-
1
-
-
0042634161
-
Likelihood-based inference for genetic correlation coefficients
-
BALDING, D. J., 2003 Likelihood-based inference for genetic correlation coefficients. Theor. Popul. Biol. 63: 221-230.
-
(2003)
Theor. Popul. Biol.
, vol.63
, pp. 221-230
-
-
Balding, D.J.1
-
2
-
-
0028221074
-
DNA profile match probability calculations: How to allow for population stratification, relatedness, database selection and single bands
-
BALDING, D. J., and R. A. NICHOLS, 1994 DNA profile match probability calculations: how to allow for population stratification, relatedness, database selection and single bands. Forensic Sci. Int. 64: 125-140.
-
(1994)
Forensic Sci. Int.
, vol.64
, pp. 125-140
-
-
Balding, D.J.1
Nichols, R.A.2
-
3
-
-
84966160759
-
The barrier to genetic exchange between hybridising populations
-
BARTON, N., and B. BENGTSSON, 1986 The barrier to genetic exchange between hybridising populations. Heredity 56: 357-376.
-
(1986)
Heredity
, vol.56
, pp. 357-376
-
-
Barton, N.1
Bengtsson, B.2
-
4
-
-
64549130616
-
On the elimination of nuisance parameters
-
BASU, D., 1977 On the elimination of nuisance parameters. J. Am. Stat. Assoc. 72: 355-366.
-
(1977)
J. Am. Stat. Assoc.
, vol.72
, pp. 355-366
-
-
Basu, D.1
-
5
-
-
47649106480
-
Selection and sticklebacks
-
BEAUMONT, M., 2008 Selection and sticklebacks. Mol. Ecol. 17: 3425-3427.
-
(2008)
Mol. Ecol.
, vol.17
, pp. 3425-3427
-
-
Beaumont, M.1
-
6
-
-
1642269679
-
Identifying adaptive genetic divergence among populations from genome scans
-
BEAUMONT, M. A., and D. J. BALDING, 2004 Identifying adaptive genetic divergence among populations from genome scans. Mol. Ecol. 13: 969-980.
-
(2004)
Mol. Ecol.
, vol.13
, pp. 969-980
-
-
Beaumont, M.A.1
Balding, D.J.2
-
7
-
-
0030467524
-
Evaluating loci for use in the genetic analysis of population structure
-
BEAUMONT, M. A., and R. A. NICHOLS, 1996 Evaluating loci for use in the genetic analysis of population structure. Proc. R. Soc. Lond. Ser. B Biol. Sci. 263: 1619-1626.
-
(1996)
Proc. R. Soc. Lond. Ser. B Biol. Sci.
, vol.263
, pp. 1619-1626
-
-
Beaumont, M.A.1
Nichols, R.A.2
-
8
-
-
0036964474
-
Approximate Bayesian computation in population genetics
-
BEAUMONT, M. A., W. ZHANG and D. J. BALDING, 2002 Approximate Bayesian computation in population genetics. Genetics 162: 2025-2035.
-
(2002)
Genetics
, vol.162
, pp. 2025-2035
-
-
Beaumont, M.A.1
Zhang, W.2
Balding, D.J.3
-
9
-
-
71249121103
-
Adaptive approximate Bayesian computation
-
BEAUMONT, M. A., J.-M. CORNUET, J.-M. MARIN and C. P. ROBERT, 2009 Adaptive approximate Bayesian computation. Biometrika 96: 983-990.
-
(2009)
Biometrika
, vol.96
, pp. 983-990
-
-
Beaumont, M.A.1
Cornuet, J.-M.2
Marin, J.-M.3
Robert, C.P.4
-
10
-
-
34948847222
-
A new approach to estimate parameters of speciation models with application to apes
-
BECQUET, C., and M. PRZEWORSKI, 2007 A new approach to estimate parameters of speciation models with application to apes. Genome Res. 17: 1505-1519.
-
(2007)
Genome Res.
, vol.17
, pp. 1505-1519
-
-
Becquet, C.1
Przeworski, M.2
-
11
-
-
34247638687
-
Genetic structure of chimpanzee populations
-
BECQUET, C., N. PATTERSON, A. C. STONE, M. PRZEWORSKI and D. REICH, 2007 Genetic structure of chimpanzee populations. PLoS Genet. 3: 10.
-
(2007)
PLoS Genet.
, vol.3
, pp. 10
-
-
Becquet, C.1
Patterson, N.2
Stone, A.C.3
Przeworski, M.4
Reich, D.5
-
12
-
-
73549122582
-
Non-linear regression models for approximate Bayesian computation
-
BLUM, M., and O. FRANÇOIS, 2010 Non-linear regression models for approximate Bayesian computation. Stat. Comput. 20: 63-73.
-
(2010)
Stat. Comput.
, vol.20
, pp. 63-73
-
-
Blum, M.1
François, O.2
-
13
-
-
0014024705
-
Population structure and human evolution
-
CAVALLI-SFORZA, L., 1966 Population structure and human evolution. Proc. R. Soc. Lond. Ser. B 164: 362-379.
-
(1966)
Proc. R. Soc. Lond. Ser. B
, vol.164
, pp. 362-379
-
-
Cavalli-Sforza, L.1
-
14
-
-
0031450133
-
The effects of local selection, balanced polymorphism and background selection on equilibrium patterns of genetic diversity in subdivided populations
-
CHARLESWORTH, B., M. NORDBORG and D. CHARLESWORTH, 1997 The effects of local selection, balanced polymorphism and background selection on equilibrium patterns of genetic diversity in subdivided populations. Genet. Res. 70: 155-174.
-
(1997)
Genet. Res.
, vol.70
, pp. 155-174
-
-
Charlesworth, B.1
Nordborg, M.2
Charlesworth, D.3
-
16
-
-
70349506039
-
Detecting loci under selection in a hierarchically structured population
-
EXCOFFIER, L., T. HOFER and M. FOLL, 2009 Detecting loci under selection in a hierarchically structured population. Heredity 103: 285-298.
-
(2009)
Heredity
, vol.103
, pp. 285-298
-
-
Excoffier, L.1
Hofer, T.2
Foll, M.3
-
17
-
-
36749047447
-
Statistical evaluation of alternative models of human evolution
-
FAGUNDES, N. J. R., N. RAY, M. BEAUMONT, S. NEUENSCHWANDER, F. M. SALZANO et al., 2007 Statistical evaluation of alternative models of human evolution. Proc. Natl. Acad. Sci. USA 104: 17614-17619.
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 17614-17619
-
-
Fagundes, N.J.R.1
Ray, N.2
Beaumont, M.3
Neuenschwander, S.4
Salzano, F.M.5
-
18
-
-
33646023117
-
An introduction to roc analysis
-
FAWCETT, T., 2006 An introduction to roc analysis. Pattern Recognit. Lett. 27: 882-891.
-
(2006)
Pattern Recognit. Lett.
, vol.27
, pp. 882-891
-
-
Fawcett, T.1
-
19
-
-
58149347836
-
A genome-scan method to identify selected loci appropriate for both dominant and codominant markers: A Bayesian perspective
-
FOLL, M., and O. GAGGIOTTI, 2008 A genome-scan method to identify selected loci appropriate for both dominant and codominant markers: a Bayesian perspective. Genetics 180: 977-993.
-
(2008)
Genetics
, vol.180
, pp. 977-993
-
-
Foll, M.1
Gaggiotti, O.2
-
20
-
-
84867086419
-
Prior distributions for variance parameters in hierarchical models
-
GELMAN, A., 2006 Prior distributions for variance parameters in hierarchical models. Bayesian Anal. 1: 515-533.
-
(2006)
Bayesian Anal.
, vol.1
, pp. 515-533
-
-
Gelman, A.1
-
22
-
-
68949216801
-
A Bayesian hierarchical model for analysis of single-nucleotide polymorphisms diversity in multilocus, multipopulation samples
-
GUO, F., D. K. DEY and K. E. HOLSINGER, 2009 A Bayesian hierarchical model for analysis of single-nucleotide polymorphisms diversity in multilocus, multipopulation samples. J. Am. Stat. Assoc. 104: 142-154.
-
(2009)
J. Am. Stat. Assoc.
, vol.104
, pp. 142-154
-
-
Guo, F.1
Dey, D.K.2
Holsinger, K.E.3
-
23
-
-
20444406878
-
Bayesian estimation of recent migration rates after a spatial expansion
-
HAMILTON, G., M. CURRAT, N. RAY, G. HECKEL, M. BEAUMONT et al., 2005 Bayesian estimation of recent migration rates after a spatial expansion. Genetics 170: 409-417.
-
(2005)
Genetics
, vol.170
, pp. 409-417
-
-
Hamilton, G.1
Currat, M.2
Ray, N.3
Heckel, G.4
Beaumont, M.5
-
24
-
-
58149314233
-
Testing comparative phylogeographic models of marine vicariance and dispersal using a hierarchical Bayesian approach
-
HICKERSON, M. J., and C. P. MEYER, 2008 Testing comparative phylogeographic models of marine vicariance and dispersal using a hierarchical Bayesian approach. BMC Evol. Biol. 8: 322.
-
(2008)
BMC Evol. Biol.
, vol.8
, pp. 322
-
-
Hickerson, M.J.1
Meyer, C.P.2
-
25
-
-
33645076038
-
Comparative phylogeographic summary statistics for testing simultaneous vicariance
-
HICKERSON, M. J., G. DOLMAN and C. MORITZ, 2006 Comparative phylogeographic summary statistics for testing simultaneous vicariance. Mol. Ecol. 15: 209-223.
-
(2006)
Mol. Ecol.
, vol.15
, pp. 209-223
-
-
Hickerson, M.J.1
Dolman, G.2
Moritz, C.3
-
26
-
-
0036184745
-
Generating samples under a Wright-Fisher neutral model of genetic variation
-
HUDSON, R. R., 2002 Generating samples under a Wright-Fisher neutral model of genetic variation. Bioinformatics 18: 337-338.
-
(2002)
Bioinformatics
, vol.18
, pp. 337-338
-
-
Hudson, R.R.1
-
27
-
-
51449104123
-
Approximately sufficient statistics and Bayesian computation
-
Article 26
-
JOYCE, P., and P. MARJORAM, 2008 Approximately sufficient statistics and Bayesian computation. Stat. Appl. Genet. Mol. Biol. 7:Article 26.
-
(2008)
Stat. Appl. Genet. Mol. Biol.
, vol.7
-
-
Joyce, P.1
Marjoram, P.2
-
28
-
-
0024372736
-
The "hitch-hiking effect" revisited
-
KAPLAN, N. L., R. R. HUDSON and C. H. LANGLEY, 1989 The "hitch-hiking effect" revisited. Genetics 123: 887-899.
-
(1989)
Genetics
, vol.123
, pp. 887-899
-
-
Kaplan, N.L.1
Hudson, R.R.2
Langley, C.H.3
-
29
-
-
0002118092
-
Determination of the centre of dispersion and degree of accuracy for a limited number of observation
-
KOLMOGOROV, A. N., 1942 Determination of the centre of dispersion and degree of accuracy for a limited number of observation. Izv. Akad. Nauk. USSR Ser. Mat. 6: 3-32.
-
(1942)
Izv. Akad. Nauk. USSR Ser. Mat.
, vol.6
, pp. 3-32
-
-
Kolmogorov, A.N.1
-
30
-
-
7244221627
-
Simcoal 2.0: A program to simulate genomic diversity over large recombining regions in a subdivided population with a complex history
-
LAVAL, G., and L. EXCOFFIER, 2004 Simcoal 2.0: a program to simulate genomic diversity over large recombining regions in a subdivided population with a complex history. Bioinformatics 20: 2485-2487.
-
(2004)
Bioinformatics
, vol.20
, pp. 2485-2487
-
-
Laval, G.1
Excoffier, L.2
-
31
-
-
0015879546
-
Distribution of gene frequency as a test of the theory of the selective neutrality of polymorphisms
-
LEWONTIN, R., and J. KRAKAUER, 1973 Distribution of gene frequency as a test of the theory of the selective neutrality of polymorphisms. Genetics 74: 175-195.
-
(1973)
Genetics
, vol.74
, pp. 175-195
-
-
Lewontin, R.1
Krakauer, J.2
-
32
-
-
0030372807
-
Local likelihood density estimation
-
LOADER, C. R., 1996 Local likelihood density estimation. Ann. Stat. 24: 1602-1618.
-
(1996)
Ann. Stat.
, vol.24
, pp. 1602-1618
-
-
Loader, C.R.1
-
33
-
-
0346734143
-
Markov chain Monte Carlo without likelihoods
-
MARJORAM, P., J. MOLITOR, V. PLAGNOL and S. TAVARÉ, 2003 Markov chain Monte Carlo without likelihoods. Proc. Natl. Acad. Sci. USA 100: 15324-15328.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 15324-15328
-
-
Marjoram, P.1
Molitor, J.2
Plagnol, V.3
Tavaré, S.4
-
34
-
-
33750964658
-
Scanning the human genome for signals of selection
-
MCVEAN, G., and C. C. A. SPENCER, 2006 Scanning the human genome for signals of selection. Curr. Opin. Genet. Dev. 16: 624-629.
-
(2006)
Curr. Opin. Genet. Dev.
, vol.16
, pp. 624-629
-
-
Mcvean, G.1
Spencer, C.C.A.2
-
35
-
-
33846829987
-
The pls package: Principal component and partial least squares regression in R
-
MEVIK, B. H., and R. WEHRENS, 2007 The pls package: principal component and partial least squares regression in R. J. Stat. Softw. 18: 1-24.
-
(2007)
J. Stat. Softw.
, vol.18
, pp. 1-24
-
-
Mevik, B.H.1
Wehrens, R.2
-
36
-
-
0020770986
-
The effect on neutral gene flow of selection at a linked locus
-
PETRY, D., 1983 The effect on neutral gene flow of selection at a linked locus. Theor. Popul. Biol. 23: 300-313.
-
(1983)
Theor. Popul. Biol.
, vol.23
, pp. 300-313
-
-
Petry, D.1
-
37
-
-
0032735986
-
Population growth of human Y chromosomes: A study of Y chromosome microsatellites
-
PRITCHARD, J. K., M. T. SEIELSTAD, A. PEREZ-LEZAUN and M. W. FELDMAN, 1999 Population growth of human Y chromosomes: a study of Y chromosome microsatellites. Mol. Biol. Evol. 16: 1791-1798.
-
(1999)
Mol. Biol. Evol.
, vol.16
, pp. 1791-1798
-
-
Pritchard, J.K.1
Seielstad, M.T.2
Perez-Lezaun, A.3
Feldman, M.W.4
-
38
-
-
14744280512
-
Geography predicts neutral genetic diversity of human populations
-
PRUGNOLLE, F., A. MANICA and F. BALLOUX, 2005 Geography predicts neutral genetic diversity of human populations. Curr. Biol. 15: R159-R160.
-
(2005)
Curr. Biol.
, vol.15
-
-
Prugnolle, F.1
Manica, A.2
Balloux, F.3
-
41
-
-
0030928378
-
Seq-gen: An application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees
-
RAMBAUT, A., and N. GRASSLY, 1997 Seq-gen: an application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees. Comput. Appl. Biosci. 13: 235-238.
-
(1997)
Comput. Appl. Biosci.
, vol.13
, pp. 235-238
-
-
Rambaut, A.1
Grassly, N.2
-
42
-
-
0030005966
-
Estimating gene flow in island populations
-
RANNALA, B., and J. A. HARTIGAN, 1996 Estimating gene flow in island populations. Genet. Res. 67: 147-158.
-
(1996)
Genet. Res.
, vol.67
, pp. 147-158
-
-
Rannala, B.1
Hartigan, J.A.2
-
43
-
-
67649819681
-
Model criticism based on likelihood-free inference, with an application to protein network evolution
-
RATMANN, O., C. ANDRIEU, C. WIUF and S. RICHARDSON, 2009 Model criticism based on likelihood-free inference, with an application to protein network evolution. Proc. Natl. Acad. Sci. USA 106: 10576-10581.
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 10576-10581
-
-
Ratmann, O.1
Andrieu, C.2
Wiuf, C.3
Richardson, S.4
-
44
-
-
45149108400
-
Bayesian variable selection for detecting adaptive genomic differences among populations
-
RIEBLER, A., L. HELD and W. STEPHAN, 2008 Bayesian variable selection for detecting adaptive genomic differences among populations. Genetics 178: 1817-1829.
-
(2008)
Genetics
, vol.178
, pp. 1817-1829
-
-
Riebler, A.1
Held, L.2
Stephan, W.3
-
45
-
-
0029983280
-
Equilibrium values of measures of population subdivision for stepwise mutation processes
-
ROUSSET, F., 1996 Equilibrium values of measures of population subdivision for stepwise mutation processes. Genetics 142: 1357-1362.
-
(1996)
Genetics
, vol.142
, pp. 1357-1362
-
-
Rousset, F.1
-
46
-
-
35349012592
-
Genome-wide detection and characterization of positive selection in human populations
-
SABETI, P. C., P. VARILLY, B. FRY, J. LOHMUELLER, E. HOSTETTER et al., 2007 Genome-wide detection and characterization of positive selection in human populations. Nature 449: 913-918.
-
(2007)
Nature
, vol.449
, pp. 913-918
-
-
Sabeti, P.C.1
Varilly, P.2
Fry, B.3
Lohmueller, J.4
Hostetter, E.5
-
47
-
-
27544491192
-
ROCR: Visualizing classifier performance in R
-
SING, T., O. SANDER, N. BEERENWINKEL and T. LENGAUER, 2005 ROCR: visualizing classifier performance in R. Bioinformatics 21: 3940-3941.
-
(2005)
Bioinformatics
, vol.21
, pp. 3940-3941
-
-
Sing, T.1
Sander, O.2
Beerenwinkel, N.3
Lengauer, T.4
-
49
-
-
0028816747
-
A measure of population subdivision based on microsatellite allele frequencies
-
SLATKIN, M., 1995 A measure of population subdivision based on microsatellite allele frequencies. Genetics 139: 457-462.
-
(1995)
Genetics
, vol.139
, pp. 457-462
-
-
Slatkin, M.1
-
50
-
-
67650327255
-
Approximate Bayesian computation without summary statistics: The case of admixture
-
SOUSA, V. C., M. FRITZ, M. A. BEAUMONT and L. CHIKHI, 2009 Approximate Bayesian computation without summary statistics: the case of admixture. Genetics 181: 1507-1519.
-
(2009)
Genetics
, vol.181
, pp. 1507-1519
-
-
Sousa, V.C.1
Fritz, M.2
Beaumont, M.A.3
Chikhi, L.4
-
51
-
-
4644333804
-
Selsim: A program to simulate population genetic data with natural selection and recombination
-
SPENCER, C. C. A., and G. COOP, 2004 Selsim: a program to simulate population genetic data with natural selection and recombination. Bioinformatics 20: 3673-3675.
-
(2004)
Bioinformatics
, vol.20
, pp. 3673-3675
-
-
Spencer, C.C.A.1
Coop, G.2
-
52
-
-
0036006020
-
Testing for genetic evidence of population expansion and contraction: An empirical analysis of microsatellite DNA variation using a hierarchical Bayesian model
-
STORZ, J. F., and M. A. BEAUMONT, 2002 Testing for genetic evidence of population expansion and contraction: an empirical analysis of microsatellite DNA variation using a hierarchical Bayesian model. Evolution 56: 154-166.
-
(2002)
Evolution
, vol.56
, pp. 154-166
-
-
Storz, J.F.1
Beaumont, M.A.2
-
53
-
-
33744815615
-
How reliable are empirical genomic scans for selective sweeps?
-
TESHIMA, K. M., G. COOP and M. PRZEWORSKI, 2006 How reliable are empirical genomic scans for selective sweeps? Genome Res. 16: 702-712.
-
(2006)
Genome Res.
, vol.16
, pp. 702-712
-
-
Teshima, K.M.1
Coop, G.2
Przeworski, M.3
-
54
-
-
58149142997
-
Approximate Bayesian computation scheme for parameter inference and model selection in dynamical systems
-
TONI, T., D. WELCH, N. STRELKOVA, A. IPSEN and M. STUMPF, 2009 Approximate Bayesian computation scheme for parameter inference and model selection in dynamical systems. J. R. Soc. Interface 6: 187-202.
-
(2009)
J. R. Soc. Interface
, vol.6
, pp. 187-202
-
-
Toni, T.1
Welch, D.2
Strelkova, N.3
Ipsen, A.4
Stumpf, M.5
-
55
-
-
0034856602
-
Interpretation of variation across marker loci as evidence of selection
-
VITALIS, R., K. DAWSON and P. BOURSOT, 2001 Interpretation of variation across marker loci as evidence of selection. Genetics 158: 1811-1823.
-
(2001)
Genetics
, vol.158
, pp. 1811-1823
-
-
Vitalis, R.1
Dawson, K.2
Boursot, P.3
-
56
-
-
0032047371
-
Segregating sites in Wright's island model
-
WAKELEY, J., 1998 Segregating sites in Wright's island model. Theor. Popul. Biol. 53: 166-174.
-
(1998)
Theor. Popul. Biol.
, vol.53
, pp. 166-174
-
-
Wakeley, J.1
-
57
-
-
70350136774
-
Efficient approximate Bayesian computation coupled with Markov chain Monte Carlo without likelihood
-
WEGMANN, D., C. LEUENBERGER and L. EXCOFFIER, 2009 Efficient approximate Bayesian computation coupled with Markov chain Monte Carlo without likelihood. Genetics 182: 1207-1218.
-
(2009)
Genetics
, vol.182
, pp. 1207-1218
-
-
Wegmann, D.1
Leuenberger, C.2
Excoffier, L.3
-
58
-
-
0021566877
-
Estimating f-statistics for the analysis of population structure
-
WEIR, B. S., and C. COCKERHAM, 1984 Estimating f-statistics for the analysis of population structure. Evolution 38: 1358-1370.
-
(1984)
Evolution
, vol.38
, pp. 1358-1370
-
-
Weir, B.S.1
Cockerham, C.2
-
59
-
-
0036957370
-
Estimating f-statistics
-
WEIR, B. S., and W. G. HILL, 2002 Estimating f-statistics. Annu. Rev. Genet. 36: 721-750.
-
(2002)
Annu. Rev. Genet.
, vol.36
, pp. 721-750
-
-
Weir, B.S.1
Hill, W.G.2
-
60
-
-
27544501017
-
Measures of human population structure show heterogeneity among genomic regions
-
WEIR, B. S., L. R. CARDON, A. D. ANDERSON, D. M. NIELSEN and W. G. HILL, 2005 Measures of human population structure show heterogeneity among genomic regions. Genome Res. 15: 1468-1476.
-
(2005)
Genome Res.
, vol.15
, pp. 1468-1476
-
-
Weir, B.S.1
Cardon, L.R.2
Anderson, A.D.3
Nielsen, D.M.4
Hill, W.G.5
-
61
-
-
0001771498
-
Evolution in Mendelian populations
-
WRIGHT, S., 1931 Evolution in Mendelian populations. Genetics 16: 97-159.
-
(1931)
Genetics
, vol.16
, pp. 97-159
-
-
Wright, S.1
|