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Volumn 31, Issue 9, 2014, Pages 2501-2515

Detecting concerted demographic response across community assemblages using hierarchical approximate Bayesian computation

Author keywords

Approximate Bayesian computation; Comparative phylogeography; Historical demography; Response to climate change

Indexed keywords

ACCELERATION; ARTICLE; BAYES THEOREM; CLIMATE CHANGE; COMMUNITY SAMPLE; DEMOGRAPHY; DNA BARCODING; EFFECTIVE POPULATION SIZE; EVOLUTION; MUTATION RATE; PHYLOGEOGRAPHY; SAMPLE SIZE; SPECIES INVASION; UPPER PLEISTOCENE; ADAPTATION; ANIMAL; AUSTRALIA; BIOLOGY; BIRD; CLASSIFICATION; COMPUTER SIMULATION; GENETICS; PHYLOGENY; POPULATION DENSITY; PROCEDURES; STATISTICAL MODEL;

EID: 84906739384     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/msu187     Document Type: Article
Times cited : (55)

References (89)
  • 1
    • 17444424295 scopus 로고    scopus 로고
    • Serial SimCoal: A population genetics model for data from multiple populations and points in time
    • Anderson CNK, Ramakrishnan U, Chan YL, Hadly EA. 2005. Serial SimCoal: a population genetics model for data from multiple populations and points in time. Bioinformatics 21:1733-1734.
    • (2005) Bioinformatics , vol.21 , pp. 1733-1734
    • Anderson, C.N.K.1    Ramakrishnan, U.2    Chan, Y.L.3    Hadly, E.A.4
  • 2
    • 0033800842 scopus 로고    scopus 로고
    • Population genetic structure of Australian magpies: Evidence for regional differences in juvenile dispersal behaviour
    • Baker A, Mather P, Hughes J. 2000. Population genetic structure of Australian magpies: evidence for regional differences in juvenile dispersal behaviour. Heredity 85:167-176.
    • (2000) Heredity , vol.85 , pp. 167-176
    • Baker, A.1    Mather, P.2    Hughes, J.3
  • 3
    • 77956944519 scopus 로고    scopus 로고
    • Two pulses of diversification across the Isthmus of Tehuantepec in a montane Mexican bird fauna
    • Barber BR, Klicka J. 2010. Two pulses of diversification across the Isthmus of Tehuantepec in a montane Mexican bird fauna. Proc Biol Sci. 277: 2675-2681.
    • (2010) Proc Biol Sci. , vol.277 , pp. 2675-2681
    • Barber, B.R.1    Klicka, J.2
  • 4
    • 6044243344 scopus 로고    scopus 로고
    • Assessing the causes of late Pleistocene extinctions on the continents
    • Barnosky A, Koch P, Feranec R. 2004. Assessing the causes of late Pleistocene extinctions on the continents. Science 306:70-75.
    • (2004) Science , vol.306 , pp. 70-75
    • Barnosky, A.1    Koch, P.2    Feranec, R.3
  • 5
    • 77955508453 scopus 로고    scopus 로고
    • Likelihood-free inference of population structure and local adaptation in a Bayesian hierarchical model
    • Bazin E, Dawson KJ, Beaumont MA. 2010. Likelihood-free inference of population structure and local adaptation in a Bayesian hierarchical model. Genetics 185:587-602.
    • (2010) Genetics , vol.185 , pp. 587-602
    • Bazin, E.1    Dawson, K.J.2    Beaumont, M.A.3
  • 6
    • 33646253454 scopus 로고    scopus 로고
    • Population size does not influence mitochondrial genetic diversity in animal
    • Bazin E, Glemin S, Galtier N. 2006. Population size does not influence mitochondrial genetic diversity in animal. Science 312:570-572.
    • (2006) Science , vol.312 , pp. 570-572
    • Bazin, E.1    Glemin, S.2    Galtier, N.3
  • 7
    • 78149388939 scopus 로고    scopus 로고
    • Approximate Bayesian computation in evolution and ecology
    • Beaumont M. 2010. Approximate Bayesian computation in evolution and ecology. Annu Rev Ecol Evol Syst. 41:379-406.
    • (2010) Annu Rev Ecol Evol Syst. , vol.41 , pp. 379-406
    • Beaumont, M.1
  • 8
    • 1842532350 scopus 로고    scopus 로고
    • The Bayesian revolution in genetics
    • Beaumont MA, Rannala B. 2004. The Bayesian revolution in genetics. Nat Rev Genet. 5:251-261.
    • (2004) Nat Rev Genet. , vol.5 , pp. 251-261
    • Beaumont, M.A.1    Rannala, B.2
  • 9
    • 77954247262 scopus 로고    scopus 로고
    • ABC as a flexible framework to estimate demography over space and time: Some cons, many pros
    • Bertorelle G, Benazzo A, Mona S. 2010. ABC as a flexible framework to estimate demography over space and time: some cons, many pros. Mol Ecol. 19:2609-2625.
    • (2010) Mol Ecol. , vol.19 , pp. 2609-2625
    • Bertorelle, G.1    Benazzo, A.2    Mona, S.3
  • 10
    • 59849093347 scopus 로고    scopus 로고
    • Stability predicts genetic diversity in the Brazilian Atlantic forest hotspot
    • Carnaval A, Hickerson M, Haddad CFB, Rodrigues MT, Moritz C. 2009. Stability predicts genetic diversity in the Brazilian Atlantic forest hotspot. Science 323:785-789.
    • (2009) Science , vol.323 , pp. 785-789
    • Carnaval, A.1    Hickerson, M.2    Haddad, C.F.B.3    Rodrigues, M.T.4    Moritz, C.5
  • 11
    • 0031741723 scopus 로고    scopus 로고
    • The effect of Quaternary climatic changes on plant distribution and evolution
    • Comes HP, Kadereit JW. 1998. The effect of Quaternary climatic changes on plant distribution and evolution. Trends Plant Sci. 3:432-438.
    • (1998) Trends Plant Sci. , vol.3 , pp. 432-438
    • Comes, H.P.1    Kadereit, J.W.2
  • 12
    • 33749668496 scopus 로고    scopus 로고
    • Validation of software for Bayesian models using posterior quantiles
    • Cook SR, Gelman A, Rubin DB. 2006. Validation of software for Bayesian models using posterior quantiles. J Comput Graph Stat. 15:675-692.
    • (2006) J Comput Graph Stat. , vol.15 , pp. 675-692
    • Cook, S.R.1    Gelman, A.2    Rubin, D.B.3
  • 13
    • 77955493069 scopus 로고    scopus 로고
    • Inference on population history and model checking using DNA sequence and micro-satellite data with the software DIYABC(v1.0)
    • Cornuet J-M, Ravigné V, Estoup A. 2010. Inference on population history and model checking using DNA sequence and micro-satellite data with the software DIYABC(v1.0). BMC Bioinformatics 11:401.
    • (2010) BMC Bioinformatics , vol.11 , pp. 401
    • Cornuet, J.-M.1    Ravigné, V.2    Estoup, A.3
  • 15
    • 84861153207 scopus 로고    scopus 로고
    • Abc: An R package for approximate Bayesian computation (ABC)
    • Csilléry K, François O, Blum M. 2012. abc: an R package for approximate Bayesian computation (ABC). Methods Ecol Evol. 3:475-479.
    • (2012) Methods Ecol Evol. , vol.3 , pp. 475-479
    • Csilléry, K.1    François, O.2    Blum, M.3
  • 17
    • 0035957694 scopus 로고    scopus 로고
    • Range shifts and adaptive responses to Quaternary climate change
    • Davis MB, Shaw RG. 2001. Range shifts and adaptive responses to Quaternary climate change. Science 292:673-679.
    • (2001) Science , vol.292 , pp. 673-679
    • Davis, M.B.1    Shaw, R.G.2
  • 18
    • 84859855727 scopus 로고    scopus 로고
    • A species assemblage approach to comparative phylogeography of birds in southern Australia
    • Dolman G, Joseph L. 2012. A species assemblage approach to comparative phylogeography of birds in southern Australia. Ecol Evol. 2: 354-369.
    • (2012) Ecol Evol. , vol.2 , pp. 354-369
    • Dolman, G.1    Joseph, L.2
  • 19
    • 67650979386 scopus 로고    scopus 로고
    • Systematic and conservation implications of mitochondrial DNA diversity in emu-wrens, Stipiturus (Aves: Maluridae)
    • Donnellan SCA, Armstrong JA, PickettMC, Milne TC, Baulderstone JC. 2009. Systematic and conservation implications of mitochondrial DNA diversity in emu-wrens, Stipiturus (Aves: Maluridae). Emu 109:143-152.
    • (2009) Emu , vol.109 , pp. 143-152
    • Donnellan, S.C.A.1    Armstrong, J.A.2    Pickettmc Milne, T.C.3    Baulderstone, J.C.4
  • 20
    • 84868091618 scopus 로고    scopus 로고
    • Comparative phylogeography in Fijian coral reef fishes: A multi-taxa approach towards marine reserve design
    • Drew JA, Barber PH. 2012. Comparative phylogeography in Fijian coral reef fishes: a multi-taxa approach towards marine reserve design. PLoS One 7:e47710.
    • (2012) PLoS One , vol.7
    • Drew, J.A.1    Barber, P.H.2
  • 21
    • 0034255125 scopus 로고    scopus 로고
    • Evolutionary consequences of changes in species' geographical distributions driven by Milankovitch climate oscillations
    • Dynesius M, Jansson R. 2000. Evolutionary consequences of changes in species' geographical distributions driven by Milankovitch climate oscillations. Proc Natl Acad Sci U S A. 97:9115-9120.
    • (2000) Proc Natl Acad Sci U S A. , vol.97 , pp. 9115-9120
    • Dynesius, M.1    Jansson, R.2
  • 22
    • 0000518216 scopus 로고
    • Mitochondrial gene genealogy and gene flow among island and mainland populations of a sedentary songbird, the grey-crowned babbler (Pomatostomus temporalis)
    • Edwards S. 1993. Mitochondrial gene genealogy and gene flow among island and mainland populations of a sedentary songbird, the grey-crowned babbler (Pomatostomus temporalis). Evolution 47:1118-1137.
    • (1993) Evolution , vol.47 , pp. 1118-1137
    • Edwards, S.1
  • 23
    • 53649083413 scopus 로고    scopus 로고
    • Phylogenetic analysis of community assembly and structure over space and time
    • Emerson B, Gillespie R. 2008. Phylogenetic analysis of community assembly and structure over space and time. Trends Ecol Evol. 23: 619-630.
    • (2008) Trends Ecol Evol. , vol.23 , pp. 619-630
    • Emerson, B.1    Gillespie, R.2
  • 24
    • 79960535651 scopus 로고    scopus 로고
    • Phylogeny, phylogeography, phylobetadiversity and the molecular analysis of biological communities
    • Emerson BC, Cicconardi F, Fanciulli PP, Shaw PJA. 2011. Phylogeny, phylogeography, phylobetadiversity and the molecular analysis of biological communities. Philos Trans R Soc B Biol Sci. 366:2391-2402.
    • (2011) Philos Trans R Soc B Biol Sci. , vol.366 , pp. 2391-2402
    • Emerson, B.C.1    Cicconardi, F.2    Fanciulli, P.P.3    Shaw, P.J.A.4
  • 25
    • 1642388330 scopus 로고    scopus 로고
    • Patterns of DNA sequence diversity and genetic structure after a range expansion: Lessons from the infinite-island model
    • Excoffier L. 2004. Patterns of DNA sequence diversity and genetic structure after a range expansion: lessons from the infinite-island model. Mol Ecol. 13:853-864.
    • (2004) Mol Ecol. , vol.13 , pp. 853-864
    • Excoffier, L.1
  • 27
    • 0035678847 scopus 로고    scopus 로고
    • Is the population size of a species relevant to its evolution
    • Gillespie JH. 2001. Is the population size of a species relevant to its evolution. Evolution 55:2161-2169.
    • (2001) Evolution , vol.55 , pp. 2161-2169
    • Gillespie, J.H.1
  • 29
    • 0031690476 scopus 로고    scopus 로고
    • Shallow population histories in deep evolutionary lineages of marine fishes: Insights from sardines and anchovies and lessons for conservation
    • Grant WS, Bowen BW. 1998. Shallow population histories in deep evolutionary lineages of marine fishes: insights from sardines and anchovies and lessons for conservation. J Hered. 89:415-426.
    • (1998) J Hered. , vol.89 , pp. 415-426
    • Grant, W.S.1    Bowen, B.W.2
  • 30
    • 78049361626 scopus 로고    scopus 로고
    • East-west genetic differentiation in Musk Ducks (Biziura lobata) of Australia suggests late Pleistocene divergence at the Nullarbor Plain
    • Guay P-J, Chesser RT, Mulder RA, Afton AD, Paton DC, McCracken KG. 2010. East-west genetic differentiation in Musk Ducks (Biziura lobata) of Australia suggests late Pleistocene divergence at the Nullarbor Plain. Conserv Genet. 11:2105-2120.
    • (2010) Conserv Genet. , vol.11 , pp. 2105-2120
    • Guay, P.-J.1    Chesser, R.T.2    Mulder, R.A.3    Afton, A.D.4    Paton, D.C.5    McCracken, K.G.6
  • 31
    • 84877134593 scopus 로고    scopus 로고
    • The confounding effect of population structure on bayesian skyline plot inferences of demographic history
    • Heller R, Chikhi L, Siegismund H. 2013. The confounding effect of population structure on bayesian skyline plot inferences of demographic history. PLoS One 8:e62992.
    • (2013) PLoS One , vol.8
    • Heller, R.1    Chikhi, L.2    Siegismund, H.3
  • 32
    • 0034702196 scopus 로고    scopus 로고
    • The genetic legacy of the Quaternary ice ages
    • Hewitt G. 2000. The genetic legacy of the Quaternary ice ages. Nature 405:907-913.
    • (2000) Nature , vol.405 , pp. 907-913
    • Hewitt, G.1
  • 33
    • 1242299019 scopus 로고    scopus 로고
    • Genetic consequences of climatic oscillations in the Quaternary
    • Hewitt GM. 2004. Genetic consequences of climatic oscillations in the Quaternary. Philos Trans R Soc Lond B Biol Sci. 359:183.
    • (2004) Philos Trans R Soc Lond B Biol Sci. , vol.359 , pp. 183
    • Hewitt, G.M.1
  • 35
    • 58149314233 scopus 로고    scopus 로고
    • Testing comparative phylogeographic models of marine vicariance and dispersal using a hierarchical Bayesian approach
    • Hickerson MJ, Meyer C. 2008. Testing comparative phylogeographic models of marine vicariance and dispersal using a hierarchical Bayesian approach. BMC Evol Biol. 8:322.
    • (2008) BMC Evol Biol. , vol.8 , pp. 322
    • Hickerson, M.J.1    Meyer, C.2
  • 36
    • 33846875227 scopus 로고    scopus 로고
    • Test for simultaneous divergence using approximate Bayesian computation
    • Hickerson MJ, Stahl EA, Lessios HA. 2006. Test for simultaneous divergence using approximate Bayesian computation. Evolution 60: 2435-2453.
    • (2006) Evolution , vol.60 , pp. 2435-2453
    • Hickerson, M.J.1    Stahl, E.A.2    Lessios, H.A.3
  • 37
    • 84890887584 scopus 로고    scopus 로고
    • Recommendations for using msBayes to incorporate uncertainty in selecting an abc model prior: A response to Oaks et al
    • Hickerson MJ, Stone GN, Lohse K, Demos TC, Xie X, Landerer C, Takebayashi N. 2014. Recommendations for using msBayes to incorporate uncertainty in selecting an abc model prior: a response to Oaks et al. Evolution 68:284-294.
    • (2014) Evolution , vol.68 , pp. 284-294
    • Hickerson, M.J.1    Stone, G.N.2    Lohse, K.3    Demos, T.C.4    Xie, X.5    Landerer, C.6    Takebayashi, N.7
  • 38
    • 78650306888 scopus 로고    scopus 로고
    • Climate change and evolutionary adaptations at species' range margins
    • Hill JK, Griffiths HM, Thomas CD. 2011. Climate change and evolutionary adaptations at species' range margins. Annu Rev Entomol. 56: 143-159.
    • (2011) Annu Rev Entomol. , vol.56 , pp. 143-159
    • Hill, J.K.1    Griffiths, H.M.2    Thomas, C.D.3
  • 40
    • 78650725611 scopus 로고    scopus 로고
    • MTML-msBayes: Approximate Bayesian comparative phylogeographic inference from multiple taxa and multiple loci with rate heterogeneity
    • Huang W, Takebayashi N, Qi Y, Hickerson MJ. 2011. MTML-msBayes: approximate Bayesian comparative phylogeographic inference from multiple taxa and multiple loci with rate heterogeneity. BMC Bioinformatics 12:1.
    • (2011) BMC Bioinformatics , vol.12 , pp. 1
    • Huang, W.1    Takebayashi, N.2    Qi, Y.3    Hickerson, M.J.4
  • 42
    • 79954569160 scopus 로고    scopus 로고
    • Skyline-plot methods for estimating demographic history from nucleotide sequences
    • Ho SYW, Shapiro B. 2011. Skyline-plot methods for estimating demographic history from nucleotide sequences. Mol Ecol Resour. 11: 423-434.
    • (2011) Mol Ecol Resour. , vol.11 , pp. 423-434
    • Ho, S.Y.W.1    Shapiro, B.2
  • 43
    • 78649302845 scopus 로고    scopus 로고
    • Colonization and/or mitochondrial selective sweeps across the North Atlantic intertidal assemblage revealed by multi-taxa approximate Bayesian computation
    • Ilves KL, Huang W, Wares JP, Hickerson MJ. 2010. Colonization and/or mitochondrial selective sweeps across the North Atlantic intertidal assemblage revealed by multi-taxa approximate Bayesian computation. Mol Ecol. 19:4505-4519.
    • (2010) Mol Ecol. , vol.19 , pp. 4505-4519
    • Ilves, K.L.1    Huang, W.2    Wares, J.P.3    Hickerson, M.J.4
  • 45
    • 67749093560 scopus 로고    scopus 로고
    • A tangled tale of two teal: Population history of the grey Anas gracilis and chestnut teal A. Castanea of Australia
    • Joseph L, Adcock GJ, Linde C, Omland KE, Heinsohn R, Terry Chesser R, Roshier D. 2009. A tangled tale of two teal: population history of the grey Anas gracilis and chestnut teal A. castanea of Australia. J Avian Biol. 40:430-439.
    • (2009) J Avian Biol. , vol.40 , pp. 430-439
    • Joseph, L.1    Adcock, G.J.2    Linde, C.3    Omland, K.E.4    Heinsohn, R.5    Terry Chesser, R.6    Roshier, D.7
  • 46
    • 52749090706 scopus 로고    scopus 로고
    • Where and when does a ring start and end? Testing the ringspecies hypothesis in a species complex of Australian parrots
    • Joseph L, Dolman G, Donnellan S, Saint KM, Berg ML, Bennett ATD. 2008. Where and when does a ring start and end? Testing the ringspecies hypothesis in a species complex of Australian parrots. Proc Biol Sci. 275:2431-2440.
    • (2008) Proc Biol Sci. , vol.275 , pp. 2431-2440
    • Joseph, L.1    Dolman, G.2    Donnellan, S.3    Saint, K.M.4    Berg, M.L.5    Bennett, A.T.D.6
  • 47
    • 33644870643 scopus 로고    scopus 로고
    • Molecular resolution of population history, systematics and historical biogeography of the Australian ringneck parrots Barnardius: Are we there yet?
    • Joseph L, Wilke T. 2006. Molecular resolution of population history, systematics and historical biogeography of the Australian ringneck parrots Barnardius: are we there yet? Emu 106:49.
    • (2006) Emu , vol.106 , pp. 49
    • Joseph, L.1    Wilke, T.2
  • 48
    • 0036010844 scopus 로고    scopus 로고
    • Reconciling genetic expectations from host specificity with historical population dynamics in an avian brood parasite, Horsfield's Bronze-Cuckoo Chalcites basalis of Australia
    • Joseph L, Wilke T, Alpers D. 2002. Reconciling genetic expectations from host specificity with historical population dynamics in an avian brood parasite, Horsfield's Bronze-Cuckoo Chalcites basalis of Australia. Mol Ecol. 11:829-837.
    • (2002) Mol Ecol. , vol.11 , pp. 829-837
    • Joseph, L.1    Wilke, T.2    Alpers, D.3
  • 49
    • 79957858338 scopus 로고    scopus 로고
    • Phylogeography and taxonomy of the Little Bronze-Cuckoo (Chalcites minutillus) in Australia
    • Joseph L, Zeriga T, Adcock G, Langmore N. 2011. Phylogeography and taxonomy of the Little Bronze-Cuckoo (Chalcites minutillus) in Australia. Emu 111:113-119.
    • (2011) Emu , vol.111 , pp. 113-119
    • Joseph, L.1    Zeriga, T.2    Adcock, G.3    Langmore, N.4
  • 51
    • 78649582958 scopus 로고    scopus 로고
    • The impact of Pleistocene changes of climate and landscape on Australian birds: A test using the Pied Butcherbird (Cracticus nigrogularis)
    • Kearns AM, Joseph L, Cook LG. 2010. The impact of Pleistocene changes of climate and landscape on Australian birds: a test using the Pied Butcherbird (Cracticus nigrogularis). Emu 110:285.
    • (2010) Emu , vol.110 , pp. 285
    • Kearns, A.M.1    Joseph, L.2    Cook, L.G.3
  • 52
    • 58249100052 scopus 로고    scopus 로고
    • Inferring the phylogeography and evolutionary history of the splendid fairywren Malurus splendens from mitochondrial DNA and spectrophotometry
    • Kearns AM, Joseph L, Edwards SV, Double MC. 2009. Inferring the phylogeography and evolutionary history of the splendid fairywren Malurus splendens from mitochondrial DNA and spectrophotometry. J Avian Biol. 40:7-17.
    • (2009) J Avian Biol. , vol.40 , pp. 7-17
    • Kearns, A.M.1    Joseph, L.2    Edwards, S.V.3    Double, M.C.4
  • 53
    • 81855207249 scopus 로고    scopus 로고
    • Testing the effect of transient Plio-Pleistocene barriers in monsoonal Australo-Papua: Did mangrove habitats maintain genetic connectivity in the Black Butcherbird?
    • Kearns AM, Joseph L, Omland KE, Cook LG. 2011. Testing the effect of transient Plio-Pleistocene barriers in monsoonal Australo-Papua: did mangrove habitats maintain genetic connectivity in the Black Butcherbird? Mol Ecol. 20:5042-5059.
    • (2011) Mol Ecol. , vol.20 , pp. 5042-5059
    • Kearns, A.M.1    Joseph, L.2    Omland, K.E.3    Cook, L.G.4
  • 54
  • 55
    • 0031835126 scopus 로고    scopus 로고
    • Maximum likelihood estimation of population growth rates based on the coalescent
    • Kuhner MK, Yamato J, Felsenstein J. 1998. Maximum likelihood estimation of population growth rates based on the coalescent. Genetics 149:429-434.
    • (1998) Genetics , vol.149 , pp. 429-434
    • Kuhner, M.K.1    Yamato, J.2    Felsenstein, J.3
  • 56
    • 78149404626 scopus 로고    scopus 로고
    • Biodiversity and climate change: Integrating evolutionary and ecological responses of species and communities
    • Lavergne S, Mouquet N, Thuiller W, Ronce O. 2010. Biodiversity and climate change: integrating evolutionary and ecological responses of species and communities. Annu Rev Ecol Evol Syst. 41: 321-350.
    • (2010) Annu Rev Ecol Evol Syst. , vol.41 , pp. 321-350
    • Lavergne, S.1    Mouquet, N.2    Thuiller, W.3    Ronce, O.4
  • 57
    • 57249086459 scopus 로고    scopus 로고
    • Divergence across Australia's Carpentarian barrier: Statistical phylogeography of the red-backed fairy wren (Malurus melanocephalus)
    • Lee JY, Edwards SV. 2008. Divergence across Australia's Carpentarian barrier: statistical phylogeography of the red-backed fairy wren (Malurus melanocephalus). Evolution 62:3117-3134.
    • (2008) Evolution , vol.62 , pp. 3117-3134
    • Lee, J.Y.1    Edwards, S.V.2
  • 59
    • 84908574158 scopus 로고    scopus 로고
    • Relevant statistics for Bayesian model choice
    • Advance Access published December 9, 2013, doi: 10.1111/rssb.12056
    • Marin J-M, Pillai N, Robert CP, Rousseau J. 2013. Relevant statistics for Bayesian model choice. J Royal Stat Soc Series B. Advance Access published December 9, 2013, doi: 10.1111/rssb.12056.
    • (2013) J Royal Stat Soc Series B
    • Marin, J.-M.1    Pillai, N.2    Robert, C.P.3    Rousseau, J.4
  • 60
    • 84859823035 scopus 로고    scopus 로고
    • Speciation in chestnut-shouldered fairy-wrens (Malurus spp.) and rapid phenotypic divergence in variegated fairy-wrens (Malurus lamberti): A multilocus approach
    • McLean AJ, Toon A, Schmidt DJ, Joseph L, Hughes JM. 2012. Speciation in chestnut-shouldered fairy-wrens (Malurus spp.) and rapid phenotypic divergence in variegated fairy-wrens (Malurus lamberti): a multilocus approach. Mol Phylogenet Evol. 63:668-678.
    • (2012) Mol Phylogenet Evol. , vol.63 , pp. 668-678
    • McLean, A.J.1    Toon, A.2    Schmidt, D.J.3    Joseph, L.4    Hughes, J.M.5
  • 61
    • 53749104933 scopus 로고    scopus 로고
    • Phylogeography of post- Pleistocene population expansion in a fungus-gardening ant and its microbial mutualists
    • Mikheyev AS, Vo T, Mueller UG. 2008. Phylogeography of post- Pleistocene population expansion in a fungus-gardening ant and its microbial mutualists. Mol Ecol. 17:4480-4488.
    • (2008) Mol Ecol. , vol.17 , pp. 4480-4488
    • Mikheyev, A.S.1    Vo, T.2    Mueller, U.G.3
  • 62
    • 80054825281 scopus 로고    scopus 로고
    • Comparative phylogeography reveals a shared impact of pleistocene environmental change in shaping genetic diversity within nine Anopheles mosquito species across the Indo-Burma biodiversity hotspot
    • Morgan K, O'Loughlin SM, Chen B, Linton Y-M, Thongwat D, Somboon P, Fong MY, Butlin R, Verity R, Prakash A, et al. 2011. Comparative phylogeography reveals a shared impact of pleistocene environmental change in shaping genetic diversity within nine Anopheles mosquito species across the Indo-Burma biodiversity hotspot. Mol Ecol. 20:4533-4549.
    • (2011) Mol Ecol. , vol.20 , pp. 4533-4549
    • Morgan, K.1    O'Loughlin, S.M.2    Chen, B.3    Linton, Y.-M.4    Thongwat, D.5    Somboon, P.6    Fong, M.Y.7    Butlin, R.8    Verity, R.9    Prakash, A.10
  • 63
    • 79952699738 scopus 로고    scopus 로고
    • A cryptic and critically endangered species revealed by mitochondrial DNA analyses: The Western Ground Parrot
    • Murphy SA, Joseph L, Burbidge AH, Austin J. 2010. A cryptic and critically endangered species revealed by mitochondrial DNA analyses: the Western Ground Parrot. Conserv Genet. 12:595-600.
    • (2010) Conserv Genet. , vol.12 , pp. 595-600
    • Murphy, S.A.1    Joseph, L.2    Burbidge, A.H.3    Austin, J.4
  • 64
    • 38349192060 scopus 로고    scopus 로고
    • Strong variations of mitochondrial mutation rate across mammals-The longevity hypothesis
    • Nabholz B, Glémin S, Galtier N. 2008. Strong variations of mitochondrial mutation rate across mammals-the longevity hypothesis. Mol Biol Evol. 25:120-130.
    • (2008) Mol Biol Evol. , vol.25 , pp. 120-130
    • Nabholz, B.1    Glémin, S.2    Galtier, N.3
  • 65
    • 70350045010 scopus 로고    scopus 로고
    • Elevated substitution rate estimates from ancient DNA: Model violation and bias of Bayesian methods
    • Navascués M, Emerson BC. 2009. Elevated substitution rate estimates from ancient DNA: model violation and bias of Bayesian methods. Mol Ecol. 18:4390-4397.
    • (2009) Mol Ecol. , vol.18 , pp. 4390-4397
    • Navascués, M.1    Emerson, B.C.2
  • 66
    • 17644391776 scopus 로고    scopus 로고
    • Phylogeography of an east Australian wetforest bird, the satin bowerbird (Ptilonorhynchus violaceus), derived from mtDNA, and its relationship to morphology
    • Nicholls JA, Austin JJ. 2005. Phylogeography of an east Australian wetforest bird, the satin bowerbird (Ptilonorhynchus violaceus), derived from mtDNA, and its relationship to morphology. Mol Ecol. 14:1485-1496.
    • (2005) Mol Ecol. , vol.14 , pp. 1485-1496
    • Nicholls, J.A.1    Austin, J.J.2
  • 67
    • 0043023774 scopus 로고    scopus 로고
    • 340, 000-year centennialscale marine record of Southern Hemisphere climatic oscillation
    • Pahnke K, Zahn R, Elderfield H, Schulz M. 2003. 340, 000-year centennialscale marine record of Southern Hemisphere climatic oscillation. Science 301:948-952.
    • (2003) Science , vol.301 , pp. 948-952
    • Pahnke, K.1    Zahn, R.2    Elderfield, H.3    Schulz, M.4
  • 68
    • 84888834488 scopus 로고    scopus 로고
    • Perched at the mito-nuclear crossroads: Divergent mitochondrial lineages correlate with environment in the face of ongoing nuclear gene flow in an Australian bird
    • Pavlova A, Amos JN, Joseph L, Loynes K, Austin JJ, Keogh JS, Stone GN, Nicholls JA, Sunnucks P. 2013. Perched at the mito-nuclear crossroads: divergent mitochondrial lineages correlate with environment in the face of ongoing nuclear gene flow in an Australian bird. Evolution 67:3412-3428.
    • (2013) Evolution , vol.67 , pp. 3412-3428
    • Pavlova, A.1    Amos, J.N.2    Joseph, L.3    Loynes, K.4    Austin, J.J.5    Keogh, J.S.6    Stone, G.N.7    Nicholls, J.A.8    Sunnucks, P.9
  • 69
    • 0032735986 scopus 로고    scopus 로고
    • Population growth of human y chromosomes: A study of y chromosome microsatellites
    • Pritchard JK, Seielstad MT, Perez-Lezaun A, Feldman MW. 1999. Population growth of human Y chromosomes: a study of Y chromosome microsatellites. Mol Biol Evol. 16:1791-1798.
    • (1999) Mol Biol Evol. , vol.16 , pp. 1791-1798
    • Pritchard, J.K.1    Seielstad, M.T.2    Perez-Lezaun, A.3    Feldman, M.W.4
  • 70
    • 84864023000 scopus 로고    scopus 로고
    • The effect of historical legacy on adaptation: Do closely related species respond to the environment in the same way?
    • Prunier R, Holsinger KE, Carlson JE. 2012. The effect of historical legacy on adaptation: do closely related species respond to the environment in the same way? J Evol Biol. 25:1636-1649.
    • (2012) J Evol Biol. , vol.25 , pp. 1636-1649
    • Prunier, R.1    Holsinger, K.E.2    Carlson, J.E.3
  • 71
    • 84863304598 scopus 로고    scopus 로고
    • R Development Core Team.. Vienna (Austria): R Foundation for Statistical Computing.
    • R Development Core Team. 2008. R: a language and environment for statistical computing. Vienna (Austria): R Foundation for Statistical Computing.
    • (2008) R: A Language and Environment for Statistical Computing
  • 72
    • 62849103887 scopus 로고    scopus 로고
    • Using phylochronology to reveal cryptic population histories: Review and synthesis of 29 ancient DNA studies
    • Ramakrishnan U, Hadly EA. 2009. Using phylochronology to reveal cryptic population histories: review and synthesis of 29 ancient DNA studies. Mol Ecol. 18:1310-1330.
    • (2009) Mol Ecol. , vol.18 , pp. 1310-1330
    • Ramakrishnan, U.1    Hadly, E.A.2
  • 73
    • 34248149943 scopus 로고    scopus 로고
    • BOLD: The barcode of life data system
    • Ratnasingham S, Hebert P. 2007. BOLD: the Barcode of Life Data System (www.barcodinglife.org). Mol Ecol Notes. 7:355-364.
    • (2007) Mol Ecol Notes. , vol.7 , pp. 355-364
    • Ratnasingham, S.1    Hebert, P.2
  • 74
    • 0037227366 scopus 로고    scopus 로고
    • Intra-deme molecular diversity in spatially expanding populations
    • Ray N, Currat M, Excoffier L. 2003. Intra-deme molecular diversity in spatially expanding populations. Mol Biol Evol. 20:76-86.
    • (2003) Mol Biol Evol. , vol.20 , pp. 76-86
    • Ray, N.1    Currat, M.2    Excoffier, L.3
  • 75
  • 76
    • 0026548159 scopus 로고
    • Population growth makes waves in the distribution of pairwise genetic differences
    • Rogers AR, Harpending H. 1992. Population growth makes waves in the distribution of pairwise genetic differences.Mol Biol Evol. 9:552-569.
    • (1992) Mol Biol Evol. , vol.9 , pp. 552-569
    • Rogers, A.R.1    Harpending, H.2
  • 77
    • 0032814604 scopus 로고    scopus 로고
    • Estimation of past demographic parameters from the distribution of pairwise differences when the mutation rates vary among sites: Application to human mitochondrial DNA
    • Schneider S, Excoffier L. 1999. Estimation of past demographic parameters from the distribution of pairwise differences when the mutation rates vary among sites: application to human mitochondrial DNA. Genetics 152:1079-1089.
    • (1999) Genetics , vol.152 , pp. 1079-1089
    • Schneider, S.1    Excoffier, L.2
  • 78
    • 60849130141 scopus 로고    scopus 로고
    • Marine isotope stage 3 sea level fluctuations: Data synthesis and new outlook
    • Siddall M, Rohling E. 2008. Marine isotope stage 3 sea level fluctuations: data synthesis and new outlook. Rev Geophys. 46:1-29.
    • (2008) Rev Geophys. , vol.46 , pp. 1-29
    • Siddall, M.1    Rohling, E.2
  • 81
    • 0034091330 scopus 로고    scopus 로고
    • Comparative phylogeography of Mesoamerican highland rodents: Concerted versus independent response to past climatic fluctuations
    • Sullivan J, Arellano E, Rogers DS. 2000. Comparative phylogeography of Mesoamerican highland rodents: concerted versus independent response to past climatic fluctuations. Am Nat. 155:755-768.
    • (2000) Am Nat. , vol.155 , pp. 755-768
    • Sullivan, J.1    Arellano, E.2    Rogers, D.S.3
  • 83
    • 0032055176 scopus 로고    scopus 로고
    • Comparative phylogeography and postglacial colonization routes in Europe
    • Taberlet P, Fumagalli L, Wust-Saucy AG, Cosson JF. 2002. Comparative phylogeography and postglacial colonization routes in Europe. Mol Ecol. 7:453-464.
    • (2002) Mol Ecol. , vol.7 , pp. 453-464
    • Taberlet, P.1    Fumagalli, L.2    Wust-Saucy, A.G.3    Cosson, J.F.4
  • 84
    • 0031014291 scopus 로고    scopus 로고
    • Inferring coalescence times from DNA sequence data
    • Tavare S, Balding D, Griffiths R, Donnelly P. 1997. Inferring coalescence times from DNA sequence data. Genetics 145:505-518.
    • (1997) Genetics , vol.145 , pp. 505-518
    • Tavare, S.1    Balding, D.2    Griffiths, R.3    Donnelly, P.4
  • 85
    • 83655184742 scopus 로고    scopus 로고
    • Evolution of arid zone birds in Australia: Leapfrog distribution patterns and mesic-arid connections in quail-thrush (Cinclosoma, Cinclosomatidae)
    • Toon A, Austin JJ, Dolman G, Pedler L, Joseph L. 2012. Evolution of arid zone birds in Australia: leapfrog distribution patterns and mesic-arid connections in quail-thrush (Cinclosoma, Cinclosomatidae). Mol Phylogenet Evol. 62:286-295.
    • (2012) Mol Phylogenet Evol. , vol.62 , pp. 286-295
    • Toon, A.1    Austin, J.J.2    Dolman, G.3    Pedler, L.4    Joseph, L.5
  • 86
    • 77954562166 scopus 로고    scopus 로고
    • Multilocus analysis of honeyeaters (Aves: Meliphagidae) highlights spatio-temporal heterogeneity in the influence of biogeographic barriers in the Australian monsoonal zone
    • Toon A, Hughes JM, Joseph L. 2010. Multilocus analysis of honeyeaters (Aves: Meliphagidae) highlights spatio-temporal heterogeneity in the influence of biogeographic barriers in the Australian monsoonal zone. Mol Ecol. 19:2980-2994.
    • (2010) Mol Ecol. , vol.19 , pp. 2980-2994
    • Toon, A.1    Hughes, J.M.2    Joseph, L.3
  • 89
    • 0032545481 scopus 로고    scopus 로고
    • Abrupt climate oscillations during the last deglaciation in central North America
    • Yu Z, Eicher U. 1998. Abrupt climate oscillations during the last deglaciation in central North America. Science 282:2235-2238.
    • (1998) Science , vol.282 , pp. 2235-2238
    • Yu, Z.1    Eicher, U.2


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