메뉴 건너뛰기




Volumn 38, Issue 11, 2012, Pages 861-871

Large variation in electrostatic contours upon addition of steric parameters and the effect of charge calculation schemes in CoMFA on mutagenicity of MX analogues

Author keywords

charge schemes; DFT; empirical; HF; MP2; semi empirical

Indexed keywords

CHARGE SCHEMES; DFT; EMPIRICAL; MP2; SEMI-EMPIRICAL;

EID: 84865699816     PISSN: 08927022     EISSN: 10290435     Source Type: Journal    
DOI: 10.1080/08927022.2012.659182     Document Type: Article
Times cited : (32)

References (41)
  • 1
    • 84888246185 scopus 로고    scopus 로고
    • Population analysis and electron densities from quantum mechanics
    • K.B. Lipkowitz, and D.B. Boyd, eds., ed., John Wiley & Sons, Inc., Hoboken, NJ, Chapter 3
    • S.M. Bachrach, Population analysis and electron densities from quantum mechanics, in Reviews in Computational Chemistry, K.B. Lipkowitz, and D.B. Boyd, eds., ed.,Vol. 5, John Wiley & Sons, Inc., Hoboken, NJ, 2007, pp. 171-227, Chapter 3.
    • (2007) Reviews in Computational Chemistry , vol.5 , pp. 171-227
    • Bachrach, S.M.1
  • 2
    • 11644266970 scopus 로고
    • Electronic population analysis on lcao-mo molecular wave functions
    • R.S. Mttlliken, Electronic population analysis on lcao-mo molecular wave functions, J. Chem. Phys. 23 (1955), pp. 1833-1840.
    • (1955) J. Chem. Phys. , vol.23 , pp. 1833-1840
    • Mttlliken, R.S.1
  • 4
    • 33845282074 scopus 로고
    • Barriers to rotation adjacent to double bonds. III: The C-O barrier in formic acid, methyl formate, acetic acid, and methyl acetate. The origin of ester and amide resonance
    • K.B. Wiberg and K.E. Laidig, Barriers to rotation adjacent to double bonds. III: The C-O barrier in formic acid, methyl formate, acetic acid, and methyl acetate. The origin of ester and amide resonance, J. Am. Chem. Soc. 109 (1987), pp. 5935-5943.
    • (1987) J. Am. Chem. Soc. , vol.109 , pp. 5935-5943
    • Wiberg, K.B.1    Laidig, K.E.2
  • 5
    • 0000667030 scopus 로고
    • Application of RESP charges to calculate conformational energies, hydrogen bond energies, and free energies of salvation
    • W.D. Cornell, P. Cieplak, C.I. Bayly, and P.A. Kollmann, Application of RESP charges to calculate conformational energies, hydrogen bond energies, and free energies of solvation, J. Am. Chem. Soc. 115 (1993), pp. 9620-9631.
    • (1993) J. Am. Chem. Soc. , vol.115 , pp. 9620-9631
    • Cornell, W.D.1    Cieplak, P.2    Bayly, C.I.3    Kollmann, P.A.4
  • 6
    • 0036890178 scopus 로고    scopus 로고
    • Fast, efficient generation of high quality atomic charges. AM1 BCC model: II. Parameterization and validation
    • A. Jakalian, D.B. Jack, and C.I. Bayly, Fast, efficient generation of high quality atomic charges. AM1 BCC model: II. Parameterization and validation, J. Comp. Chem. 23 (2002), pp. 1623-1641.
    • (2002) J. Comp. Chem. , vol.23 , pp. 1623-1641
    • Jakalian, A.1    Jack, D.B.2    Bayly, C.I.3
  • 7
    • 0344111598 scopus 로고
    • Atomic polar tensors and the effective charge-charge flux model of infrared intensities
    • J.C. Decius and G.B. Mast, Atomic polar tensors and the effective charge-charge flux model of infrared intensities, J. Mol. Spectr. 70 (1978), pp. 294-306.
    • (1978) J. Mol. Spectr. , vol.70 , pp. 294-306
    • Decius, J.C.1    Mast, G.B.2
  • 8
    • 1542530886 scopus 로고    scopus 로고
    • CoMFA modeling of human catechol Omethyltransferase enzyme kinetics
    • J. Sipiläand J. Taskinen, CoMFA modeling of human catechol Omethyltransferase enzyme kinetics, J. Chem. Inf. Comput. Sci. 44 (2004), pp. 97-104.
    • (2004) J. Chem. Inf. Comput. Sci. , vol.44 , pp. 97-104
    • Sipilä, J.1    Taskinen, J.2
  • 9
    • 77349088235 scopus 로고    scopus 로고
    • A comparison of different electrostatic potentials on prediction accuracy in CoMFA and CoMSIA studies
    • K.C. Tsai, Y.C. Chen, N.W. Hsiao, C.L. Wang, C.L. Lin, Y.C. Lee, M. Li, and B. Wang, A comparison of different electrostatic potentials on prediction accuracy in CoMFA and CoMSIA studies, Eur. J. Med. Chem. 45 (2010), pp. 1544-1551.
    • (2010) Eur. J. Med. Chem. , vol.45 , pp. 1544-1551
    • Tsai, K.C.1    Chen, Y.C.2    Hsiao, N.W.3    Wang, C.L.4    Lin, C.L.5    Lee, Y.C.6    Li, M.7    Wang, B.8
  • 10
    • 65249127526 scopus 로고    scopus 로고
    • Partial charge calculation method affects CoMFA QSAR prediction accuracy
    • R.R. Mittal, L. Harris, R.A. McKinnon, and M.J. Sorich, Partial charge calculation method affects CoMFA QSAR prediction accuracy, J. Chem. Inf. Model. 49 (2009), pp. 704-709.
    • (2009) J. Chem. Inf. Model. , vol.49 , pp. 704-709
    • Mittal, R.R.1    Harris, L.2    McKinnon, R.A.3    Sorich, M.J.4
  • 11
    • 85033862992 scopus 로고    scopus 로고
    • Different electrostatic descriptors in comparative molecular field analysis: A comparison of molecular electrostatic and coulomb potentials
    • R.T. Kroemer, P. Hecht, and K.R. Liedl, Different electrostatic descriptors in comparative molecular field analysis: A comparison of molecular electrostatic and Coulomb potentials, J. Comput. Chem. 17 (1996), pp. 1296-1308. (Pubitemid 126576746)
    • (1996) Journal of Computational Chemistry , vol.17 , Issue.11 , pp. 1296-1308
    • Kroemer, R.T.1    Hecht, P.2    Liedl, K.R.3
  • 13
    • 0020533372 scopus 로고
    • Revised methods for the Salmonella mutagenicity test
    • D.M. Maron and B.N. Ames, Revised methods for the salmonella mutagenicity test, Mutat. Res. 113 (1983), pp. 173-215. (Pubitemid 13120319)
    • (1983) Mutation Research , vol.113 , Issue.3-4 , pp. 173-215
    • Maron, D.M.1    Ames, B.N.2
  • 14
    • 0033396647 scopus 로고    scopus 로고
    • Identification of adducts formed in reactions of 2'-deoxyadenosine and calf thymus DNA with the bacterial mutagen 3-chloro-4-(chloromethyl)-5- hydroxy-2(5h)-furanone
    • DOI 10.1021/tx990116c
    • (a) T. Munter, F.L. Curieux, R. Sjoholm, and L. Kronberg, Identification of adducts formed in reactions of 20-deoxyadenosine and calf thymus DNA with the bacterial mutagen 3-chloro-4- (chloromethyl)-5-hydroxy-2 (5H)-furanone, Chem. Res. Toxicol. 12 (1999), pp. 1205-1212. (Pubitemid 30013531)
    • (1999) Chemical Research in Toxicology , vol.12 , Issue.12 , pp. 1205-1212
    • Munter, T.1    Le Curieux, F.2    Sjoholm, R.3    Kronberg, L.4
  • 15
    • 0031912198 scopus 로고    scopus 로고
    • Reaction of the potent bacterial mutagen 3-chloro-4-(dichloromethyl)-5- hydroxy-2(5H)-furanone (MX) with 20-deoxyadenosine and calf thymus DNA: Identification of fluorescent propenoformyl derivatives
    • (b) T. Munter, F.L. Curieux, R. Sjoholm, and L. Kronberg, Reaction of the potent bacterial mutagen 3-chloro- 4-(dichloromethyl)-5-hydroxy-2(5H)-furanone (MX) with 20-deoxyadenosine and calf thymus DNA: Identification of fluorescent propenoformyl derivatives, Chem. Res. Toxicol. 11 (1998), pp. 226-233
    • Chem. Res. Toxicol. , vol.11 , Issue.1998 , pp. 226-233
    • Munter, T.1    Curieux, F.L.2    Sjoholm, R.3    Kronberg, L.4
  • 16
    • 10644258705 scopus 로고    scopus 로고
    • Comarative molecular field analysis CoMFA and comarative molecular similarity index analysis CoMSIA study of mutagen X
    • S.J. Bang and S.J. Cho, Comparative molecular field analysis (CoMFA) and comparative molecular similarity index analysis (CoMSIA) study of mutagen X, Bull. Korean Chem. Soc. 25 (2004), pp. 1525-1530.
    • (2004) Bull Korean Chem Soc , vol.25 , pp. 525-1530
    • Bang, S.J.1    Cho, S.J.2
  • 17
    • 0029974975 scopus 로고    scopus 로고
    • Comparative molecular field analysis (CoMFA) of MX compounds using different semi-empirical methods: LUMO field and its correlation with mutagenic activity
    • DOI 10.1002/qsar.19960150302
    • C. Navajas, A. Poso, K. Tuppurainen, and J. Gynther, Comparative molecular field analysis (CoMFA) of MX compounds using different semi empirical methods: LUMO field and its correlation with mutagenic activity, Quant. Struct.-Act. Relat. 15 (1996), pp. 189-193. (Pubitemid 26225961)
    • (1996) Quantitative Structure-Activity Relationships , vol.15 , Issue.3 , pp. 189-193
    • Navajas, C.1    Poso, A.2    Tuppurainen, K.3    Gynther, J.4
  • 19
    • 0027209171 scopus 로고
    • The probability of chance correlation using partial least squares (PLS)
    • M. Clark, and R.D. Cramer, III, The probability of chance correlation using partial least squares (PLS), Quant. Struct.-Act. Relat. 12 (1993), pp. 137-145. (Pubitemid 23203836)
    • (1993) Quantitative Structure-Activity Relationships , vol.12 , Issue.2 , pp. 137-145
    • Clark, M.1    Cramer III, R.D.2
  • 20
    • 20844450385 scopus 로고    scopus 로고
    • Statistical variation in progressive scrambling
    • R.D. Clark and P.C. Fox, Statistical variation in progressive scrambling, J. Comput.-Aided Mol. Des. 18 (2004), pp. 563-576.
    • (2004) J. Comput.-Aided Mol. Des. , vol.18 , pp. 563-576
    • Clark, R.D.1    Fox, P.C.2
  • 21
    • 0027338227 scopus 로고
    • Determination of chlorinated furanones, hydroxyfuranones, and butenedioic acids in chlorine-treated water and in pulp bleaching liquor
    • (a) L. Kronberg and R. Franzen, Determination of chlorinated furanones, hydroxyfuranones, and butenedioic acids in chlorinetreated water and in pulp bleaching liquor, Environ. Sci. Technol. 27 (1993), pp. 1811-1818. (Pubitemid 23272250)
    • (1993) Environmental Science and Technology , vol.27 , Issue.9 , pp. 1811-1818
    • Kronberg, L.1    Franzen, R.2
  • 22
  • 23
    • 0023550393 scopus 로고
    • Mutagenicity of chlorine substituted furanones and their inactivation by reaction with nucleophiles
    • (c) Y. Ishiguro, C.W. Dence, R.T. Lalonde, and J. Santodonato, Mutagenicity of chlorine substituted furanones and their inactivation by reaction with nucleophiles, Environ. Toxicol. Chem. 6 (1987), pp. 935-946.
    • (1987) Environ. Toxicol. Chem. , vol.6 , pp. 935-946
    • Ishiguro, Y.1    Dence, C.W.2    Lalonde, R.T.3    Santodonato, J.4
  • 24
    • 0023836248 scopus 로고
    • Mutagenic potency of chlorofuranones and related compounds in Salmonella
    • (d) Y. Ishiguro, J. Santodonato, and M.W. Neal, Mutagenic potency of chlorofuranones and related compounds in Salmonella, Environ. Mol. Mutagen. 11 (1988), pp. 225-234. (Pubitemid 18086958)
    • (1988) Environmental and Molecular Mutagenesis , vol.11 , Issue.2 , pp. 225-234
    • Ishiguro, Y.1    Santodonato, J.2    Neal, M.W.3
  • 25
    • 0031445358 scopus 로고    scopus 로고
    • Bromine-, chlorine-, and mixed halogen-substituted 4-methyl-2(5H)- furanones: Synthesis and mutagenic effects of halogen and hydroxyl group replacements
    • DOI 10.1021/tx9701283
    • (e) R.T. LaLonde, L. Bu, A. Henwood, J. Fiumano, and L. Zhang, Bromine-, chlorine-, and mixed halogen-substituted 4-methyl-2 (5 h)-furanones: Synthesis and mutagenic effects of halogen and hydroxyl group replacements, Chem. Res. Toxicol. 10 (1997), pp. 1427-1436. (Pubitemid 28018933)
    • (1997) Chemical Research in Toxicology , vol.10 , Issue.12 , pp. 1427-1436
    • LaLonde, R.T.1    Bu, L.2    Henwood, A.3    Fiumano, J.4    Zhang, L.5
  • 26
    • 0026062623 scopus 로고
    • Structure-activity relationships of bacterial mutagens related to 3-chloro-4-(dichloromethyl)-5- hydroxy-2 (5H)-furanone: An emphasis on the effect of stepwise removal of chlorine from the dichloromethyl group
    • (f) R.T. LaLonde, G.P. Cook, H. Perakyla, and L. Bu, Structure-activity relationships of bacterial mutagens related to 3-chloro-4-(dichloromethyl)-5- hydroxy-2 (5H)-furanone: An emphasis on the effect of stepwise removal of chlorine from the dichloromethyl group, Chem. Res. Toxicol. 4 (1991), pp. 540-545.
    • (1991) Chem. Res. Toxicol. , vol.4 , pp. 540-545
    • Lalonde, R.T.1    Cook, G.P.2    Perakyla, H.3    Bu, L.4
  • 27
    • 0026739226 scopus 로고
    • A study of inactivation reactions of N-acetylcysteine with mucochloric acid, a mutagenic product of the chlorination of humic substances in water
    • (g) R.T. LaLonde and S. Xie, A study of inactivation reactions of N-acetylcysteine with mucochloric acid, a mutagenic product of the chlorination of humic substances in water, Chem. Res. Toxicol. 5 (1992), pp. 618-624.
    • (1992) Chem. Res. Toxicol. , vol.5 , pp. 618-624
    • Lalonde, R.T.1    Xie, S.2
  • 28
    • 0024373422 scopus 로고
    • Chemistry of mutagenic by-products of water chlorination
    • DOI 10.1016/0048-9697(89)90128-9
    • (h) L. Kronberg and R.F. Christman, Chemistry of mutagenic by-products of water chlorination, Sci. Total Environ. 81 (1989), pp. 219-230. (Pubitemid 19152324)
    • (1989) Science of the Total Environment , vol.81-82 , pp. 219-230
    • Kronberg, L.1    Christman, R.F.2
  • 29
    • 0026062406 scopus 로고
    • Identification of oxidized and reduced forms of the strong bacterial mutagen (Z)-2- chloro-3-(dichloromethyl)-4-oxobutenoic acid (MX) in extracts of chlorine-treated water
    • (i) L. Kronberg, R.F. Christman, R. Singh, and L.M. Ball, Identification of oxidized and reduced forms of the strong bacterial mutagen (Z)-2- chloro-3-(dichloromethyl)-4-oxobutenoic acid (MX) in extracts of chlorine-treated water, Environ. Sci. Technol. 25 (1991), pp. 99- 104.
    • (1991) Environ. Sci. Technol. , vol.25 , pp. 99-104
    • Kronberg, L.1    Christman, R.F.2    Singh, R.3    Ball, L.M.4
  • 30
    • 0027495668 scopus 로고
    • Test of chiral recognition in the Salmonella typhimurium (TA100) mutagenicity of mucochloric acid-cysteine adducts
    • DOI 10.1002/em.2850220311
    • (j) R.T. Lalonde, S. Xie, and L. Bu, Test of chiral recognition in the salmonella typhimurium (TA100) mutagenicity of mucochloric acid cysteine adducts, Environ. Mol. Mutagen. 22 (1993), pp. 181- 187. (Pubitemid 23330784)
    • (1993) Environmental and Molecular Mutagenesis , vol.22 , Issue.3 , pp. 181-187
    • LaLonde, R.T.1    Xie, S.2    Bu, L.3
  • 31
    • 0025976305 scopus 로고
    • Effect on mutagenicity of the stepwise removal of hydroxyl group and chlorine atoms from 3-chloro-4-(dichloromethyl)-5-hydroxy-2 (5H)-furanone: Carbon-13 NMR chemical shifts as determinants of mutagenicity
    • (k) R.T. LaLonde, G.P. Cook, H. Perakyla, and C.W. Dence, Effect on mutagenicity of the stepwise removal of hydroxyl group and chlorine atoms from 3-chloro-4-(dichloromethyl)-5-hydroxy-2 (5H)-furanone: Carbon-13 NMR chemical shifts as determinants of mutagenicity, Chem. Res. Toxicol. 4 (1991), pp. 35-40.
    • (1991) Chem. Res. Toxicol. , vol.4 , pp. 35-40
    • Lalonde, R.T.1    Cook, G.P.2    Perakyla, H.3    Dence, C.W.4
  • 32
    • 0023503088 scopus 로고
    • Studies on the potent bacterial mutagen, 3-chloro-4-(dichloromethyl)-5- hydroxy-2(5H)-furanone: Aqueous stability, XAD recovery and analytical determination in drinking water and in chlorinated humic acid solutions
    • (l) J.R. Meier, R.B. Knohl, W.E. Coleman, H.P. Ringhand, J.W. Munch, W.H. Kaylor, R.P. Streicher, and F.C. Kopfler, Studies on the potent mutagen, 3-chloro-4-(dichloromethyl)-5-hydroxy-2 (5H)-furanone: Aqueous stability, XAD recovery and analytical determination in drinking water and in chlorinated humic acid solutions, Mutat. Res. 189 (1987), pp. 363-373. (Pubitemid 18008937)
    • (1987) Mutation Research , vol.189 , Issue.4 , pp. 363-373
    • Meier, J.R.1    Knohl, R.B.2    Coleman, W.E.3    Ringhand, H.P.4    Munch, J.W.5    Kaylor, W.H.6    Streicher, R.P.7    Kopfler, F.C.8
  • 33
    • 0027962458 scopus 로고
    • Interactive chlorine-by-bromine and hydrogen-by-hydroxyl group replacement effects in 2(5H)-furanone mutagenicity
    • DOI 10.1021/tx00042a010
    • (m) R.T. LaLonde and H.R. Leo, Interactive chlorine-by-bromine and hydrogen-by-hydroxyl group replacement effects in 2 (5H)-furanone mutagenicity, Chem. Res. Toxicol. 7 (1994), pp. 779-783. (Pubitemid 24370235)
    • (1994) Chemical Research in Toxicology , vol.7 , Issue.6 , pp. 779-783
    • LaLonde, R.T.1    Leo, H.R.2
  • 34
    • 0026100750 scopus 로고
    • Salmonella typhimurium (ta100) mutagenicity of 3 chloro 4 (dichloromethyl) 5 hydroxy 2 (5 h) furanone and its open and closed ring analogs
    • (n) R.T. Lalonde, G.P. Cook, H. Perakyla, C.W. Dence, J.G. Babish, and J.H. Carver, Salmonella typhimurium (ta100) mutagenicity of 3 chloro 4 (dichloromethyl) 5 hydroxy 2 (5 h) furanone and its open and closed ring analogs, Environ. Mol. Mutagen. 17 (1991), pp. 40-48.
    • (1991) Environ. Mol. Mutagen. , vol.17 , pp. 40-48
    • Lalonde, R.T.1    Cook, G.P.2    Perakyla, H.3    Dence, C.W.4    Babish, J.G.5    Carver, J.H.6
  • 35
    • 0042066652 scopus 로고    scopus 로고
    • Computational study of Mutagen X
    • (o) S.J. Cho, Computational study of Mutagen X, Bull. Korean Chem. Soc. 24 (2003), pp. 731-732.
    • (2003) Bull. Korean Chem. Soc. , vol.24 , pp. 731-732
    • Cho, S.J.1
  • 36
    • 67849101722 scopus 로고    scopus 로고
    • Semiempirical quantum chemical pm6 method augmented by dispersion and h-bonding correction terms reliably describes various types of noncovalent complexes
    • J. Rezac, J. Fanfrlik, D. Salahub, and P. Hobza, Semiempirical quantum chemical PM6 method augmented by dispersion and H-bonding correction terms reliably describes various types of noncovalent complexes, J. Chem. Theory Comput. 5 (2009), pp. 1749-1760.
    • (2009) J. Chem. Theory Comput. , vol.5 , pp. 1749-1760
    • Rezac, J.1    Fanfrlik, J.2    Salahub, D.3    Hobza, P.4
  • 37
    • 79957475328 scopus 로고    scopus 로고
    • Various partial charge schemes on 3D-QSAR models for P-gp inhibiting adamantyl derivatives
    • C.G. Gadhe, T. Madhavan, G. Kothandan, T.B. Lee, K. Lee, and S.J. Cho, Various partial charge schemes on 3D-QSAR models for P-gp inhibiting adamantyl derivatives, Bull. Korean Chem. Soc. 32 (2011), pp. 1604-1612.
    • (2011) Bull. Korean Chem. Soc. , vol.32 , pp. 1604-1612
    • Gadhe, C.G.1    Madhavan, T.2    Kothandan, G.3    Lee, T.B.4    Lee, K.5    Cho, S.J.6
  • 38
    • 73349120806 scopus 로고    scopus 로고
    • Stewart Computational Chemistry, Colorado Springs, CO, USA
    • J.J.P. Stewart, MOPAC2009, Stewart Computational Chemistry, Colorado Springs, CO, USA, HTTP://OpenMOPAC.net 2008.
    • (2008) MOPAC2009
    • Stewart, J.J.P.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.