Serial SimCoal: A population genetics model for data from multiple populations and points in time

Bioinformatics

Volumn 21, Issue 8, 2005, Pages 1733-1734

  Anderson, Christian N K ^a   Ramakrishnan, Uma ^a   Chan, Yvonne L ^a   Hadly, Elizabeth A ^a  

^a STANFORD UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA;

ARTICLE; CALCULATION; COMPUTER MODEL; COMPUTER PROGRAM; DATA ANALYSIS; DEMOGRAPHY; DEVICE; HYPOTHESIS; POPULATION GENETICS; POPULATION MIGRATION; PRIORITY JOURNAL; SAMPLE SIZE; STATISTICAL ANALYSIS; TIME;

EID: 17444424295     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/bti154     Document Type: Article

References (9)

1. Beaumont,M.A., Zhang,W. and Balding,D.J. (2002) Approximate Bayesian computation in population genetics. Genet., 162, 2025-2035.
2. Drummond,A.J., Nicholls,G.K., Rodrigo,A.G. and Solomon,W. (2002) Estimating mutation parameters, population history and genealogy simultaneously from temporally spaced sequence data. Genet., 161 1307-1320.
3. Excoffier,L., Novembre,J. and Schneider,S. (2000) SimCoal: a general coalescent program for simulation of molecular data in interconnected populations with arbitrary demography. J. Hered., 91, 506-509.
4. Hadly,E.A., Ramakrishnan,U., Chan,Y.L., van Tuinen,M, Conroy,C., Spaeth,P.E. and O'Keefe,K. (2004) Genetic response to climatic change: insights from ancient DNA and phylochronology. PLoS Biol., 2, e290.
5. Hudson,R.R. (1990) Gene genealogies and the coalescent process. Oxf. Surv. Evol. Biol., 7, 1-44.
6. Hofreiter,M., Serre,D., Poinar,H.N., Kuch,M. and Paabo,S. (2001) Ancient DNA. Nat. Rev. Genet., 2, 353-359.
7. Kingman,J.F.C. (1982) The coalescent. Stoc. Proc. Ap., 13, 235-248.
8. Lambert,D.M., Ritchie,P.A., Millar,C.D., Holland,B., Drummond,A.J. and Baroni,C. (2002) Rates of evolution in ancient DNA from Adelie penguins. Science, 295, 2270-2273.
9. Rodrigo,A.G. and Felsenstein,J. (1999) Coalescent approaches to HIV-1 population genetics. In Crandall,K.A., ed. The Evolution of HIV. Johns Hopkins University Press.