yeast. PLoS Genet. 6:e1001032. http://dx.doi.org/10.1371/journal.pgen. 1001032.
    • (2010) PLoS Genet. , vol.6
    • Rozenzhak, S.1    Mejia-Ramirez, E.2    Williams, J.S.3    Schaffer, L.4    Hammond, J.A.5    Head, S.R.6    Russell, P.7
  • 47
    • 0002705742 scopus 로고
    • The use of Ignite (Basta; glufosinate; phosphinothricin) to select transformants of bar-containing plasmids in Neurospora crassa
    • Pall ML. 1993. The use of Ignite (Basta; glufosinate; phosphinothricin) to select transformants of bar-containing plasmids in Neurospora crassa. Fungal Genet. Newsl. 40:58.
    • (1993) Fungal Genet. Newsl. , vol.40 , pp. 58
    • Pall, M.L.1
  • 49
    • 58949085244 scopus 로고    scopus 로고
    • An efficient one-step site-directed deletion, insertion, single and multiple-site plasmid mutagenesis protocol
    • Liu H, Naismith JH. 2008. An efficient one-step site-directed deletion, insertion, single and multiple-site plasmid mutagenesis protocol. BMC Biotechnol. 8:91. http://dx.doi.org/10.1186/1472-6750-8-91.
    • (2008) BMC Biotechnol. , vol.8 , pp. 91
    • Liu, H.1    Naismith, J.H.2
  • 50
    • 0035891265 scopus 로고    scopus 로고
    • A histone H3 methyltransferase controls DNA methylation in Neurospora crassa
    • Tamaru H, Selker EU. 2001. A histone H3 methyltransferase controls DNA methylation in Neurospora crassa. Nature 414:277-283. http://dx. doi.org/10.1038/35104508.
    • (2001) Nature , vol.414 , pp. 277-283
    • Tamaru, H.1    Selker, E.U.2
  • 51
    • 84855272671 scopus 로고    scopus 로고
    • Substitutions in the amino-terminal tail of Neurospora histone H3 have varied effects on DNA methylation
    • Adhvaryu KK, Berge E, Tamaru H, Freitag M, Selker EU. 2011. Substitutions in the amino-terminal tail of Neurospora histone H3 have varied effects on DNA methylation. PLoS Genet. 7:e1002423. http://dx.doi. org/10.1371/journal.pgen.1002423.
    • (2011) PLoS Genet. , vol.7
    • Adhvaryu, K.K.1    Berge, E.2    Tamaru, H.3    Freitag, M.4    Selker, E.U.5
  • 52
    • 0002934149 scopus 로고    scopus 로고
    • Improved plasmids for gene targeting at the his-3 locus of Neurospora crassa by electroporation
    • Margolin BS, Freitag M, Selker EU. 1997. Improved plasmids for gene targeting at the his-3 locus of Neurospora crassa by electroporation. Fungal Genet. Newsl. 44:34-36.
    • (1997) Fungal Genet. Newsl. , vol.44 , pp. 34-36
    • Margolin, B.S.1    Freitag, M.2    Selker, E.U.3
  • 53
    • 59749105927 scopus 로고    scopus 로고
    • Genome-wide high throughput analysis of DNA methylation in eukaryotes
    • Pomraning KR, Smith KM, Freitag M. 2009. Genome-wide high throughput analysis of DNA methylation in eukaryotes. Methods 47:142- 150. http://dx.doi.org/10.1016/j.ymeth.2008.09.022.
    • (2009) Methods , vol.47 , pp. 142-150
    • Pomraning, K.R.1    Smith, K.M.2    Freitag, M.3
  • 54
    • 52649083766 scopus 로고    scopus 로고
    • Direct interaction between DNA methyltransferase DIM-2 and HP1 is required for DNA methylation in Neurospora crassa
    • Honda S, Selker EU. 2008. Direct interaction between DNA methyltransferase DIM-2 and HP1 is required for DNA methylation in Neurospora crassa. Mol. Cell. Biol. 28:6044-6055. http://dx.doi.org/10.1128/MCB. 00823-08.
    • (2008) Mol. Cell. Biol. , vol.28 , pp. 6044-6055
    • Honda, S.1    Selker, E.U.2
  • 55
    • 0034616952 scopus 로고    scopus 로고
    • Short TpA-rich segments of the zeta-eta region induce DNA methylation in Neurospora crassa
    • Miao VP, Freitag M, Selker EU. 2000. Short TpA-rich segments of the zeta-eta region induce DNA methylation in Neurospora crassa. J. Mol. Biol. 300:249-273. http://dx.doi.org/10.1006/jmbi.2000.3864.
    • (2000) J. Mol. Biol. , vol.300 , pp. 249-273
    • Miao, V.P.1    Freitag, M.2    Selker, E.U.3
  • 56
    • 84859210032 scopus 로고    scopus 로고
    • Fast gapped-read alignment with Bowtie 2
    • Langmead B, Salzberg SL. 2012. Fast gapped-read alignment with Bowtie 2. Nat. Methods 9:357-359. http://dx.doi.org/10.1038/nmeth.1923.
    • (2012) Nat. Methods , vol.9 , pp. 357-359
    • Langmead, B.1    Salzberg, S.L.2
  • 57
    • 84875634162 scopus 로고    scopus 로고
    • Integrative Genomics Viewer (IGV): High-performance genomics data visualization and exploration
    • Thorvaldsdottir H, Robinson JT, Mesirov JP. 2013. Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration. Brief. Bioinform. 14:178-192. http://dx.doi.org/10.1093/bib /bbs017.
    • (2013) Brief. Bioinform. , vol.14 , pp. 178-192
    • Thorvaldsdottir, H.1    Robinson, J.T.2    Mesirov, J.P.3
  • 59
    • 29144455282 scopus 로고    scopus 로고
    • De novo identification of repeat families in large genomes
    • Price AL, Jones NC, Pevzner PA. 2005. De novo identification of repeat families in large genomes. Bioinformatics 21(Suppl 1):i351-i358. http: //dx.doi.org/10.1093/bioinformatics/bti1018.
    • (2005) Bioinformatics , vol.21 , pp. i351-i358
    • Price, A.L.1    Jones, N.C.2    Pevzner, P.A.3
  • 60
    • 0036226603 scopus 로고    scopus 로고
    • BLAT-the BLAST-like alignment tool
    • Kent WJ. 2002. BLAT-the BLAST-like alignment tool. Genome Res. 12:656-664. http://dx.doi.org/10.1101/gr.229202.
    • (2002) Genome Res. , vol.12 , pp. 656-664
    • Kent, W.J.1
  • 62
    • 77951770756 scopus 로고    scopus 로고
    • BEDTools: A flexible suite of utilities for comparing genomic features
    • Quinlan AR, Hall IM. 2010. BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics 26:841-842. http://dx.doi. org/10.1093/bioinformatics/btq033.
    • (2010) Bioinformatics , vol.26 , pp. 841-842
    • Quinlan, A.R.1    Hall, I.M.2
  • 63
    • 20444463839 scopus 로고    scopus 로고
    • Using microscopy to explore the duplication cycle
    • Talbot N (ed), Oxford University Press, Oxford, United Kingdom
    • Momany M. 2001. Using microscopy to explore the duplication cycle, p 119-125. In Talbot N (ed), Molecular and cell biology of filamentous fungi: a practical approach. Oxford University Press, Oxford, United Kingdom.
    • (2001) Molecular and Cell Biology of Filamentous Fungi: A Practical Approach , pp. 119-125
    • Momany, M.1
  • 64
    • 0018972818 scopus 로고
    • Lyticase: Endoglucanase and protease activities that act together in yeast cell lysis
    • Scott JH, Schekman R. 1980. Lyticase: endoglucanase and protease activities that act together in yeast cell lysis. J. Bacteriol. 142:414-423.
    • (1980) J. Bacteriol. , vol.142 , pp. 414-423
    • Scott, J.H.1    Schekman, R.2
  • 65
    • 0035930537 scopus 로고    scopus 로고
    • Histone H2AX is phosphorylated in an ATRdependent manner in response to replicational stress
    • Ward IM, Chen J. 2001. Histone H2AX is phosphorylated in an ATRdependent manner in response to replicational stress. J. Biol. Chem. 276: 47759-47762. http://dx.doi.org/10.1074/jbc.C100569200.
    • (2001) J. Biol. Chem. , vol.276 , pp. 47759-47762
    • Ward, I.M.1    Chen, J.2
  • 66
    • 84859003982 scopus 로고    scopus 로고
    • Neurospora mrc1 homologue is involved in replication stability and is required for normal cell growth and chromosome integrity in mus-9 and mus-21 mutants
    • Wakabayashi M, Saijyou N, Hatakeyama S, Inoue H, Tanaka S. 2012. Neurospora mrc1 homologue is involved in replication stability and is required for normal cell growth and chromosome integrity in mus-9 and mus-21 mutants. Fungal Genet. Biol. 49:263-270. http://dx.doi.org/10. 1016/j.fgb.2012.02.007.
    • (2012) Fungal Genet. Biol. , vol.49 , pp. 263-270
    • Wakabayashi, M.1    Saijyou, N.2    Hatakeyama, S.3    Inoue, H.4    Tanaka, S.5
  • 67
    • 77956342893 scopus 로고    scopus 로고
    • ATM and ATR homologues of Neurospora crassa are essential for normal cell growth and maintenance of chromosome integrity
    • Wakabayashi M, Ishii C, Hatakeyama S, Inoue H, Tanaka S. 2010. ATM and ATR homologues of Neurospora crassa are essential for normal cell growth and maintenance of chromosome integrity. Fungal Genet. Biol. 47:809-817. http://dx.doi.org/10.1016/j.fgb.2010.05.010.
    • (2010) Fungal Genet. Biol. , vol.47 , pp. 809-817
    • Wakabayashi, M.1    Ishii, C.2    Hatakeyama, S.3    Inoue, H.4    Tanaka, S.5
  • 72
    • 79551537570 scopus 로고    scopus 로고
    • gammaH2A is a component of yeast heterochromatin required for telomere elongation
    • Kitada T, Schleker T, Sperling AS, Xie W, Gasser SM, Grunstein M. 2011. gammaH2A is a component of yeast heterochromatin required for telomere elongation. Cell Cycle 10:293-300. http://dx.doi.org/10.4161/cc. 10.2.14536.
    • (2011) Cell Cycle , vol.10 , pp. 293-300
    • Kitada, T.1    Schleker, T.2    Sperling, A.S.3    Xie, W.4    Gasser, S.M.5    Grunstein, M.6
  • 73
    • 17644409069 scopus 로고    scopus 로고
    • ATM activation by DNA double-strand breaks through the Mre11-Rad50-Nbs1 complex
    • Lee JH, Paull TT. 2005. ATM activation by DNA double-strand breaks through the Mre11-Rad50-Nbs1 complex. Science 308:551-554. http://dx. doi.org/10.1126/science.1108297.
    • (2005) Science , vol.308 , pp. 551-554
    • Lee, J.H.1    Paull, T.T.2
  • 74
    • 1842431822 scopus 로고    scopus 로고
    • Direct activation of the ATM protein kinase by the Mre11/Rad50/Nbs1 complex
    • Lee JH, Paull TT. 2004. Direct activation of the ATM protein kinase by the Mre11/Rad50/Nbs1 complex. Science 304:93-96. http://dx.doi.org/10. 1126/science.1091496.
    • (2004) Science , vol.304 , pp. 93-96
    • Lee, J.H.1    Paull, T.T.2
  • 75
    • 18244371925 scopus 로고    scopus 로고
    • Functional uncoupling ofMCMhelicase and DNA polymerase activities activates the ATR-dependent checkpoint
    • Byun TS, Pacek M, Yee MC, Walter JC, Cimprich KA. 2005. Functional uncoupling ofMCMhelicase and DNA polymerase activities activates the ATR-dependent checkpoint. Genes Dev. 19:1040-1052. http://dx.doi.org /10.1101/gad.1301205.
    • (2005) Genes Dev. , vol.19 , pp. 1040-1052
    • Byun, T.S.1    Pacek, M.2    Yee, M.C.3    Walter, J.C.4    Cimprich, K.A.5
  • 76
    • 84891301320 scopus 로고    scopus 로고
    • Causes and consequences of replication stress
    • Zeman MK, Cimprich KA. 2014. Causes and consequences of replication stress. Nat. Cell Biol. 16:2-9. http://dx.doi.org/10.1038/ncb2897.
    • (2014) Nat. Cell Biol. , vol.16 , pp. 2-9
    • Zeman, M.K.1    Cimprich, K.A.2
  • 77
    • 84880015137 scopus 로고    scopus 로고
    • Long-range heterochromatin association is mediated by silencing and double-strand DNA break repair proteins
    • Kirkland JG, Kamakaka RT. 2013. Long-range heterochromatin association is mediated by silencing and double-strand DNA break repair proteins. J. Cell Biol. 201:809-826. http://dx.doi.org/10.1083/jcb.201211105.
    • (2013) J. Cell Biol. , vol.201 , pp. 809-826
    • Kirkland, J.G.1    Kamakaka, R.T.2
  • 79
    • 84863351692 scopus 로고    scopus 로고
    • Structure of C-terminal tandem BRCT repeats of Rtt107 protein reveals critical role in interaction with phosphorylated histoneH2AduringDNAdamage repair
    • Li X, Liu K, Li F, Wang J, Huang H, Wu J, Shi Y. 2012. Structure of C-terminal tandem BRCT repeats of Rtt107 protein reveals critical role in interaction with phosphorylated histoneH2AduringDNAdamage repair. J. Biol. Chem. 287:9137-9146. http://dx.doi.org/10.1074/jbc.M111. 311860.
    • (2012) J. Biol. Chem. , vol.287 , pp. 9137-9146
    • Li, X.1    Liu, K.2    Li, F.3    Wang, J.4    Huang, H.5    Wu, J.6    Shi, Y.7
  • 80
    • 48249141027 scopus 로고    scopus 로고
    • Replication stalling at unstable inverted repeats: Interplay between DNA hairpins and fork stabilizing proteins
    • Voineagu I, Narayanan V, Lobachev KS, Mirkin SM. 2008. Replication stalling at unstable inverted repeats: interplay between DNA hairpins and fork stabilizing proteins. Proc. Natl. Acad. Sci. U. S. A. 105:9936-9941. http://dx.doi.org/10.1073/pnas.0804510105.
    • (2008) Proc. Natl. Acad. Sci. U. S. A. , vol.105 , pp. 9936-9941
    • Voineagu, I.1    Narayanan, V.2    Lobachev, K.S.3    Mirkin, S.M.4
  • 81
    • 17644380628 scopus 로고    scopus 로고
    • Small interfering RNAs that trigger posttranscriptional gene silencing are not required for the histone H3 Lys9 methylation necessary for transgenic tandem repeat stabilization in Neurospora crassa
    • Chicas A, Forrest EC, Sepich S, Cogoni C, Macino G. 2005. Small interfering RNAs that trigger posttranscriptional gene silencing are not required for the histone H3 Lys9 methylation necessary for transgenic tandem repeat stabilization in Neurospora crassa. Mol. Cell. Biol. 25:3793- 3801. http://dx.doi.org/10.1128/MCB.25.9.3793-3801.2005.
    • (2005) Mol. Cell. Biol. , vol.25 , pp. 3793-3801
    • Chicas, A.1    Forrest, E.C.2    Sepich, S.3    Cogoni, C.4    McIno, G.5
  • 83
    • 82555187019 scopus 로고    scopus 로고
    • Structural basis of gammaH2AX recognition by human PTIP BRCT5-BRCT6 domains in the DNA damage response pathway
    • Yan W, Shao Z, Li F, Niu L, Shi Y, Teng M, Li X. 2011. Structural basis of gammaH2AX recognition by human PTIP BRCT5-BRCT6 domains in the DNA damage response pathway. FEBS Lett. 585:3874-3879. http://dx. doi.org/10.1016/j.febslet.2011.10.045.
    • (2011) FEBS Lett. , vol.585 , pp. 3874-3879
    • Yan, W.1    Shao, Z.2    Li, F.3    Niu, L.4    Shi, Y.5    Teng, M.6    Li, X.7
  • 85
    • 33845209389 scopus 로고    scopus 로고
    • Rtt107/Esc4 binds silent chromatin and DNA repair proteins using different BRCT motifs
    • Zappulla DC, Maharaj AS, Connelly JJ, Jockusch RA, Sternglanz R. 2006. Rtt107/Esc4 binds silent chromatin and DNA repair proteins using different BRCT motifs. BMC Mol. Biol. 7:40. http://dx.doi.org/10.1186 /1471-2199-7-40.
    • (2006) BMC Mol. Biol. , vol.7 , pp. 40
    • Zappulla, D.C.1    Maharaj, A.S.2    Connelly, J.J.3    Jockusch, R.A.4    Sternglanz, R.5
  • 86
    • 84875234378 scopus 로고    scopus 로고
    • gammaH2A-binding protein Brc1 affects centromere function in fission yeast
    • Lee SY, Rozenzhak S, Russell P. 2013. gammaH2A-binding protein Brc1 affects centromere function in fission yeast. Mol. Cell. Biol. 33:1410-1416. http://dx.doi.org/10.1128/MCB.01654-12.
    • (2013) Mol. Cell. Biol. , vol.33 , pp. 1410-1416
    • Lee, S.Y.1    Rozenzhak, S.2    Russell, P.3
  • 87
    • 84878572731 scopus 로고    scopus 로고
    • Brc1 links replication stress response and centromere function
    • Lee SY, Russell P. 2013. Brc1 links replication stress response and centromere function. Cell Cycle 12:1665-1671. http://dx.doi.org/10.4161/cc. 24900.
    • (2013) Cell Cycle , vol.12 , pp. 1665-1671
    • Lee, S.Y.1    Russell, P.2
  • 88
    • 84875811148 scopus 로고    scopus 로고
    • Replication fork stability is essential for the maintenance of centromere integrity in the absence of heterochromatin
    • Li PC, Petreaca RC, Jensen A, Yuan JP, Green MD, Forsburg SL. 2013. Replication fork stability is essential for the maintenance of centromere integrity in the absence of heterochromatin. Cell Rep. 3:638-645. http: //dx.doi.org/10.1016/j.celrep.2013.02.007.
    • (2013) Cell Rep. , vol.3 , pp. 638-645
    • Li, P.C.1    Petreaca, R.C.2    Jensen, A.3    Yuan, J.P.4    Green, M.D.5    Forsburg, S.L.6
  • 89
    • 84893810363 scopus 로고    scopus 로고
    • Dynamics of yeast histone H2A and H2B phosphorylation in response to a double-strand break
    • Lee CS, Lee K, Legube G, Haber JE. 2014. Dynamics of yeast histone H2A and H2B phosphorylation in response to a double-strand break. Nat. Struct. Mol. Biol. 21:103-109. http://dx.doi.org/10.1038/nsmb.2737.
    • (2014) Nat. Struct. Mol. Biol. , vol.21 , pp. 103-109
    • Lee, C.S.1    Lee, K.2    Legube, G.3    Haber, J.E.4

* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.