-
1
-
-
17444424295
-
Serial SimCoal: A population genetics model for data from multiple populations and points in time
-
Anderson CNK, Ramakrishnan U, Chan YL, Hadly EA. 2005. Serial SimCoal: a population genetics model for data from multiple populations and points in time. Bioinformatics 21:1733-1734.
-
(2005)
Bioinformatics
, vol.21
, pp. 1733-1734
-
-
Anderson, C.N.K.1
Ramakrishnan, U.2
Chan, Y.L.3
Hadly, E.A.4
-
2
-
-
0033800842
-
Population genetic structure of Australian magpies: Evidence for regional differences in juvenile dispersal behaviour
-
Baker A, Mather P, Hughes J. 2000. Population genetic structure of Australian magpies: evidence for regional differences in juvenile dispersal behaviour. Heredity 85:167-176.
-
(2000)
Heredity
, vol.85
, pp. 167-176
-
-
Baker, A.1
Mather, P.2
Hughes, J.3
-
3
-
-
77956944519
-
Two pulses of diversification across the Isthmus of Tehuantepec in a montane Mexican bird fauna
-
Barber BR, Klicka J. 2010. Two pulses of diversification across the Isthmus of Tehuantepec in a montane Mexican bird fauna. Proc Biol Sci. 277: 2675-2681.
-
(2010)
Proc Biol Sci.
, vol.277
, pp. 2675-2681
-
-
Barber, B.R.1
Klicka, J.2
-
4
-
-
6044243344
-
Assessing the causes of late Pleistocene extinctions on the continents
-
Barnosky A, Koch P, Feranec R. 2004. Assessing the causes of late Pleistocene extinctions on the continents. Science 306:70-75.
-
(2004)
Science
, vol.306
, pp. 70-75
-
-
Barnosky, A.1
Koch, P.2
Feranec, R.3
-
5
-
-
77955508453
-
Likelihood-free inference of population structure and local adaptation in a Bayesian hierarchical model
-
Bazin E, Dawson KJ, Beaumont MA. 2010. Likelihood-free inference of population structure and local adaptation in a Bayesian hierarchical model. Genetics 185:587-602.
-
(2010)
Genetics
, vol.185
, pp. 587-602
-
-
Bazin, E.1
Dawson, K.J.2
Beaumont, M.A.3
-
6
-
-
33646253454
-
Population size does not influence mitochondrial genetic diversity in animal
-
Bazin E, Glemin S, Galtier N. 2006. Population size does not influence mitochondrial genetic diversity in animal. Science 312:570-572.
-
(2006)
Science
, vol.312
, pp. 570-572
-
-
Bazin, E.1
Glemin, S.2
Galtier, N.3
-
7
-
-
78149388939
-
Approximate Bayesian computation in evolution and ecology
-
Beaumont M. 2010. Approximate Bayesian computation in evolution and ecology. Annu Rev Ecol Evol Syst. 41:379-406.
-
(2010)
Annu Rev Ecol Evol Syst.
, vol.41
, pp. 379-406
-
-
Beaumont, M.1
-
8
-
-
1842532350
-
The Bayesian revolution in genetics
-
Beaumont MA, Rannala B. 2004. The Bayesian revolution in genetics. Nat Rev Genet. 5:251-261.
-
(2004)
Nat Rev Genet.
, vol.5
, pp. 251-261
-
-
Beaumont, M.A.1
Rannala, B.2
-
9
-
-
77954247262
-
ABC as a flexible framework to estimate demography over space and time: Some cons, many pros
-
Bertorelle G, Benazzo A, Mona S. 2010. ABC as a flexible framework to estimate demography over space and time: some cons, many pros. Mol Ecol. 19:2609-2625.
-
(2010)
Mol Ecol.
, vol.19
, pp. 2609-2625
-
-
Bertorelle, G.1
Benazzo, A.2
Mona, S.3
-
10
-
-
59849093347
-
Stability predicts genetic diversity in the Brazilian Atlantic forest hotspot
-
Carnaval A, Hickerson M, Haddad CFB, Rodrigues MT, Moritz C. 2009. Stability predicts genetic diversity in the Brazilian Atlantic forest hotspot. Science 323:785-789.
-
(2009)
Science
, vol.323
, pp. 785-789
-
-
Carnaval, A.1
Hickerson, M.2
Haddad, C.F.B.3
Rodrigues, M.T.4
Moritz, C.5
-
11
-
-
0031741723
-
The effect of Quaternary climatic changes on plant distribution and evolution
-
Comes HP, Kadereit JW. 1998. The effect of Quaternary climatic changes on plant distribution and evolution. Trends Plant Sci. 3:432-438.
-
(1998)
Trends Plant Sci.
, vol.3
, pp. 432-438
-
-
Comes, H.P.1
Kadereit, J.W.2
-
12
-
-
33749668496
-
Validation of software for Bayesian models using posterior quantiles
-
Cook SR, Gelman A, Rubin DB. 2006. Validation of software for Bayesian models using posterior quantiles. J Comput Graph Stat. 15:675-692.
-
(2006)
J Comput Graph Stat.
, vol.15
, pp. 675-692
-
-
Cook, S.R.1
Gelman, A.2
Rubin, D.B.3
-
13
-
-
77955493069
-
Inference on population history and model checking using DNA sequence and micro-satellite data with the software DIYABC(v1.0)
-
Cornuet J-M, Ravigné V, Estoup A. 2010. Inference on population history and model checking using DNA sequence and micro-satellite data with the software DIYABC(v1.0). BMC Bioinformatics 11:401.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 401
-
-
Cornuet, J.-M.1
Ravigné, V.2
Estoup, A.3
-
15
-
-
84861153207
-
Abc: An R package for approximate Bayesian computation (ABC)
-
Csilléry K, François O, Blum M. 2012. abc: an R package for approximate Bayesian computation (ABC). Methods Ecol Evol. 3:475-479.
-
(2012)
Methods Ecol Evol.
, vol.3
, pp. 475-479
-
-
Csilléry, K.1
François, O.2
Blum, M.3
-
16
-
-
0037441703
-
Rapid sea-level fall and deep-ocean temperature change since the last interglacial period
-
Cutler KB, Edwards RL, Taylor FW, Cheng H, Adkins J, Gallup CD, Cutler PM, Burr GS, Bloom AL. 2003. Rapid sea-level fall and deep-ocean temperature change since the last interglacial period. Earth Planet Sci Lett. 206:253-271.
-
(2003)
Earth Planet Sci Lett.
, vol.206
, pp. 253-271
-
-
Cutler, K.B.1
Edwards, R.L.2
Taylor, F.W.3
Cheng, H.4
Adkins, J.5
Gallup, C.D.6
Cutler, P.M.7
Burr, G.S.8
Bloom, A.L.9
-
17
-
-
0035957694
-
Range shifts and adaptive responses to Quaternary climate change
-
Davis MB, Shaw RG. 2001. Range shifts and adaptive responses to Quaternary climate change. Science 292:673-679.
-
(2001)
Science
, vol.292
, pp. 673-679
-
-
Davis, M.B.1
Shaw, R.G.2
-
18
-
-
84859855727
-
A species assemblage approach to comparative phylogeography of birds in southern Australia
-
Dolman G, Joseph L. 2012. A species assemblage approach to comparative phylogeography of birds in southern Australia. Ecol Evol. 2: 354-369.
-
(2012)
Ecol Evol.
, vol.2
, pp. 354-369
-
-
Dolman, G.1
Joseph, L.2
-
19
-
-
67650979386
-
Systematic and conservation implications of mitochondrial DNA diversity in emu-wrens, Stipiturus (Aves: Maluridae)
-
Donnellan SCA, Armstrong JA, PickettMC, Milne TC, Baulderstone JC. 2009. Systematic and conservation implications of mitochondrial DNA diversity in emu-wrens, Stipiturus (Aves: Maluridae). Emu 109:143-152.
-
(2009)
Emu
, vol.109
, pp. 143-152
-
-
Donnellan, S.C.A.1
Armstrong, J.A.2
Pickettmc Milne, T.C.3
Baulderstone, J.C.4
-
20
-
-
84868091618
-
Comparative phylogeography in Fijian coral reef fishes: A multi-taxa approach towards marine reserve design
-
Drew JA, Barber PH. 2012. Comparative phylogeography in Fijian coral reef fishes: a multi-taxa approach towards marine reserve design. PLoS One 7:e47710.
-
(2012)
PLoS One
, vol.7
-
-
Drew, J.A.1
Barber, P.H.2
-
21
-
-
0034255125
-
Evolutionary consequences of changes in species' geographical distributions driven by Milankovitch climate oscillations
-
Dynesius M, Jansson R. 2000. Evolutionary consequences of changes in species' geographical distributions driven by Milankovitch climate oscillations. Proc Natl Acad Sci U S A. 97:9115-9120.
-
(2000)
Proc Natl Acad Sci U S A.
, vol.97
, pp. 9115-9120
-
-
Dynesius, M.1
Jansson, R.2
-
22
-
-
0000518216
-
Mitochondrial gene genealogy and gene flow among island and mainland populations of a sedentary songbird, the grey-crowned babbler (Pomatostomus temporalis)
-
Edwards S. 1993. Mitochondrial gene genealogy and gene flow among island and mainland populations of a sedentary songbird, the grey-crowned babbler (Pomatostomus temporalis). Evolution 47:1118-1137.
-
(1993)
Evolution
, vol.47
, pp. 1118-1137
-
-
Edwards, S.1
-
23
-
-
53649083413
-
Phylogenetic analysis of community assembly and structure over space and time
-
Emerson B, Gillespie R. 2008. Phylogenetic analysis of community assembly and structure over space and time. Trends Ecol Evol. 23: 619-630.
-
(2008)
Trends Ecol Evol.
, vol.23
, pp. 619-630
-
-
Emerson, B.1
Gillespie, R.2
-
24
-
-
79960535651
-
Phylogeny, phylogeography, phylobetadiversity and the molecular analysis of biological communities
-
Emerson BC, Cicconardi F, Fanciulli PP, Shaw PJA. 2011. Phylogeny, phylogeography, phylobetadiversity and the molecular analysis of biological communities. Philos Trans R Soc B Biol Sci. 366:2391-2402.
-
(2011)
Philos Trans R Soc B Biol Sci.
, vol.366
, pp. 2391-2402
-
-
Emerson, B.C.1
Cicconardi, F.2
Fanciulli, P.P.3
Shaw, P.J.A.4
-
25
-
-
1642388330
-
Patterns of DNA sequence diversity and genetic structure after a range expansion: Lessons from the infinite-island model
-
Excoffier L. 2004. Patterns of DNA sequence diversity and genetic structure after a range expansion: lessons from the infinite-island model. Mol Ecol. 13:853-864.
-
(2004)
Mol Ecol.
, vol.13
, pp. 853-864
-
-
Excoffier, L.1
-
27
-
-
0035678847
-
Is the population size of a species relevant to its evolution
-
Gillespie JH. 2001. Is the population size of a species relevant to its evolution. Evolution 55:2161-2169.
-
(2001)
Evolution
, vol.55
, pp. 2161-2169
-
-
Gillespie, J.H.1
-
28
-
-
0029661292
-
Spatial response of mammals to late Quaternary environmental fluctuations
-
Graham RW, Lundelius EL Jr, Graham MA, Schroeder EK, Toomey RS III, Anderson E, Barnosky D, Burns JA, Churcher CS, Grayson DK, et al. 1996. Spatial response of mammals to late Quaternary environmental fluctuations. Science 272:1601-1606.
-
(1996)
Science
, vol.272
, pp. 1601-1606
-
-
Graham, R.W.1
Lundelius Jr., E.L.2
Graham, M.A.3
Schroeder, E.K.4
Toomey, R.S.I.I.I.5
Anderson, E.6
Barnosky, D.7
Burns, J.A.8
Churcher, C.S.9
Grayson, D.K.10
-
29
-
-
0031690476
-
Shallow population histories in deep evolutionary lineages of marine fishes: Insights from sardines and anchovies and lessons for conservation
-
Grant WS, Bowen BW. 1998. Shallow population histories in deep evolutionary lineages of marine fishes: insights from sardines and anchovies and lessons for conservation. J Hered. 89:415-426.
-
(1998)
J Hered.
, vol.89
, pp. 415-426
-
-
Grant, W.S.1
Bowen, B.W.2
-
30
-
-
78049361626
-
East-west genetic differentiation in Musk Ducks (Biziura lobata) of Australia suggests late Pleistocene divergence at the Nullarbor Plain
-
Guay P-J, Chesser RT, Mulder RA, Afton AD, Paton DC, McCracken KG. 2010. East-west genetic differentiation in Musk Ducks (Biziura lobata) of Australia suggests late Pleistocene divergence at the Nullarbor Plain. Conserv Genet. 11:2105-2120.
-
(2010)
Conserv Genet.
, vol.11
, pp. 2105-2120
-
-
Guay, P.-J.1
Chesser, R.T.2
Mulder, R.A.3
Afton, A.D.4
Paton, D.C.5
McCracken, K.G.6
-
31
-
-
84877134593
-
The confounding effect of population structure on bayesian skyline plot inferences of demographic history
-
Heller R, Chikhi L, Siegismund H. 2013. The confounding effect of population structure on bayesian skyline plot inferences of demographic history. PLoS One 8:e62992.
-
(2013)
PLoS One
, vol.8
-
-
Heller, R.1
Chikhi, L.2
Siegismund, H.3
-
32
-
-
0034702196
-
The genetic legacy of the Quaternary ice ages
-
Hewitt G. 2000. The genetic legacy of the Quaternary ice ages. Nature 405:907-913.
-
(2000)
Nature
, vol.405
, pp. 907-913
-
-
Hewitt, G.1
-
33
-
-
1242299019
-
Genetic consequences of climatic oscillations in the Quaternary
-
Hewitt GM. 2004. Genetic consequences of climatic oscillations in the Quaternary. Philos Trans R Soc Lond B Biol Sci. 359:183.
-
(2004)
Philos Trans R Soc Lond B Biol Sci.
, vol.359
, pp. 183
-
-
Hewitt, G.M.1
-
34
-
-
70749117928
-
Phylogeography's past, present, and future: 10 years after
-
Hickerson MJ, Carstens BC, Cavender-Bares J, Crandall KA, Graham CH, Johnson JB, Rissler L, Victoriano PF, Yoder AD. 2010. Phylogeography's past, present, and future: 10 years after. Mol Phylogenet Evol. 54:291-301.
-
(2010)
Mol Phylogenet Evol.
, vol.54
, pp. 291-301
-
-
Hickerson, M.J.1
Carstens, B.C.2
Cavender-Bares, J.3
Crandall, K.A.4
Graham, C.H.5
Johnson, J.B.6
Rissler, L.7
Victoriano, P.F.8
Yoder, A.D.9
-
35
-
-
58149314233
-
Testing comparative phylogeographic models of marine vicariance and dispersal using a hierarchical Bayesian approach
-
Hickerson MJ, Meyer C. 2008. Testing comparative phylogeographic models of marine vicariance and dispersal using a hierarchical Bayesian approach. BMC Evol Biol. 8:322.
-
(2008)
BMC Evol Biol.
, vol.8
, pp. 322
-
-
Hickerson, M.J.1
Meyer, C.2
-
36
-
-
33846875227
-
Test for simultaneous divergence using approximate Bayesian computation
-
Hickerson MJ, Stahl EA, Lessios HA. 2006. Test for simultaneous divergence using approximate Bayesian computation. Evolution 60: 2435-2453.
-
(2006)
Evolution
, vol.60
, pp. 2435-2453
-
-
Hickerson, M.J.1
Stahl, E.A.2
Lessios, H.A.3
-
37
-
-
84890887584
-
Recommendations for using msBayes to incorporate uncertainty in selecting an abc model prior: A response to Oaks et al
-
Hickerson MJ, Stone GN, Lohse K, Demos TC, Xie X, Landerer C, Takebayashi N. 2014. Recommendations for using msBayes to incorporate uncertainty in selecting an abc model prior: a response to Oaks et al. Evolution 68:284-294.
-
(2014)
Evolution
, vol.68
, pp. 284-294
-
-
Hickerson, M.J.1
Stone, G.N.2
Lohse, K.3
Demos, T.C.4
Xie, X.5
Landerer, C.6
Takebayashi, N.7
-
38
-
-
78650306888
-
Climate change and evolutionary adaptations at species' range margins
-
Hill JK, Griffiths HM, Thomas CD. 2011. Climate change and evolutionary adaptations at species' range margins. Annu Rev Entomol. 56: 143-159.
-
(2011)
Annu Rev Entomol.
, vol.56
, pp. 143-159
-
-
Hill, J.K.1
Griffiths, H.M.2
Thomas, C.D.3
-
39
-
-
84872550978
-
Rethinking community assembly through the lens of coexistence theory
-
HilleRisLambers J, Adler PB, HarpoleWS, Levine JM, Mayfield MM. 2012. Rethinking community assembly through the lens of coexistence theory. Annu Rev Ecol Evol Syst. 43:227-248.
-
(2012)
Annu Rev Ecol Evol Syst.
, vol.43
, pp. 227-248
-
-
Hillerislambers, J.1
Adler, P.B.2
Harpole, W.S.3
Levine, J.M.4
Mayfield, M.M.5
-
40
-
-
78650725611
-
MTML-msBayes: Approximate Bayesian comparative phylogeographic inference from multiple taxa and multiple loci with rate heterogeneity
-
Huang W, Takebayashi N, Qi Y, Hickerson MJ. 2011. MTML-msBayes: approximate Bayesian comparative phylogeographic inference from multiple taxa and multiple loci with rate heterogeneity. BMC Bioinformatics 12:1.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 1
-
-
Huang, W.1
Takebayashi, N.2
Qi, Y.3
Hickerson, M.J.4
-
42
-
-
79954569160
-
Skyline-plot methods for estimating demographic history from nucleotide sequences
-
Ho SYW, Shapiro B. 2011. Skyline-plot methods for estimating demographic history from nucleotide sequences. Mol Ecol Resour. 11: 423-434.
-
(2011)
Mol Ecol Resour.
, vol.11
, pp. 423-434
-
-
Ho, S.Y.W.1
Shapiro, B.2
-
43
-
-
78649302845
-
Colonization and/or mitochondrial selective sweeps across the North Atlantic intertidal assemblage revealed by multi-taxa approximate Bayesian computation
-
Ilves KL, Huang W, Wares JP, Hickerson MJ. 2010. Colonization and/or mitochondrial selective sweeps across the North Atlantic intertidal assemblage revealed by multi-taxa approximate Bayesian computation. Mol Ecol. 19:4505-4519.
-
(2010)
Mol Ecol.
, vol.19
, pp. 4505-4519
-
-
Ilves, K.L.1
Huang, W.2
Wares, J.P.3
Hickerson, M.J.4
-
45
-
-
67749093560
-
A tangled tale of two teal: Population history of the grey Anas gracilis and chestnut teal A. Castanea of Australia
-
Joseph L, Adcock GJ, Linde C, Omland KE, Heinsohn R, Terry Chesser R, Roshier D. 2009. A tangled tale of two teal: population history of the grey Anas gracilis and chestnut teal A. castanea of Australia. J Avian Biol. 40:430-439.
-
(2009)
J Avian Biol.
, vol.40
, pp. 430-439
-
-
Joseph, L.1
Adcock, G.J.2
Linde, C.3
Omland, K.E.4
Heinsohn, R.5
Terry Chesser, R.6
Roshier, D.7
-
46
-
-
52749090706
-
Where and when does a ring start and end? Testing the ringspecies hypothesis in a species complex of Australian parrots
-
Joseph L, Dolman G, Donnellan S, Saint KM, Berg ML, Bennett ATD. 2008. Where and when does a ring start and end? Testing the ringspecies hypothesis in a species complex of Australian parrots. Proc Biol Sci. 275:2431-2440.
-
(2008)
Proc Biol Sci.
, vol.275
, pp. 2431-2440
-
-
Joseph, L.1
Dolman, G.2
Donnellan, S.3
Saint, K.M.4
Berg, M.L.5
Bennett, A.T.D.6
-
47
-
-
33644870643
-
Molecular resolution of population history, systematics and historical biogeography of the Australian ringneck parrots Barnardius: Are we there yet?
-
Joseph L, Wilke T. 2006. Molecular resolution of population history, systematics and historical biogeography of the Australian ringneck parrots Barnardius: are we there yet? Emu 106:49.
-
(2006)
Emu
, vol.106
, pp. 49
-
-
Joseph, L.1
Wilke, T.2
-
48
-
-
0036010844
-
Reconciling genetic expectations from host specificity with historical population dynamics in an avian brood parasite, Horsfield's Bronze-Cuckoo Chalcites basalis of Australia
-
Joseph L, Wilke T, Alpers D. 2002. Reconciling genetic expectations from host specificity with historical population dynamics in an avian brood parasite, Horsfield's Bronze-Cuckoo Chalcites basalis of Australia. Mol Ecol. 11:829-837.
-
(2002)
Mol Ecol.
, vol.11
, pp. 829-837
-
-
Joseph, L.1
Wilke, T.2
Alpers, D.3
-
49
-
-
79957858338
-
Phylogeography and taxonomy of the Little Bronze-Cuckoo (Chalcites minutillus) in Australia
-
Joseph L, Zeriga T, Adcock G, Langmore N. 2011. Phylogeography and taxonomy of the Little Bronze-Cuckoo (Chalcites minutillus) in Australia. Emu 111:113-119.
-
(2011)
Emu
, vol.111
, pp. 113-119
-
-
Joseph, L.1
Zeriga, T.2
Adcock, G.3
Langmore, N.4
-
51
-
-
78649582958
-
The impact of Pleistocene changes of climate and landscape on Australian birds: A test using the Pied Butcherbird (Cracticus nigrogularis)
-
Kearns AM, Joseph L, Cook LG. 2010. The impact of Pleistocene changes of climate and landscape on Australian birds: a test using the Pied Butcherbird (Cracticus nigrogularis). Emu 110:285.
-
(2010)
Emu
, vol.110
, pp. 285
-
-
Kearns, A.M.1
Joseph, L.2
Cook, L.G.3
-
52
-
-
58249100052
-
Inferring the phylogeography and evolutionary history of the splendid fairywren Malurus splendens from mitochondrial DNA and spectrophotometry
-
Kearns AM, Joseph L, Edwards SV, Double MC. 2009. Inferring the phylogeography and evolutionary history of the splendid fairywren Malurus splendens from mitochondrial DNA and spectrophotometry. J Avian Biol. 40:7-17.
-
(2009)
J Avian Biol.
, vol.40
, pp. 7-17
-
-
Kearns, A.M.1
Joseph, L.2
Edwards, S.V.3
Double, M.C.4
-
53
-
-
81855207249
-
Testing the effect of transient Plio-Pleistocene barriers in monsoonal Australo-Papua: Did mangrove habitats maintain genetic connectivity in the Black Butcherbird?
-
Kearns AM, Joseph L, Omland KE, Cook LG. 2011. Testing the effect of transient Plio-Pleistocene barriers in monsoonal Australo-Papua: did mangrove habitats maintain genetic connectivity in the Black Butcherbird? Mol Ecol. 20:5042-5059.
-
(2011)
Mol Ecol.
, vol.20
, pp. 5042-5059
-
-
Kearns, A.M.1
Joseph, L.2
Omland, K.E.3
Cook, L.G.4
-
54
-
-
70450281762
-
Statistical phylogeography
-
Knowles LL. 2009. Statistical phylogeography.Annu Rev Ecol Evol Syst. 40: 593-612.
-
(2009)
Annu Rev Ecol Evol Syst.
, vol.40
, pp. 593-612
-
-
Knowles, L.L.1
-
55
-
-
0031835126
-
Maximum likelihood estimation of population growth rates based on the coalescent
-
Kuhner MK, Yamato J, Felsenstein J. 1998. Maximum likelihood estimation of population growth rates based on the coalescent. Genetics 149:429-434.
-
(1998)
Genetics
, vol.149
, pp. 429-434
-
-
Kuhner, M.K.1
Yamato, J.2
Felsenstein, J.3
-
56
-
-
78149404626
-
Biodiversity and climate change: Integrating evolutionary and ecological responses of species and communities
-
Lavergne S, Mouquet N, Thuiller W, Ronce O. 2010. Biodiversity and climate change: integrating evolutionary and ecological responses of species and communities. Annu Rev Ecol Evol Syst. 41: 321-350.
-
(2010)
Annu Rev Ecol Evol Syst.
, vol.41
, pp. 321-350
-
-
Lavergne, S.1
Mouquet, N.2
Thuiller, W.3
Ronce, O.4
-
57
-
-
57249086459
-
Divergence across Australia's Carpentarian barrier: Statistical phylogeography of the red-backed fairy wren (Malurus melanocephalus)
-
Lee JY, Edwards SV. 2008. Divergence across Australia's Carpentarian barrier: statistical phylogeography of the red-backed fairy wren (Malurus melanocephalus). Evolution 62:3117-3134.
-
(2008)
Evolution
, vol.62
, pp. 3117-3134
-
-
Lee, J.Y.1
Edwards, S.V.2
-
58
-
-
81555200041
-
Species-specific responses of late Quaternary megafauna to climate and humans
-
Lorenzen ED, Nogués-Bravo D, Orlando L, Weinstock J, Binladen J, Marske KA, Ugan A, Borregaard MK, Gilbert MTP, Nielsen R, et al. 2011. Species-specific responses of late Quaternary megafauna to climate and humans. Nature 479:359-364.
-
(2011)
Nature
, vol.479
, pp. 359-364
-
-
Lorenzen, E.D.1
Nogués-Bravo, D.2
Orlando, L.3
Weinstock, J.4
Binladen, J.5
Marske, K.A.6
Ugan, A.7
Borregaard, M.K.8
Gilbert, M.T.P.9
Nielsen, R.10
-
59
-
-
84908574158
-
Relevant statistics for Bayesian model choice
-
Advance Access published December 9, 2013, doi: 10.1111/rssb.12056
-
Marin J-M, Pillai N, Robert CP, Rousseau J. 2013. Relevant statistics for Bayesian model choice. J Royal Stat Soc Series B. Advance Access published December 9, 2013, doi: 10.1111/rssb.12056.
-
(2013)
J Royal Stat Soc Series B
-
-
Marin, J.-M.1
Pillai, N.2
Robert, C.P.3
Rousseau, J.4
-
60
-
-
84859823035
-
Speciation in chestnut-shouldered fairy-wrens (Malurus spp.) and rapid phenotypic divergence in variegated fairy-wrens (Malurus lamberti): A multilocus approach
-
McLean AJ, Toon A, Schmidt DJ, Joseph L, Hughes JM. 2012. Speciation in chestnut-shouldered fairy-wrens (Malurus spp.) and rapid phenotypic divergence in variegated fairy-wrens (Malurus lamberti): a multilocus approach. Mol Phylogenet Evol. 63:668-678.
-
(2012)
Mol Phylogenet Evol.
, vol.63
, pp. 668-678
-
-
McLean, A.J.1
Toon, A.2
Schmidt, D.J.3
Joseph, L.4
Hughes, J.M.5
-
61
-
-
53749104933
-
Phylogeography of post- Pleistocene population expansion in a fungus-gardening ant and its microbial mutualists
-
Mikheyev AS, Vo T, Mueller UG. 2008. Phylogeography of post- Pleistocene population expansion in a fungus-gardening ant and its microbial mutualists. Mol Ecol. 17:4480-4488.
-
(2008)
Mol Ecol.
, vol.17
, pp. 4480-4488
-
-
Mikheyev, A.S.1
Vo, T.2
Mueller, U.G.3
-
62
-
-
80054825281
-
Comparative phylogeography reveals a shared impact of pleistocene environmental change in shaping genetic diversity within nine Anopheles mosquito species across the Indo-Burma biodiversity hotspot
-
Morgan K, O'Loughlin SM, Chen B, Linton Y-M, Thongwat D, Somboon P, Fong MY, Butlin R, Verity R, Prakash A, et al. 2011. Comparative phylogeography reveals a shared impact of pleistocene environmental change in shaping genetic diversity within nine Anopheles mosquito species across the Indo-Burma biodiversity hotspot. Mol Ecol. 20:4533-4549.
-
(2011)
Mol Ecol.
, vol.20
, pp. 4533-4549
-
-
Morgan, K.1
O'Loughlin, S.M.2
Chen, B.3
Linton, Y.-M.4
Thongwat, D.5
Somboon, P.6
Fong, M.Y.7
Butlin, R.8
Verity, R.9
Prakash, A.10
-
63
-
-
79952699738
-
A cryptic and critically endangered species revealed by mitochondrial DNA analyses: The Western Ground Parrot
-
Murphy SA, Joseph L, Burbidge AH, Austin J. 2010. A cryptic and critically endangered species revealed by mitochondrial DNA analyses: the Western Ground Parrot. Conserv Genet. 12:595-600.
-
(2010)
Conserv Genet.
, vol.12
, pp. 595-600
-
-
Murphy, S.A.1
Joseph, L.2
Burbidge, A.H.3
Austin, J.4
-
64
-
-
38349192060
-
Strong variations of mitochondrial mutation rate across mammals-The longevity hypothesis
-
Nabholz B, Glémin S, Galtier N. 2008. Strong variations of mitochondrial mutation rate across mammals-the longevity hypothesis. Mol Biol Evol. 25:120-130.
-
(2008)
Mol Biol Evol.
, vol.25
, pp. 120-130
-
-
Nabholz, B.1
Glémin, S.2
Galtier, N.3
-
65
-
-
70350045010
-
Elevated substitution rate estimates from ancient DNA: Model violation and bias of Bayesian methods
-
Navascués M, Emerson BC. 2009. Elevated substitution rate estimates from ancient DNA: model violation and bias of Bayesian methods. Mol Ecol. 18:4390-4397.
-
(2009)
Mol Ecol.
, vol.18
, pp. 4390-4397
-
-
Navascués, M.1
Emerson, B.C.2
-
66
-
-
17644391776
-
Phylogeography of an east Australian wetforest bird, the satin bowerbird (Ptilonorhynchus violaceus), derived from mtDNA, and its relationship to morphology
-
Nicholls JA, Austin JJ. 2005. Phylogeography of an east Australian wetforest bird, the satin bowerbird (Ptilonorhynchus violaceus), derived from mtDNA, and its relationship to morphology. Mol Ecol. 14:1485-1496.
-
(2005)
Mol Ecol.
, vol.14
, pp. 1485-1496
-
-
Nicholls, J.A.1
Austin, J.J.2
-
67
-
-
0043023774
-
340, 000-year centennialscale marine record of Southern Hemisphere climatic oscillation
-
Pahnke K, Zahn R, Elderfield H, Schulz M. 2003. 340, 000-year centennialscale marine record of Southern Hemisphere climatic oscillation. Science 301:948-952.
-
(2003)
Science
, vol.301
, pp. 948-952
-
-
Pahnke, K.1
Zahn, R.2
Elderfield, H.3
Schulz, M.4
-
68
-
-
84888834488
-
Perched at the mito-nuclear crossroads: Divergent mitochondrial lineages correlate with environment in the face of ongoing nuclear gene flow in an Australian bird
-
Pavlova A, Amos JN, Joseph L, Loynes K, Austin JJ, Keogh JS, Stone GN, Nicholls JA, Sunnucks P. 2013. Perched at the mito-nuclear crossroads: divergent mitochondrial lineages correlate with environment in the face of ongoing nuclear gene flow in an Australian bird. Evolution 67:3412-3428.
-
(2013)
Evolution
, vol.67
, pp. 3412-3428
-
-
Pavlova, A.1
Amos, J.N.2
Joseph, L.3
Loynes, K.4
Austin, J.J.5
Keogh, J.S.6
Stone, G.N.7
Nicholls, J.A.8
Sunnucks, P.9
-
70
-
-
84864023000
-
The effect of historical legacy on adaptation: Do closely related species respond to the environment in the same way?
-
Prunier R, Holsinger KE, Carlson JE. 2012. The effect of historical legacy on adaptation: do closely related species respond to the environment in the same way? J Evol Biol. 25:1636-1649.
-
(2012)
J Evol Biol.
, vol.25
, pp. 1636-1649
-
-
Prunier, R.1
Holsinger, K.E.2
Carlson, J.E.3
-
71
-
-
84863304598
-
-
R Development Core Team.. Vienna (Austria): R Foundation for Statistical Computing.
-
R Development Core Team. 2008. R: a language and environment for statistical computing. Vienna (Austria): R Foundation for Statistical Computing.
-
(2008)
R: A Language and Environment for Statistical Computing
-
-
-
72
-
-
62849103887
-
Using phylochronology to reveal cryptic population histories: Review and synthesis of 29 ancient DNA studies
-
Ramakrishnan U, Hadly EA. 2009. Using phylochronology to reveal cryptic population histories: review and synthesis of 29 ancient DNA studies. Mol Ecol. 18:1310-1330.
-
(2009)
Mol Ecol.
, vol.18
, pp. 1310-1330
-
-
Ramakrishnan, U.1
Hadly, E.A.2
-
73
-
-
34248149943
-
BOLD: The barcode of life data system
-
Ratnasingham S, Hebert P. 2007. BOLD: the Barcode of Life Data System (www.barcodinglife.org). Mol Ecol Notes. 7:355-364.
-
(2007)
Mol Ecol Notes.
, vol.7
, pp. 355-364
-
-
Ratnasingham, S.1
Hebert, P.2
-
74
-
-
0037227366
-
Intra-deme molecular diversity in spatially expanding populations
-
Ray N, Currat M, Excoffier L. 2003. Intra-deme molecular diversity in spatially expanding populations. Mol Biol Evol. 20:76-86.
-
(2003)
Mol Biol Evol.
, vol.20
, pp. 76-86
-
-
Ray, N.1
Currat, M.2
Excoffier, L.3
-
76
-
-
0026548159
-
Population growth makes waves in the distribution of pairwise genetic differences
-
Rogers AR, Harpending H. 1992. Population growth makes waves in the distribution of pairwise genetic differences.Mol Biol Evol. 9:552-569.
-
(1992)
Mol Biol Evol.
, vol.9
, pp. 552-569
-
-
Rogers, A.R.1
Harpending, H.2
-
77
-
-
0032814604
-
Estimation of past demographic parameters from the distribution of pairwise differences when the mutation rates vary among sites: Application to human mitochondrial DNA
-
Schneider S, Excoffier L. 1999. Estimation of past demographic parameters from the distribution of pairwise differences when the mutation rates vary among sites: application to human mitochondrial DNA. Genetics 152:1079-1089.
-
(1999)
Genetics
, vol.152
, pp. 1079-1089
-
-
Schneider, S.1
Excoffier, L.2
-
78
-
-
60849130141
-
Marine isotope stage 3 sea level fluctuations: Data synthesis and new outlook
-
Siddall M, Rohling E. 2008. Marine isotope stage 3 sea level fluctuations: data synthesis and new outlook. Rev Geophys. 46:1-29.
-
(2008)
Rev Geophys.
, vol.46
, pp. 1-29
-
-
Siddall, M.1
Rohling, E.2
-
79
-
-
33750996184
-
Comparative phylogeography of unglaciated eastern North America
-
Soltis DE, Morris AB, McLachlan JS, Manos PS, Soltis PS. 2006. Comparative phylogeography of unglaciated eastern North America. Mol Ecol. 15:4261-4293.
-
(2006)
Mol Ecol.
, vol.15
, pp. 4261-4293
-
-
Soltis, D.E.1
Morris, A.B.2
McLachlan, J.S.3
Manos, P.S.4
Soltis, P.S.5
-
80
-
-
84858697734
-
Reconstructing community assembly in time and space reveals enemy escape in a Western Palearctic insect community
-
Stone GN, Lohse K, Nicholls JA, Fuentes-Ultrilla P, Sinclair F, Schonrogge K, Csoka G, Melika G, Nieves-Aldrey J-L, Pujade-Villar J, et al. 2012. Reconstructing community assembly in time and space reveals enemy escape in a Western Palearctic insect community. Curr Biol. 22:532-537.
-
(2012)
Curr Biol.
, vol.22
, pp. 532-537
-
-
Stone, G.N.1
Lohse, K.2
Nicholls, J.A.3
Fuentes-Ultrilla, P.4
Sinclair, F.5
Schonrogge, K.6
Csoka, G.7
Melika, G.8
Nieves-Aldrey, J.-L.9
Pujade-Villar, J.10
-
81
-
-
0034091330
-
Comparative phylogeography of Mesoamerican highland rodents: Concerted versus independent response to past climatic fluctuations
-
Sullivan J, Arellano E, Rogers DS. 2000. Comparative phylogeography of Mesoamerican highland rodents: concerted versus independent response to past climatic fluctuations. Am Nat. 155:755-768.
-
(2000)
Am Nat.
, vol.155
, pp. 755-768
-
-
Sullivan, J.1
Arellano, E.2
Rogers, D.S.3
-
82
-
-
84873503481
-
Approximate Bayesian computation
-
Sunnåker M, BusettoAG, Numminen E, Corander J, Foll M, Dessimoz C. 2013. Approximate Bayesian computation. PLoS Comput Biol. 9: e1002803.
-
(2013)
PLoS Comput Biol.
, vol.9
-
-
Sunnåker, M.1
Busetto, A.G.2
Numminen, E.3
Corander, J.4
Foll, M.5
Dessimoz, C.6
-
83
-
-
0032055176
-
Comparative phylogeography and postglacial colonization routes in Europe
-
Taberlet P, Fumagalli L, Wust-Saucy AG, Cosson JF. 2002. Comparative phylogeography and postglacial colonization routes in Europe. Mol Ecol. 7:453-464.
-
(2002)
Mol Ecol.
, vol.7
, pp. 453-464
-
-
Taberlet, P.1
Fumagalli, L.2
Wust-Saucy, A.G.3
Cosson, J.F.4
-
85
-
-
83655184742
-
Evolution of arid zone birds in Australia: Leapfrog distribution patterns and mesic-arid connections in quail-thrush (Cinclosoma, Cinclosomatidae)
-
Toon A, Austin JJ, Dolman G, Pedler L, Joseph L. 2012. Evolution of arid zone birds in Australia: leapfrog distribution patterns and mesic-arid connections in quail-thrush (Cinclosoma, Cinclosomatidae). Mol Phylogenet Evol. 62:286-295.
-
(2012)
Mol Phylogenet Evol.
, vol.62
, pp. 286-295
-
-
Toon, A.1
Austin, J.J.2
Dolman, G.3
Pedler, L.4
Joseph, L.5
-
86
-
-
77954562166
-
Multilocus analysis of honeyeaters (Aves: Meliphagidae) highlights spatio-temporal heterogeneity in the influence of biogeographic barriers in the Australian monsoonal zone
-
Toon A, Hughes JM, Joseph L. 2010. Multilocus analysis of honeyeaters (Aves: Meliphagidae) highlights spatio-temporal heterogeneity in the influence of biogeographic barriers in the Australian monsoonal zone. Mol Ecol. 19:2980-2994.
-
(2010)
Mol Ecol.
, vol.19
, pp. 2980-2994
-
-
Toon, A.1
Hughes, J.M.2
Joseph, L.3
-
87
-
-
79960518550
-
Advances, challenges and a developing synthesis of ecological community assembly theory
-
Weiher E, Freund D, Bunton T, Stefanski A, Lee T, Bentivenga S. 2011. Advances, challenges and a developing synthesis of ecological community assembly theory. Philos Trans R Soc B Biol Sci. 366: 2403-2413.
-
(2011)
Philos Trans R Soc B Biol Sci.
, vol.366
, pp. 2403-2413
-
-
Weiher, E.1
Freund, D.2
Bunton, T.3
Stefanski, A.4
Lee, T.5
Bentivenga, S.6
-
88
-
-
84879129460
-
Comparative phylogeography reveals deep lineages and regional evolutionary hotspots in the Mojave and Sonoran Deserts
-
Wood DA, Vandergast AG, Barr KR, Inman RD, Esque TC, Nussear KE, Fisher RN, BodeM. 2012. Comparative phylogeography reveals deep lineages and regional evolutionary hotspots in the Mojave and Sonoran Deserts. Divers Distrib. 19:722-737.
-
(2012)
Divers Distrib.
, vol.19
, pp. 722-737
-
-
Wood, D.A.1
Vandergast, A.G.2
Barr, K.R.3
Inman, R.D.4
Esque, T.C.5
Nussear, K.E.6
Fisher, R.N.7
Bode, M.8
-
89
-
-
0032545481
-
Abrupt climate oscillations during the last deglaciation in central North America
-
Yu Z, Eicher U. 1998. Abrupt climate oscillations during the last deglaciation in central North America. Science 282:2235-2238.
-
(1998)
Science
, vol.282
, pp. 2235-2238
-
-
Yu, Z.1
Eicher, U.2
|