메뉴 건너뛰기




Volumn 91, Issue , 2014, Pages 140-148

Evaluating fermentation effects on cell growth and crude extract metabolic activity for improved yeast cell-free protein synthesis

Author keywords

Cell free protein synthesis; Defined media; Enzyme biocatalysis; Fermentation; Growth kinetics; Modelling yeast

Indexed keywords

AMINO ACIDS; FERMENTATION; GROWTH KINETICS; METABOLISM; PHYSIOLOGY; YEAST;

EID: 84907335243     PISSN: 1369703X     EISSN: 1873295X     Source Type: Journal    
DOI: 10.1016/j.bej.2014.07.014     Document Type: Article
Times cited : (17)

References (52)
  • 1
    • 4644269746 scopus 로고    scopus 로고
    • High-throughput cell-free systems for synthesis of functionally active proteins
    • Spirin A.S. High-throughput cell-free systems for synthesis of functionally active proteins. Trends Biotechnol. 2004, 22:538-545.
    • (2004) Trends Biotechnol. , vol.22 , pp. 538-545
    • Spirin, A.S.1
  • 3
    • 84887113499 scopus 로고    scopus 로고
    • Applications of cell-free protein synthesis in synthetic biology: interfacing bio-machinery with synthetic environments
    • Lee K.H., Kim D.M. Applications of cell-free protein synthesis in synthetic biology: interfacing bio-machinery with synthetic environments. Biotechnol. J. 2013, 8:1292-1300.
    • (2013) Biotechnol. J. , vol.8 , pp. 1292-1300
    • Lee, K.H.1    Kim, D.M.2
  • 4
    • 83255164998 scopus 로고    scopus 로고
    • Cell-free synthetic biology: thinking outside the cell
    • Hodgman C.E., Jewett M.C. Cell-free synthetic biology: thinking outside the cell. Metab. Eng. 2012, 14:261-269.
    • (2012) Metab. Eng. , vol.14 , pp. 261-269
    • Hodgman, C.E.1    Jewett, M.C.2
  • 6
    • 84857440637 scopus 로고    scopus 로고
    • High-yield cell-free protein synthesis for site-specific incorporation of unnatural amino acids at two sites
    • Ozawa K., Loscha K.V., Kuppan K.V., Loh C.T., Dixon N.E., Otting G. High-yield cell-free protein synthesis for site-specific incorporation of unnatural amino acids at two sites. Biochem. Biophys. Res. Commun. 2012, 418:652-656.
    • (2012) Biochem. Biophys. Res. Commun. , vol.418 , pp. 652-656
    • Ozawa, K.1    Loscha, K.V.2    Kuppan, K.V.3    Loh, C.T.4    Dixon, N.E.5    Otting, G.6
  • 7
    • 84867226844 scopus 로고    scopus 로고
    • Cell-free biology: exploiting the interface between synthetic biology and synthetic chemistry
    • Harris D.C., Jewett M.C. Cell-free biology: exploiting the interface between synthetic biology and synthetic chemistry. Curr. Opin. Bitechnol. 2012, 23:672-678.
    • (2012) Curr. Opin. Bitechnol. , vol.23 , pp. 672-678
    • Harris, D.C.1    Jewett, M.C.2
  • 8
    • 84896452607 scopus 로고    scopus 로고
    • Cell-free protein synthesis from a release factor 1 deficient Escherichia coli activates efficient and multiple site-specific non-standard amino acid incorporation
    • Hong S.H., Ntai I., Haimovich A.D., Kelleher N.L., Isaacs F.J., Jewett M.C. Cell-free protein synthesis from a release factor 1 deficient Escherichia coli activates efficient and multiple site-specific non-standard amino acid incorporation. ACS Synth. Biol. 2013, 10.1021/sb 400140t.
    • (2013) ACS Synth. Biol.
    • Hong, S.H.1    Ntai, I.2    Haimovich, A.D.3    Kelleher, N.L.4    Isaacs, F.J.5    Jewett, M.C.6
  • 9
    • 76649104730 scopus 로고    scopus 로고
    • Practical cell-free protein synthesis system using purified wheat embryos
    • Takai K., Sawasaki T., Endo Y. Practical cell-free protein synthesis system using purified wheat embryos. Nat. Protoc. 2010, 5:227-238.
    • (2010) Nat. Protoc. , vol.5 , pp. 227-238
    • Takai, K.1    Sawasaki, T.2    Endo, Y.3
  • 11
    • 0017191401 scopus 로고
    • An efficient mRNA-dependent translation system from reticulocyte lysates
    • Pelham H.R., Jackson R.J. An efficient mRNA-dependent translation system from reticulocyte lysates. Eur. J. Biochem. 1976, 67:247-256.
    • (1976) Eur. J. Biochem. , vol.67 , pp. 247-256
    • Pelham, H.R.1    Jackson, R.J.2
  • 12
    • 84888046697 scopus 로고    scopus 로고
    • Cell-free protein expression based on extracts from CHO cells
    • Brodel A.K., Sonnabend A., Kubick S. Cell-free protein expression based on extracts from CHO cells. Biotechnol. Bioeng. 2014, 111:25-36.
    • (2014) Biotechnol. Bioeng. , vol.111 , pp. 25-36
    • Brodel, A.K.1    Sonnabend, A.2    Kubick, S.3
  • 13
    • 77951951033 scopus 로고    scopus 로고
    • A highly efficient pipeline for protein expression in Leishmania tarentolae using infrared fluorescence protein as marker
    • Dortay H., Mueller-Roeber B. A highly efficient pipeline for protein expression in Leishmania tarentolae using infrared fluorescence protein as marker. Microb. Cell Fact. 2010, 9:29.
    • (2010) Microb. Cell Fact. , vol.9 , pp. 29
    • Dortay, H.1    Mueller-Roeber, B.2
  • 14
    • 84896415554 scopus 로고    scopus 로고
    • Optimized extract preparation methods and reaction conditions for improved yeast cell-free protein synthesis
    • Hodgman C.E., Jewett M.C. Optimized extract preparation methods and reaction conditions for improved yeast cell-free protein synthesis. Biotechnol. Bioeng. 2013, 110:2643-2654.
    • (2013) Biotechnol. Bioeng. , vol.110 , pp. 2643-2654
    • Hodgman, C.E.1    Jewett, M.C.2
  • 15
    • 48449083502 scopus 로고    scopus 로고
    • An optimized yeast cell-free system: sufficient for translation of human papillomavirus 58 L1 mRNA and assembly of virus-like particles
    • Wang X., Liu J., Zheng Y., Li J., Wang H., Zhou Y., Qi M., Yu H., Tang W., Zhao W.M. An optimized yeast cell-free system: sufficient for translation of human papillomavirus 58 L1 mRNA and assembly of virus-like particles. J. Biosci. Bioeng. 2008, 106:8-15.
    • (2008) J. Biosci. Bioeng. , vol.106 , pp. 8-15
    • Wang, X.1    Liu, J.2    Zheng, Y.3    Li, J.4    Wang, H.5    Zhou, Y.6    Qi, M.7    Yu, H.8    Tang, W.9    Zhao, W.M.10
  • 17
    • 77957821041 scopus 로고    scopus 로고
    • Power of yeast for analysis of eukaryotic translation initiation
    • Altmann M., Linder P. Power of yeast for analysis of eukaryotic translation initiation. J. Biol. Chem. 2010, 285:31907-31912.
    • (2010) J. Biol. Chem. , vol.285 , pp. 31907-31912
    • Altmann, M.1    Linder, P.2
  • 18
    • 34547699646 scopus 로고    scopus 로고
    • Energy systems for ATP regeneration in cell-free protein synthesis reactions
    • Calhoun K.A., Swartz J.R. Energy systems for ATP regeneration in cell-free protein synthesis reactions. Methods Mol. Biol. 2007, 375:3-17.
    • (2007) Methods Mol. Biol. , vol.375 , pp. 3-17
    • Calhoun, K.A.1    Swartz, J.R.2
  • 19
    • 0034681011 scopus 로고    scopus 로고
    • Expression-independent consumption of substrates in cell-free expression system from Escherichia coli
    • Kim R.G., Choi C.Y. Expression-independent consumption of substrates in cell-free expression system from Escherichia coli. J. Biotechnol. 2001, 84:27-32.
    • (2001) J. Biotechnol. , vol.84 , pp. 27-32
    • Kim, R.G.1    Choi, C.Y.2
  • 20
    • 84899922092 scopus 로고    scopus 로고
    • Substrate replenishment and byproduct removal improve yeast cell-free protein synthesis
    • Schoborg J.A., Hodgman C.E., Anderson M.J., Jewett M.C. Substrate replenishment and byproduct removal improve yeast cell-free protein synthesis. Biotechnol. J. 2013, 9:630-640.
    • (2013) Biotechnol. J. , vol.9 , pp. 630-640
    • Schoborg, J.A.1    Hodgman, C.E.2    Anderson, M.J.3    Jewett, M.C.4
  • 21
    • 3242691402 scopus 로고    scopus 로고
    • High-density, defined media culture for the production of Escherichia coli cell extracts
    • American Chemical Society, Washington, DC
    • Zawada J., Richter B., Huang E., Lodes E., Shah A., Swartz J.R. High-density, defined media culture for the production of Escherichia coli cell extracts. Fermentation Biotechnology 2003, 142-156. American Chemical Society, Washington, DC.
    • (2003) Fermentation Biotechnology , pp. 142-156
    • Zawada, J.1    Richter, B.2    Huang, E.3    Lodes, E.4    Shah, A.5    Swartz, J.R.6
  • 22
    • 1542720448 scopus 로고    scopus 로고
    • Mimicking the Escherichia coli cytoplasmic environment activates long-lived and efficient cell-free protein synthesis
    • Jewett M.C., Swartz J.R. Mimicking the Escherichia coli cytoplasmic environment activates long-lived and efficient cell-free protein synthesis. Biotechnol. Bioeng. 2004, 86:19-26.
    • (2004) Biotechnol. Bioeng. , vol.86 , pp. 19-26
    • Jewett, M.C.1    Swartz, J.R.2
  • 23
    • 4344670572 scopus 로고    scopus 로고
    • Substrate replenishment extends protein synthesis with an in vitro translation system designed to mimic the cytoplasm
    • Jewett M.C., Swartz J.R. Substrate replenishment extends protein synthesis with an in vitro translation system designed to mimic the cytoplasm. Biotechnol. Bioeng. 2004, 87:465-471.
    • (2004) Biotechnol. Bioeng. , vol.87 , pp. 465-471
    • Jewett, M.C.1    Swartz, J.R.2
  • 24
    • 53949093950 scopus 로고    scopus 로고
    • An integrated cell-free metabolic platform for protein production and synthetic biology
    • Jewett M.C., Calhoun K.A., Voloshin A., Wuu J.J., Swartz J.R. An integrated cell-free metabolic platform for protein production and synthetic biology. Mol. Syst. Biol. 2008, 4:220.
    • (2008) Mol. Syst. Biol. , vol.4 , pp. 220
    • Jewett, M.C.1    Calhoun, K.A.2    Voloshin, A.3    Wuu, J.J.4    Swartz, J.R.5
  • 25
    • 3242686114 scopus 로고    scopus 로고
    • Amino acid stabilization for cell-free protein synthesis by modification of the Escherichia coli genome
    • Michel-Reydellet N., Calhoun K., Swartz J. Amino acid stabilization for cell-free protein synthesis by modification of the Escherichia coli genome. Metab. Eng. 2004, 6:197-203.
    • (2004) Metab. Eng. , vol.6 , pp. 197-203
    • Michel-Reydellet, N.1    Calhoun, K.2    Swartz, J.3
  • 28
    • 73149091660 scopus 로고    scopus 로고
    • Reconstruction of the yeast Snf1 kinase regulatory network reveals its role as a global energy regulator
    • Usaite R., Jewett M.C., Oliveira A.P., Yates J.R., Olsson L., Nielsen J. Reconstruction of the yeast Snf1 kinase regulatory network reveals its role as a global energy regulator. Mol. Syst. Biol. 2009, 5:319.
    • (2009) Mol. Syst. Biol. , vol.5 , pp. 319
    • Usaite, R.1    Jewett, M.C.2    Oliveira, A.P.3    Yates, J.R.4    Olsson, L.5    Nielsen, J.6
  • 31
    • 84870169302 scopus 로고    scopus 로고
    • Driving the cell cycle through metabolism
    • Cai L., Tu B.P. Driving the cell cycle through metabolism. Annu. Rev. Cell Dev. Biol. 2012, 28:59-87.
    • (2012) Annu. Rev. Cell Dev. Biol. , vol.28 , pp. 59-87
    • Cai, L.1    Tu, B.P.2
  • 32
    • 84858183302 scopus 로고    scopus 로고
    • Regulation of amino acid, nucleotide, and phosphate metabolism in Saccharomyces cerevisiae
    • Ljungdahl P.O., Daignan-Fornier B. Regulation of amino acid, nucleotide, and phosphate metabolism in Saccharomyces cerevisiae. Genetics 2012, 190:885-929.
    • (2012) Genetics , vol.190 , pp. 885-929
    • Ljungdahl, P.O.1    Daignan-Fornier, B.2
  • 33
    • 84866076360 scopus 로고    scopus 로고
    • Nutritional control of growth and development in yeast
    • Broach J.R. Nutritional control of growth and development in yeast. Genetics 2012, 192:73-105.
    • (2012) Genetics , vol.192 , pp. 73-105
    • Broach, J.R.1
  • 34
    • 0031810672 scopus 로고    scopus 로고
    • Yeast carbon catabolite repression
    • Gancedo J.M. Yeast carbon catabolite repression. Microbiol. Mol. Biol. Rev. 1998, 62:334-361.
    • (1998) Microbiol. Mol. Biol. Rev. , vol.62 , pp. 334-361
    • Gancedo, J.M.1
  • 35
    • 27744491124 scopus 로고    scopus 로고
    • Characterization of the metabolic shift between oxidative and fermentative growth in Saccharomyces cerevisiae by comparative 13C flux analysis
    • Frick O., Wittmann C. Characterization of the metabolic shift between oxidative and fermentative growth in Saccharomyces cerevisiae by comparative 13C flux analysis. Microb. Cell Fact. 2005, 4:30.
    • (2005) Microb. Cell Fact. , vol.4 , pp. 30
    • Frick, O.1    Wittmann, C.2
  • 37
    • 78649701863 scopus 로고    scopus 로고
    • Transcriptional regulation in yeast during diauxic shift and stationary phase
    • Galdieri L., Mehrotra S., Yu S., Vancura A. Transcriptional regulation in yeast during diauxic shift and stationary phase. OMICS J. Integr. Biol. 2010, 14:629-638.
    • (2010) OMICS J. Integr. Biol. , vol.14 , pp. 629-638
    • Galdieri, L.1    Mehrotra, S.2    Yu, S.3    Vancura, A.4
  • 39
    • 84899749136 scopus 로고    scopus 로고
    • A combined cell-free transcription-translation system from Saccharomyces cerevisiae for rapid and robust protein synthesis
    • Gan R., Jewett M.C. A combined cell-free transcription-translation system from Saccharomyces cerevisiae for rapid and robust protein synthesis. Biotechnol. J. 2014, 9:641-651.
    • (2014) Biotechnol. J. , vol.9 , pp. 641-651
    • Gan, R.1    Jewett, M.C.2
  • 41
    • 0035829827 scopus 로고    scopus 로고
    • Decoupling cell growth and product formation in Chinese hamster ovary cells through metabolic control
    • Altamirano C., Cairo J.J., Godia F. Decoupling cell growth and product formation in Chinese hamster ovary cells through metabolic control. Biotechnol. Bioeng. 2001, 76:351-360.
    • (2001) Biotechnol. Bioeng. , vol.76 , pp. 351-360
    • Altamirano, C.1    Cairo, J.J.2    Godia, F.3
  • 43
    • 0014353859 scopus 로고
    • The energy charge of the adenylate pool as a regulatory parameter. Interaction with feedback modifiers
    • Atkinson D.E. The energy charge of the adenylate pool as a regulatory parameter. Interaction with feedback modifiers. Biochemistry 1968, 7:4030-4034.
    • (1968) Biochemistry , vol.7 , pp. 4030-4034
    • Atkinson, D.E.1
  • 44
    • 0032508638 scopus 로고    scopus 로고
    • Glucose repression in Saccharomyces cerevisiae is related to the glucose concentration rather than the glucose flux
    • Meijer M.M., Boonstra J., Verkleij A.J., Verrips C.T. Glucose repression in Saccharomyces cerevisiae is related to the glucose concentration rather than the glucose flux. J. Biol. Chem. 1998, 273:24102-24107.
    • (1998) J. Biol. Chem. , vol.273 , pp. 24102-24107
    • Meijer, M.M.1    Boonstra, J.2    Verkleij, A.J.3    Verrips, C.T.4
  • 45
    • 0036275447 scopus 로고    scopus 로고
    • Getting started with yeast
    • Sherman F. Getting started with yeast. Methods Enzymol. 2002, 350:3-41.
    • (2002) Methods Enzymol. , vol.350 , pp. 3-41
    • Sherman, F.1
  • 47
  • 48
    • 0022989417 scopus 로고
    • Regulation of carbon metabolism in Saccharomyces cerevisiae and related yeasts
    • Kappeli O. Regulation of carbon metabolism in Saccharomyces cerevisiae and related yeasts. Adv. Microb. Physiol. 1986, 28:181-209.
    • (1986) Adv. Microb. Physiol. , vol.28 , pp. 181-209
    • Kappeli, O.1
  • 49
    • 0027449299 scopus 로고
    • Glutamine synthesis is a regulatory signal controlling glucose catabolism in Saccharomyces cerevisiae
    • Flores-Samaniego B., Olivera H., Gonzalez A. Glutamine synthesis is a regulatory signal controlling glucose catabolism in Saccharomyces cerevisiae. J. Bacteriol. 1993, 175:7705-7706.
    • (1993) J. Bacteriol. , vol.175 , pp. 7705-7706
    • Flores-Samaniego, B.1    Olivera, H.2    Gonzalez, A.3
  • 50
    • 0034100041 scopus 로고    scopus 로고
    • Glucose depletion rapidly inhibits translation initiation in yeast
    • Ashe M.P., De Long S.K., Sachs A.B. Glucose depletion rapidly inhibits translation initiation in yeast. Mol. Biol. Cell 2000, 11:833-848.
    • (2000) Mol. Biol. Cell , vol.11 , pp. 833-848
    • Ashe, M.P.1    De Long, S.K.2    Sachs, A.B.3
  • 51
    • 27144510561 scopus 로고    scopus 로고
    • Translational regulation of GCN4 and the general amino acid control of yeast
    • Hinnebusch A.G. Translational regulation of GCN4 and the general amino acid control of yeast. Annu. Rev. Microbiol. 2005, 59:407-450.
    • (2005) Annu. Rev. Microbiol. , vol.59 , pp. 407-450
    • Hinnebusch, A.G.1
  • 52
    • 14244268869 scopus 로고    scopus 로고
    • Maintaining rapid growth in moderate-density Escherichia coli fermentations
    • Zawada J., Swartz J. Maintaining rapid growth in moderate-density Escherichia coli fermentations. Biotechnol. Bioeng. 2005, 89:407-415.
    • (2005) Biotechnol. Bioeng. , vol.89 , pp. 407-415
    • Zawada, J.1    Swartz, J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.