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Volumn 3, Issue 3, 2012, Pages 475-479

Abc: An R package for approximate Bayesian computation (ABC)

Author keywords

Coalescent; Model based inference; Neural networks; Population genetics

Indexed keywords


EID: 84861153207     PISSN: None     EISSN: 2041210X     Source Type: Journal    
DOI: 10.1111/j.2041-210X.2011.00179.x     Document Type: Article
Times cited : (539)

References (34)
  • 1
    • 17444424295 scopus 로고    scopus 로고
    • Serial SimCoal: a population genetics model for data from multiple populations and points in time
    • Anderson, C.N.K., Ramakrishnan, U., Chan, Y.L. & Hadly, E.A. (2005) Serial SimCoal: a population genetics model for data from multiple populations and points in time. Bioinformatics, 21, 1733-1734.
    • (2005) Bioinformatics , vol.21 , pp. 1733-1734
    • Anderson, C.N.K.1    Ramakrishnan, U.2    Chan, Y.L.3    Hadly, E.A.4
  • 2
    • 58149282899 scopus 로고    scopus 로고
    • Joint determination of topology, divergence time, and immigration in population trees
    • eds Matsumura, S. Forster P. & Renfrew, C.) - McDonald Institute Monographs, UK.
    • Beaumont, M.A. (2008) Joint determination of topology, divergence time, and immigration in population trees. Simulation, Genetics and Human Prehistory, McDonald Institute Monographs (eds Matsumura, S. Forster P. & Renfrew, C.), pp. 134-1541. McDonald Institute Monographs, UK.
    • (2008) Simulation, Genetics and Human Prehistory, McDonald Institute Monographs , pp. 134-1541
    • Beaumont, M.A.1
  • 4
    • 0036964474 scopus 로고    scopus 로고
    • Approximate Bayesian computation in population genetics
    • Beaumont, M.A., Zhang, W. & Balding, D.J. (2002) Approximate Bayesian computation in population genetics. Genetics, 162, 2025-2035.
    • (2002) Genetics , vol.162 , pp. 2025-2035
    • Beaumont, M.A.1    Zhang, W.2    Balding, D.J.3
  • 6
    • 77954247262 scopus 로고    scopus 로고
    • ABC as a flexible framework to estimate demography over space and time: some cons, many pros
    • Bertorelle, G., Benazzo, A. & Mona, S. (2010) ABC as a flexible framework to estimate demography over space and time: some cons, many pros. Molecular Ecology, 19, 2609-2625.
    • (2010) Molecular Ecology , vol.19 , pp. 2609-2625
    • Bertorelle, G.1    Benazzo, A.2    Mona, S.3
  • 7
    • 77956219298 scopus 로고    scopus 로고
    • Approximate Bayesian computation: a nonparametric perspective
    • Blum, M.G.B. (2010) Approximate Bayesian computation: a nonparametric perspective. Journal of the American Statistical Association, 105, 1178-1187.
    • (2010) Journal of the American Statistical Association , vol.105 , pp. 1178-1187
    • Blum, M.G.B.1
  • 8
    • 73549122582 scopus 로고    scopus 로고
    • Non-linear regression models for approximate Bayesian computation
    • Blum, M.G.B. & François, O. (2010) Non-linear regression models for approximate Bayesian computation. Statistics and Computing, 20, 63-73.
    • (2010) Statistics and Computing , vol.20 , pp. 63-73
    • Blum, M.G.B.1    François, O.2
  • 10
    • 77953065916 scopus 로고    scopus 로고
    • 2BAD: an application to estimate the parental contributions during two independent admixture events
    • Bray, T.C., Sousa, V., Parreira, B., Bruford, M. & & Chikhi, L. (2010) 2BAD: an application to estimate the parental contributions during two independent admixture events. Molecular Ecology Resources, 10, 538-541.
    • (2010) Molecular Ecology Resources , vol.10 , pp. 538-541
    • Bray, T.C.1    Sousa, V.2    Parreira, B.3    Bruford, M.A.4    Chikhi, L.5
  • 12
    • 77955493069 scopus 로고    scopus 로고
    • Inference on population history and model checking using DNA sequence and microsatellite data with the software DIYABC (v1.0)
    • ISSN 1471-2105
    • Cornuet, J.M., Ravigne, V. & Estoup, A. (2010) Inference on population history and model checking using DNA sequence and microsatellite data with the software DIYABC (v1.0). BMC Bioinformatics, 11, 401. ISSN 1471-2105.
    • (2010) BMC Bioinformatics , vol.11 , pp. 401
    • Cornuet, J.M.1    Ravigne, V.2    Estoup, A.3
  • 14
    • 79954469204 scopus 로고    scopus 로고
    • Fastsimcoal: a continuous-time coalescent simulator of genomic diversity under arbitrarily complex evolutionary scenarios
    • Excoffier, L. & Foll, M. (2011) Fastsimcoal: a continuous-time coalescent simulator of genomic diversity under arbitrarily complex evolutionary scenarios. Bioinformatics, 27, 1332.
    • (2011) Bioinformatics , vol.27 , pp. 1332
    • Excoffier, L.1    Foll, M.2
  • 16
  • 19
    • 34548065664 scopus 로고    scopus 로고
    • msBayes: Pipeline for testing comparative phylogeographic histories using hierarchical approximate Bayesian computation
    • ISSN 1471-2105.
    • Hickerson, M.J., Stahl, E. & Takebayashi, N. (2007) msBayes: Pipeline for testing comparative phylogeographic histories using hierarchical approximate Bayesian computation. BMC Bioinformatics, 8, 268. ISSN 1471-2105.
    • (2007) BMC Bioinformatics , vol.8 , pp. 268
    • Hickerson, M.J.1    Stahl, E.2    Takebayashi, N.3
  • 20
    • 78650725611 scopus 로고    scopus 로고
    • MTML-msBayes: approximate Bayesian comparative phylogeographic inference from multiple taxa and multiple loci with rate heterogeneity
    • ISSN 1471-2105.
    • Huang, W., Takebayashi, N., Qi, Y. & Hickerson, M.J. (2011) MTML-msBayes: approximate Bayesian comparative phylogeographic inference from multiple taxa and multiple loci with rate heterogeneity. BMC Bioinformatics, 12, 1. ISSN 1471-2105.
    • (2011) BMC Bioinformatics , vol.12 , pp. 1
    • Huang, W.1    Takebayashi, N.2    Qi, Y.3    Hickerson, M.J.4
  • 21
    • 0036184745 scopus 로고    scopus 로고
    • Generating samples under a Wright-Fisher neutral model of genetic variation
    • Hudson, R.R. (2002) Generating samples under a Wright-Fisher neutral model of genetic variation. Bioinformatics, 18, 337-338.
    • (2002) Bioinformatics , vol.18 , pp. 337-338
    • Hudson, R.R.1
  • 22
    • 57249114502 scopus 로고    scopus 로고
    • REJECTOR: software for population history inference from genetic data via a rejection algorithm
    • Jobin, M.J. & Mountain, J.L. (2008) REJECTOR: software for population history inference from genetic data via a rejection algorithm. Bioinformatics, 24, 2936-2937.
    • (2008) Bioinformatics , vol.24 , pp. 2936-2937
    • Jobin, M.J.1    Mountain, J.L.2
  • 24
    • 70349978987 scopus 로고    scopus 로고
    • PopABC: a program to infer historical demographic parameters
    • Lopes, J.S., Balding, D. & Beaumont, M.A. (2009) PopABC: a program to infer historical demographic parameters. Bioinformatics, 25, 2747-2749.
    • (2009) Bioinformatics , vol.25 , pp. 2747-2749
    • Lopes, J.S.1    Balding, D.2    Beaumont, M.A.3
  • 26
    • 77954714407 scopus 로고    scopus 로고
    • msABC: a modification of Hudson's ms to facilitate multi-locus ABC analysis
    • Pavlidis, P., Laurent, S. & Stephan, W. (2010) msABC: a modification of Hudson's ms to facilitate multi-locus ABC analysis. Molecular Ecology Resources, 10, 723-727.
    • (2010) Molecular Ecology Resources , vol.10 , pp. 723-727
    • Pavlidis, P.1    Laurent, S.2    Stephan, W.3
  • 28
    • 79961135005 scopus 로고    scopus 로고
    • R Development Core Team R Foundation for Statistical Computing, Vienna, Austria. ISBN 3-900051-07-0.
    • R Development Core Team (2011) R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna, Austria. ISBN 3-900051-07-0.
    • (2011) R: A Language and Environment for Statistical Computing
  • 30
    • 67650327255 scopus 로고    scopus 로고
    • Approximate Bayesian computation without summary statistics: the case of admixture
    • Sousa, V.C., Fritz, M., Beaumont, M.A. & Chikhi, L. (2009) Approximate Bayesian computation without summary statistics: the case of admixture. Genetics, 181, 1507.
    • (2009) Genetics , vol.181 , pp. 1507
    • Sousa, V.C.1    Fritz, M.2    Beaumont, M.A.3    Chikhi, L.4
  • 31
    • 38949178372 scopus 로고    scopus 로고
    • COMPUTER PROGRAMS: onesamp: a program to estimate effective population size using approximate Bayesian computation
    • ISSN 1755-0998
    • Tallmon, D.A., Koyuk, A., Luikart, G. & Beaumont, M.A. (2008) COMPUTER PROGRAMS: onesamp: a program to estimate effective population size using approximate Bayesian computation. Molecular Ecology Resources, 8, 299-301. ISSN 1755-0998.
    • (2008) Molecular Ecology Resources , vol.8 , pp. 299-301
    • Tallmon, D.A.1    Koyuk, A.2    Luikart, G.3    Beaumont, M.A.4
  • 32
    • 0031014291 scopus 로고    scopus 로고
    • Inferring coalescence times from DNA sequence data
    • Tavaré, S., Balding, D.J., Griffiths, R.C. & Donnelly, P. (1997) Inferring coalescence times from DNA sequence data. Genetics, 145, 505-518.
    • (1997) Genetics , vol.145 , pp. 505-518
    • Tavaré, S.1    Balding, D.J.2    Griffiths, R.C.3    Donnelly, P.4
  • 33
    • 67749135914 scopus 로고    scopus 로고
    • Automating approximate Bayesian computation by local linear regression
    • ISSN 1471-2156.
    • Thornton, K.R. (2009) Automating approximate Bayesian computation by local linear regression. BMC Genetics, 10, 35. ISSN 1471-2156.
    • (2009) BMC Genetics , vol.10 , pp. 35
    • Thornton, K.R.1
  • 34
    • 77951177432 scopus 로고    scopus 로고
    • ABCtoolbox: a versatile toolkit for approximate Bayesian computations
    • ISSN 1471-2105
    • Wegmann, D., Leuenberger, C., Neuenschwander, S. & Excoffier, L. (2010) ABCtoolbox: a versatile toolkit for approximate Bayesian computations. BMC Bioinformatics, 11, 116. ISSN 1471-2105.
    • (2010) BMC Bioinformatics , vol.11 , pp. 116
    • Wegmann, D.1    Leuenberger, C.2    Neuenschwander, S.3    Excoffier, L.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.