메뉴 건너뛰기




Volumn 108, Issue 37, 2011, Pages 15112-15117

Lack of confidence in approximate Bayesian computation model choice

Author keywords

Bayes factor; Bayesian model choice; Consistent tests; Likelihood free methods; Sufficient statistics

Indexed keywords

ALGORITHM; APPROXIMATE BAYESIAN COMPUTATION; ARTICLE; BAYES THEOREM; COMPUTER MODEL; COMPUTER PROGRAM; DECISION MAKING; PHYLOGENY; POPULATION GENETICS; PRIORITY JOURNAL; SIMULATION; STATISTICAL ANALYSIS;

EID: 80053069153     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1102900108     Document Type: Article
Times cited : (258)

References (48)
  • 1
    • 0031014291 scopus 로고    scopus 로고
    • Inferring coalescence times from DNA sequence data
    • Tavaré S, Balding D, Griffith R, Donnelly P (1997) Inferring coalescence times from DNA sequence data. Genetics 145:505-518. (Pubitemid 27068401)
    • (1997) Genetics , vol.145 , Issue.2 , pp. 505-518
    • Tavare, S.1    Balding, D.J.2    Griffiths, R.C.3    Donnelly, P.4
  • 2
    • 0036964474 scopus 로고    scopus 로고
    • Approximate Bayesian computation in population genetics
    • Beaumont M, Zhang W, Balding D (2002) Approximate Bayesian computation in population genetics. Genetics 162:2025-2035. (Pubitemid 36114682)
    • (2002) Genetics , vol.162 , Issue.4 , pp. 2025-2035
    • Beaumont, M.A.1    Zhang, W.2    Balding, D.J.3
  • 3
    • 56649113038 scopus 로고    scopus 로고
    • Inferring population history with DIYABC: A user-friendly approach to Approximate Bayesian Computation
    • Cornuet JM, et al. (2008) Inferring population history with DIYABC: A user-friendly approach to Approximate Bayesian Computation. Bioinformatics 24:2713-2719.
    • (2008) Bioinformatics , vol.24 , pp. 2713-2719
    • Cornuet, J.M.1
  • 5
    • 0032735986 scopus 로고    scopus 로고
    • Population growth of human Y chromosomes: A study of Y chromosome microsatellites
    • Pritchard J, Seielstad M, Perez-Lezaun A, Feldman M (1999) Population growth of human Y chromosomes: A study of Y chromosome microsatellites. Mol Biol Evol 16:1791-1798.
    • (1999) Mol Biol e , vol.16 , pp. 1791-1798
    • Pritchard, J.1    Seielstad, M.2    Perez-Lezaun, A.3    Feldman, M.4
  • 6
    • 78149388939 scopus 로고    scopus 로고
    • Approximate Bayesian computation in evolution and ecology
    • Beaumont M (2010) Approximate Bayesian computation in evolution and ecology. Annu Rev Ecol Evol Syst 41:379-406.
    • (2010) Annu Rev Ecol Evol Syst , vol.41 , pp. 379-406
    • Beaumont, M.1
  • 7
    • 78049496426 scopus 로고    scopus 로고
    • ABC: A useful Bayesian tool for the analysis of population data
    • Lopes J, BeaumontM(2010) ABC: A useful Bayesian tool for the analysis of population data. Infect Genet Evol 10:825-832.
    • (2010) Infect Genet e , vol.10 , pp. 825-832
    • Lopes, J.1    Beaumont, M.2
  • 9
    • 67649819681 scopus 로고    scopus 로고
    • Model criticism based on likelihood- Free inference, with an application to protein network evolution
    • Ratmann O, Andrieu C, Wiujf C, Richardson S (2009) Model criticism based on likelihood- free inference, with an application to protein network evolution. Proc Natl Acad Sci USA 106:1-6.
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 1-6
    • Ratmann, O.1    Andrieu, C.2    Wiujf, C.3    Richardson, S.4
  • 10
    • 58249121701 scopus 로고    scopus 로고
    • Statistical hypothesis testing in intraspecific phylogeography: Nested clade phylogeographical analysis vs approximate Bayesian computation
    • Templeton A (2009) Statistical hypothesis testing in intraspecific phylogeography: Nested clade phylogeographical analysis vs approximate Bayesian computation. Mol Ecol 18:319-331.
    • (2009) Mol Ecol , vol.18 , pp. 319-331
    • Templeton, A.1
  • 11
    • 77950899209 scopus 로고    scopus 로고
    • Coherent and incoherent inference in phylogeography and human evolution
    • Templeton A (2010) Coherent and incoherent inference in phylogeography and human evolution. Proc Natl Acad Sci USA 107:6376-6381.
    • (2010) Proc Natl Acad Sci USA , vol.107 , pp. 6376-6381
    • Templeton, A.1
  • 12
    • 74549201612 scopus 로고    scopus 로고
    • In defense of model-based inference in phylogeography
    • Beaumont M, et al. (2010) In defense of model-based inference in phylogeography. Mol Ecol 19:436-446.
    • (2010) Mol Ecol , vol.19 , pp. 436-446
    • Beaumont, M.1
  • 16
  • 17
    • 51449104123 scopus 로고    scopus 로고
    • Approximately sufficient statistics and Bayesian computation
    • Joyce P, Marjoram P (2008) Approximately sufficient statistics and Bayesian computation. Stat Appl Genet Mol Biol 7:article 26.
    • (2008) Stat Appl Genet Mol Biol , vol.7 , pp. 26
    • Joyce, P.1    Marjoram, P.2
  • 18
    • 77957728670 scopus 로고    scopus 로고
    • On optimal selection of summary statistics for approximate Bayesian computation
    • Nunes MA, Balding DJ (2010) On optimal selection of summary statistics for approximate Bayesian computation. Stat Appl Genet Mol Biol 9:article 34.
    • (2010) Stat Appl Genet Mol Biol , vol.9 , pp. 34
    • Nunes, M.A.1    Balding, D.J.2
  • 19
  • 20
    • 5344241252 scopus 로고    scopus 로고
    • Genetic analysis of complex demographic scenarios: Spatially expanding populations of the cane toad, Bufo marinus
    • Estoup A, Beaumont M, Sennedot F, Moritz C, Cornuet J (2004) Genetic analysis of complex demographic scenarios: Spatially expanding populations of the cane toad, Bufo Marinus. Evolution 58:2021-2036. (Pubitemid 39348503)
    • (2004) Evolution , vol.58 , Issue.9 , pp. 2021-2036
    • Estoup, A.1    Beaumont, M.2    Sennedot, F.3    Moritz, C.4    Cornuet, J.-M.5
  • 23
    • 79953072678 scopus 로고    scopus 로고
    • Experiments with the site frequency spectrum
    • Sainudiin R, et al. (2011) Experiments with the site frequency spectrum. Bull Math Biol 73:829-872.
    • (2011) Bull Math Biol , vol.73 , pp. 829-872
    • Sainudiin, R.1
  • 26
    • 58149142997 scopus 로고    scopus 로고
    • Approximate Bayesian computation scheme for parameter inference and model selection in dynamical systems
    • Toni T, Welch D, Strelkowa N, Ipsen A, Stumpf M (2009) Approximate Bayesian computation scheme for parameter inference and model selection in dynamical systems. J R Soc Interf 6:187-202.
    • (2009) J R Soc Interf , vol.6 , pp. 187-202
    • Toni, T.1    Welch, D.2    Strelkowa, N.3    Ipsen, A.4    Stumpf, M.5
  • 27
    • 60549090048 scopus 로고    scopus 로고
    • Comparing models on the genealogical relationships among Neandertal, Cro-Magnoid and modern Europeans by serial coalescent simulations
    • Belle E, Benazzo A, Ghirotto S, Colonna V, Barbujani G (2008) Comparing models on the genealogical relationships among Neandertal, Cro-Magnoid and modern Europeans by serial coalescent simulations. Heredity 102:218-225.
    • (2008) Heredity , vol.102 , pp. 218-225
    • Belle, E.1    Benazzo, A.2    Ghirotto, S.3    Colonna, V.4    Barbujani, G.5
  • 28
    • 77955493069 scopus 로고    scopus 로고
    • Inference on population history and model checking using DNA sequence and microsatellite data with the software DIYABC (v10)
    • Cornuet JM, Ravigné V, Estoup A (2010) Inference on population history and model checking using DNA sequence and microsatellite data with the software DIYABC (v10). BMC Bioinformatics 11:401.
    • (2010) BMC Bioinformatics , vol.11 , pp. 401
    • Cornuet, J.M.1    Ravigné, V.2    Estoup, A.3
  • 30
    • 77952303302 scopus 로고    scopus 로고
    • Inferring genealogical processes from patterns of bronze-age and modern DNA variation in Sardinia
    • Ghirotto S, et al. (2010) Inferring genealogical processes from patterns of bronze-age and modern DNA variation in Sardinia. Mol Biol Evol 27:875-886.
    • (2010) Mol Biol e , vol.27 , pp. 875-886
    • Ghirotto, S.1
  • 31
    • 73349141378 scopus 로고    scopus 로고
    • Inferring introduction routes of invasive species using approximate Bayesian computation on microsatellite data
    • Guillemaud T, Beaumont M, Ciosi M, Cornuet JM, Estoup A (2009) Inferring introduction routes of invasive species using approximate Bayesian computation on microsatellite data. Heredity 104:88-99.
    • (2009) Heredity , vol.104 , pp. 88-99
    • Guillemaud, T.1    Beaumont, M.2    Ciosi, M.3    Cornuet, J.M.4    Estoup, A.5
  • 32
    • 74249110200 scopus 로고    scopus 로고
    • Bayesian computation and model selection without likelihoods
    • Leuenberger C, Wegmann D (2010) Bayesian computation and model selection without likelihoods. Genetics 184:243-252.
    • (2010) Genetics , vol.184 , pp. 243-252
    • Leuenberger, C.1    Wegmann, D.2
  • 33
    • 66149116064 scopus 로고    scopus 로고
    • Inferring the demographic history of African farmers and Pygmy hunter-gatherers using a multilocus resequencing data set
    • Patin E, et al. (2009) Inferring the demographic history of African farmers and Pygmy hunter-gatherers using a multilocus resequencing data set. PLoS Genetics 5:e1000448.
    • (2009) PLoS Genetics , vol.5
    • Patin, E.1
  • 34
    • 62849103887 scopus 로고    scopus 로고
    • Using phylochronology to reveal cryptic population histories: Review and synthesis of 29 ancient DNA studies
    • Ramakrishnan U, Hadly E (2009) Using phylochronology to reveal cryptic population histories: Review and synthesis of 29 ancient DNA studies. Mol Ecol 18:1310-1330.
    • (2009) Mol Ecol , vol.18 , pp. 1310-1330
    • Ramakrishnan, U.1    Hadly, E.2
  • 35
    • 60349093847 scopus 로고    scopus 로고
    • Origins and genetic diversity of Pygmy hunter-gatherers from western central Africa
    • Verdu P, et al. (2009) Origins and genetic diversity of Pygmy hunter-gatherers from western central Africa. Curr Biol 19:312-318.
    • (2009) Curr Biol , vol.19 , pp. 312-318
    • Verdu, P.1
  • 36
    • 77952816206 scopus 로고    scopus 로고
    • Bayesian inference of the demographic history of chimpanzees
    • Wegmann D, Excoffier L (2010) Bayesian inference of the demographic history of chimpanzees. Mol Biol Evol 27:1425-1435.
    • (2010) Mol Biol e , vol.27 , pp. 1425-1435
    • Wegmann, D.1    Excoffier, L.2
  • 38
    • 70349978987 scopus 로고    scopus 로고
    • PopABC: A program to infer historical demographic parameters
    • Lopes JS, Balding D, Beaumont MA (2009) PopABC: A program to infer historical demographic parameters. Bioinformatics 25:2747-2749.
    • (2009) Bioinformatics , vol.25 , pp. 2747-2749
    • Lopes, J.S.1    Balding, D.2    Beaumont, M.A.3
  • 39
    • 75249088572 scopus 로고    scopus 로고
    • Simulation-based model selection for dynamical systems in systems and population biology
    • Toni T, Stumpf M (2010) Simulation-based model selection for dynamical systems in systems and population biology. Bioinformatics 26:104-110.
    • (2010) Bioinformatics , vol.26 , pp. 104-110
    • Toni, T.1    Stumpf, M.2
  • 43
    • 67650327255 scopus 로고    scopus 로고
    • Approximate Bayesian computation without summary statistics: The case of admixture
    • Sousa V, Fritz M, Beaumont M, Chikhi L (2009) Approximate Bayesian computation without summary statistics: the case of admixture. Genetics 181:1507-1519.
    • (2009) Genetics , vol.181 , pp. 1507-1519
    • Sousa, V.1    Fritz, M.2    Beaumont, M.3    Chikhi, L.4
  • 46
    • 0037348820 scopus 로고    scopus 로고
    • Bayesian inferences on the recent island colonization history by the bird Zosterops lateralis lateralis
    • DOI 10.1046/j.1365-294X.2003.01761.x
    • Estoup A, Clegg S (2003) Bayesian inferences on the recent island colonization history by the bird Zosterops lateralis lateralis. Mol Ecol 12:657-674. (Pubitemid 36380425)
    • (2003) Molecular Ecology , vol.12 , Issue.3 , pp. 657-674
    • Estoup, A.1    Clegg, S.M.2
  • 47
    • 77955481149 scopus 로고    scopus 로고
    • Bridgehead effect in the worldwide invasion of the biocontrol Harlequin Ladybird
    • Lombaert E, et al. (2010) Bridgehead effect in the worldwide invasion of the biocontrol Harlequin Ladybird. PloS ONE 5:e9743.
    • (2010) PloS ONE , vol.5
    • Lombaert, E.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.