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Volumn 25, Issue 8, 2014, Pages 651-671

Docking-based 3D-QSAR study of pyridyl aminothiazole derivatives as checkpoint kinase 1 inhibitors

Author keywords

3D QSAR; Chk1; CoMFA; CoMSIA; docking; pyridyl aminothiazoles

Indexed keywords

COMPUTATIONAL CHEMISTRY; HYDROGEN BONDS; STATISTICAL METHODS;

EID: 84907431311     PISSN: 1062936X     EISSN: 1029046X     Source Type: Journal    
DOI: 10.1080/1062936X.2014.923040     Document Type: Article
Times cited : (15)

References (48)
  • 1
    • 74949120032 scopus 로고    scopus 로고
    • Targeting the checkpoint kinase Chk1 in cancer therapy
    • C. Merry, K. Fu, J. Wang, I.J. Yeh, and Y. Zhang, Targeting the checkpoint kinase Chk1 in cancer therapy, Cell Cycle 9 (2010), pp. 279–283.
    • (2010) Cell Cycle , vol.9 , pp. 279-283
    • Merry, C.1    Fu, K.2    Wang, J.3    Yeh, I.J.4    Zhang, Y.5
  • 2
    • 9244251125 scopus 로고    scopus 로고
    • Cell-cycle checkpoints and cancer
    • M.B. Kastan and J. Bartek, Cell-cycle checkpoints and cancer, Nature 432 (2004), pp. 316–323.
    • (2004) Nature , vol.432 , pp. 316-323
    • Kastan, M.B.1    Bartek, J.2
  • 4
    • 0034707047 scopus 로고    scopus 로고
    • The DNA damage response: Putting checkpoints in perspective
    • B.B. Zhou and S.J. Elledge, The DNA damage response: Putting checkpoints in perspective, Nature 408 (2000), pp. 433–439.
    • (2000) Nature , vol.408 , pp. 433-439
    • Zhou, B.B.1    Elledge, S.J.2
  • 6
    • 0034967556 scopus 로고    scopus 로고
    • ATR-mediated checkpoint pathways regulate phosphorylation and activation of human Chk
    • H. Zhao and H. Piwnica-Worms, ATR-mediated checkpoint pathways regulate phosphorylation and activation of human Chk, Mol. Cell Biol. 21 (2001), pp. 4129–4139.
    • (2001) Mol. Cell Biol. , vol.21 , pp. 4129-4139
    • Zhao, H.1    Piwnica-Worms, H.2
  • 7
    • 0036902096 scopus 로고    scopus 로고
    • Phosphorylation activates Chk1 and is required for checkpoint-mediated cell cycle arrest
    • H. Capasso, C. Palermo, S. Wan, H. Rao, U.P. John, M.J. O’Connell, and N.C. Walworth, Phosphorylation activates Chk1 and is required for checkpoint-mediated cell cycle arrest, J. Cell Sci. 115 (2002), pp. 4555–4564.
    • (2002) J. Cell Sci. , vol.115 , pp. 4555-4564
    • Capasso, H.1    Palermo, C.2    Wan, S.3    Rao, H.4    John, U.P.5    O’Connell, M.J.6    Walworth, N.C.7
  • 8
    • 34147206546 scopus 로고    scopus 로고
    • Specific role of Chk1 phosphorylations in cell survival and checkpoint activation
    • H. Niida, Y. Katsuno, B. Banerjee, M.P. Hande, and M. Nakanishi, Specific role of Chk1 phosphorylations in cell survival and checkpoint activation, Mol. Cell Biol. 27 (2007), pp. 2572–2581.
    • (2007) Mol. Cell Biol. , vol.27 , pp. 2572-2581
    • Niida, H.1    Katsuno, Y.2    Banerjee, B.3    Hande, M.P.4    Nakanishi, M.5
  • 9
    • 34147108049 scopus 로고    scopus 로고
    • Structure-based design, synthesis, and biological evaluation of potent and selective macrocyclic checkpoint kinase 1 inhibitors
    • Z.-F. Tao, L. Wang, K.D. Stewart, Z. Chen, W. Gu, M.-H. Bui, P. Merta, H. Zhang, P. Kovar, and E. Johnson, Structure-based design, synthesis, and biological evaluation of potent and selective macrocyclic checkpoint kinase 1 inhibitors, J. Med. Chem. 50 (2007), pp. 1514–1527.
    • (2007) J. Med. Chem. , vol.50 , pp. 1514-1527
    • Tao, Z.-F.1    Wang, L.2    Stewart, K.D.3    Chen, Z.4    Gu, W.5    Bui, M.-H.6    Merta, P.7    Zhang, H.8    Kovar, P.9    Johnson, E.10
  • 11
    • 47149114403 scopus 로고    scopus 로고
    • Novel inhibitors of checkpoint kinase 1
    • K.L. Arrington and V.Y. Dudkin, Novel inhibitors of checkpoint kinase 1, ChemMedChem 2 (2007), pp. 1571–1585.
    • (2007) ChemMedChem , vol.2 , pp. 1571-1585
    • Arrington, K.L.1    Dudkin, V.Y.2
  • 16
    • 1842450527 scopus 로고    scopus 로고
    • Identification of compounds with nanomolar binding affinity for checkpoint kinase-1 using knowledge-based virtual screening
    • P.D. Lyne, P.W. Kenny, D.A. Cosgrove, C. Deng, S. Zabludoff, J.J. Wendoloski, and S. Ashwell, Identification of compounds with nanomolar binding affinity for checkpoint kinase-1 using knowledge-based virtual screening, J. Med. Chem. 47 (2004), pp. 1962–1968.
    • (2004) J. Med. Chem. , vol.47 , pp. 1962-1968
    • Lyne, P.D.1    Kenny, P.W.2    Cosgrove, D.A.3    Deng, C.4    Zabludoff, S.5    Wendoloski, J.J.6    Ashwell, S.7
  • 17
    • 21244496076 scopus 로고    scopus 로고
    • Structure-based design of novel Chk1 inhibitors: Insights into hydrogen bonding and protein-ligand affinity
    • N. Foloppe, L.M. Fisher, R. Howes, P. Kierstan, A. Potter, A.G. Robertson, and A.E. Surgenor, Structure-based design of novel Chk1 inhibitors: Insights into hydrogen bonding and protein-ligand affinity, J. Med. Chem. 48 (2005), pp. 4332–4345.
    • (2005) J. Med. Chem. , vol.48 , pp. 4332-4345
    • Foloppe, N.1    Fisher, L.M.2    Howes, R.3    Kierstan, P.4    Potter, A.5    Robertson, A.G.6    Surgenor, A.E.7
  • 31
    • 84905652385 scopus 로고    scopus 로고
    • Modeling study of phenylsulfonylfuroxan derivatives as P-gp inhibitors: A combined approach of CoMFA, CoMSIA and HQSAR
    • C. Gadhe, A. Balupuri, P. Balasubramanian, and S. Cho, Modeling study of phenylsulfonylfuroxan derivatives as P-gp inhibitors: A combined approach of CoMFA, CoMSIA and HQSAR, Anticancer Agents Med. Chem. (2013), doi:10.2174/18715206113136660335.
    • (2013) Anticancer Agents Med. Chem.
    • Gadhe, C.1    Balupuri, A.2    Balasubramanian, P.3    Cho, S.4
  • 32
    • 84889963135 scopus 로고    scopus 로고
    • In silico study on indole derivatives as anti HIV-1 agents: A combined docking, molecular dynamics and 3D-QSAR study
    • A. Balupuri, C.G. Gadhe, P.K. Balasubramanian, G. Kothandan, and S.J. Cho, In silico study on indole derivatives as anti HIV-1 agents: A combined docking, molecular dynamics and 3D-QSAR study, Arch. Pharmacal. Res. (2013), doi:10.1007/s12272-013-0313-1.
    • (2013) Arch. Pharmacal. Res.
    • Balupuri, A.1    Gadhe, C.G.2    Balasubramanian, P.K.3    Kothandan, G.4    Cho, S.J.5
  • 33
    • 84865699816 scopus 로고    scopus 로고
    • Large variation in electrostatic contours upon addition of steric parameters and the effect of charge calculation schemes in CoMFA on mutagenicity of MX analogues
    • C.G. Gadhe, G. Kothandan, and S.J. Cho, Large variation in electrostatic contours upon addition of steric parameters and the effect of charge calculation schemes in CoMFA on mutagenicity of MX analogues, Mol. Simulat. 38 (2012), pp. 861–871.
    • (2012) Mol. Simulat. , vol.38 , pp. 861-871
    • Gadhe, C.G.1    Kothandan, G.2    Cho, S.J.3
  • 34
    • 0023751431 scopus 로고
    • Comparative molecular field analysis (CoMFA). 1. Effect of shape on binding of steroids to carrier proteins
    • R.D. Cramer, D.E. Patterson, and J.D. Bunce, Comparative molecular field analysis (CoMFA). 1. Effect of shape on binding of steroids to carrier proteins, J. Am. Chem. Soc. 110 (1988), pp. 5959–5967.
    • (1988) J. Am. Chem. Soc. , vol.110 , pp. 5959-5967
    • Cramer, R.D.1    Patterson, D.E.2    Bunce, J.D.3
  • 35
    • 0027944195 scopus 로고
    • Molecular similarity indices in a comparative analysis (CoMSIA) of drug molecules to correlate and predict their biological activity
    • G. Klebe, U. Abraham, and T. Mietzner, Molecular similarity indices in a comparative analysis (CoMSIA) of drug molecules to correlate and predict their biological activity, J. Med. Chem. 37 (1994), pp. 4130–4146.
    • (1994) J. Med. Chem. , vol.37 , pp. 4130-4146
    • Klebe, G.1    Abraham, U.2    Mietzner, T.3
  • 36
    • 84882686304 scopus 로고    scopus 로고
    • Tripos Associates, St Louis, MO, software available at
    • Tripos Associates, SYBYL X molecular modeling software, version 1.2, Tripos Associates, St Louis, MO, 2011; software available at www.tripos.com.
    • (2011) SYBYL X molecular modeling software, version 1.2
  • 37
    • 84988115618 scopus 로고
    • Validation of the general purpose Tripos 5.2 force field
    • M. Clark, R.D. Cramer, and N. Van Opdenbosch, Validation of the general purpose Tripos 5.2 force field, J. Comput. Chem. 10 (1989), pp. 982–1012.
    • (1989) J. Comput. Chem. , vol.10 , pp. 982-1012
    • Clark, M.1    Cramer, R.D.2    Van Opdenbosch, N.3
  • 38
    • 33846446220 scopus 로고
    • Restart procedures for the conjugate gradient method
    • M.J.D. Powell, Restart procedures for the conjugate gradient method, Math. Prog. 12 (1977), pp. 241–254.
    • (1977) Math. Prog. , vol.12 , pp. 241-254
    • Powell, M.J.D.1
  • 39
    • 49149147973 scopus 로고
    • Iterative partial equalization of orbital electronegativity—A rapid access to atomic charges
    • J. Gasteiger and M. Marsili, Iterative partial equalization of orbital electronegativity—A rapid access to atomic charges, Tetrahedron 36 (1980), pp. 3219–3228.
    • (1980) Tetrahedron , vol.36 , pp. 3219-3228
    • Gasteiger, J.1    Marsili, M.2
  • 41
    • 0033397980 scopus 로고    scopus 로고
    • Python: A programming language for software integration and development
    • M.F. Sanner, Python: A programming language for software integration and development, J. Mol. Graph. Model. 17 (1999), pp. 57–61.
    • (1999) J. Mol. Graph. Model. , vol.17 , pp. 57-61
    • Sanner, M.F.1
  • 42
    • 11644261806 scopus 로고    scopus 로고
    • Automated docking using a Lamarckian genetic algorithm and an empirical binding free energy function
    • G.M. Morris, D.S. Goodsell, R.S. Halliday, R. Huey, W.E. Hart, R.K. Belew, and A.J. Olson, Automated docking using a Lamarckian genetic algorithm and an empirical binding free energy function, J. Comput. Chem. 19 (1998), pp. 1639–1662.
    • (1998) J. Comput. Chem. , vol.19 , pp. 1639-1662
    • Morris, G.M.1    Goodsell, D.S.2    Halliday, R.S.3    Huey, R.4    Hart, W.E.5    Belew, R.K.6    Olson, A.J.7
  • 44
    • 0001681052 scopus 로고
    • The collinearity problem in linear regression. The partial least squares (PLS) approach to generalized inverses
    • S. Wold, A. Ruhe, H. Wold, and I. Dunn, WJ, The collinearity problem in linear regression. The partial least squares (PLS) approach to generalized inverses, SIAM J. Sci. Comput. 5 (1984), pp. 735–743.
    • (1984) SIAM J. Sci. Comput. , vol.5 , pp. 735-743
    • Wold, S.1    Ruhe, A.2    Wold, H.3    Dunn, WJ, I.4
  • 45
    • 84987100711 scopus 로고
    • Crossvalidation, bootstrapping, and partial least squares compared with multiple regression in conventional QSAR studies
    • R.D. Cramer, J.D. Bunce, D.E. Patterson, and I.E. Frank, Crossvalidation, bootstrapping, and partial least squares compared with multiple regression in conventional QSAR studies, Quant. Struct. Act. Relat. 7 (1988), pp. 18–25.
    • (1988) Quant. Struct. Act. Relat. , vol.7 , pp. 18-25
    • Cramer, R.D.1    Bunce, J.D.2    Patterson, D.E.3    Frank, I.E.4
  • 47
    • 84875893961 scopus 로고    scopus 로고
    • 2’ metrics for judging quality of quantitative structure–activity relationship predictions: Emphasis on scaling of response data
    • 2’ metrics for judging quality of quantitative structure–activity relationship predictions: Emphasis on scaling of response data, J. Comput. Chem. 34 (2013), pp. 1071–1082.
    • (2013) J. Comput. Chem. , vol.34 , pp. 1071-1082
    • Roy, K.1    Chakraborty, P.2    Mitra, I.3    Ojha, P.K.4    Kar, S.5    Das, R.N.6
  • 48
    • 84892592182 scopus 로고    scopus 로고
    • Exploring structural requirements of leads for improving activity and selectivity against CDK5/p25 in Alzheimer’s disease: An in silico approach
    • P. Ambure and K. Roy, Exploring structural requirements of leads for improving activity and selectivity against CDK5/p25 in Alzheimer’s disease: An in silico approach, RSC Adv. 4 (2014), pp. 6702–6709.
    • (2014) RSC Adv. , vol.4 , pp. 6702-6709
    • Ambure, P.1    Roy, K.2


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