-
1
-
-
0033911330
-
An integrated framework for the inference of viral population history from reconstructed genealogies
-
Pybus OG, Rambaut A, Harvey PH, (2000) An integrated framework for the inference of viral population history from reconstructed genealogies. Genetics 155: 1429-1437.
-
(2000)
Genetics
, vol.155
, pp. 1429-1437
-
-
Pybus, O.G.1
Rambaut, A.2
Harvey, P.H.3
-
2
-
-
17744381574
-
Bayesian coalescent inference of past population dynamics from molecular sequences
-
Drummond AJ, Rambaut A, Shapiro B, Pybus OG, (2005) Bayesian coalescent inference of past population dynamics from molecular sequences. Mol Biol Evol 22: 1185-1192.
-
(2005)
Mol Biol Evol
, vol.22
, pp. 1185-1192
-
-
Drummond, A.J.1
Rambaut, A.2
Shapiro, B.3
Pybus, O.G.4
-
3
-
-
38949133420
-
mtDNA variation predicts population size in humans and reveals a major southern Asian chapter in human prehistory
-
Atkinson QD, Gray RD, Drummond AJ, (2008) mtDNA variation predicts population size in humans and reveals a major southern Asian chapter in human prehistory. Mol Biol Evol 25: 468-474.
-
(2008)
Mol Biol Evol
, vol.25
, pp. 468-474
-
-
Atkinson, Q.D.1
Gray, R.D.2
Drummond, A.J.3
-
4
-
-
52449099171
-
A reevaluation of the native American mtDNA genome diversity and its bearing on the models of early colonization of Beringia
-
doi: 10.1371/journal.pone.0003157
-
Fagundes NJR, Kanitz R, Bonatto SL, (2008) A reevaluation of the native American mtDNA genome diversity and its bearing on the models of early colonization of Beringia. PLoS One 3(9): e3157 doi:10.1371/journal.pone.0003157.
-
(2008)
PLoS One
, vol.3
, Issue.9
-
-
Fagundes, N.J.R.1
Kanitz, R.2
Bonatto, S.L.3
-
5
-
-
79955049280
-
Rapid, global demographic expansions after the origins of agriculture
-
Gignoux CR, Henn BM, Mountain JL, (2011) Rapid, global demographic expansions after the origins of agriculture. Proc Natl Acad Sci USA 108: 6044-6049.
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, pp. 6044-6049
-
-
Gignoux, C.R.1
Henn, B.M.2
Mountain, J.L.3
-
6
-
-
9444220256
-
Rise and fall of the Beringian steppe bison
-
Shapiro B, Drummond AJ, Rambaut A, Wilson MC, Matheus PE, et al. (2004) Rise and fall of the Beringian steppe bison. Science 306: 1561-1565.
-
(2004)
Science
, vol.306
, pp. 1561-1565
-
-
Shapiro, B.1
Drummond, A.J.2
Rambaut, A.3
Wilson, M.C.4
Matheus, P.E.5
-
7
-
-
77950437916
-
Ancient DNA analyses exclude humans as the driving force behind late Pleistocene musk ox (Ovibos moschatus) population dynamics
-
Campos P, Willerslev E, Sher A, Orlando L, Axelsson E, et al. (2010) Ancient DNA analyses exclude humans as the driving force behind late Pleistocene musk ox (Ovibos moschatus) population dynamics. Proc Natl Acad Sci USA 107: 5675-5680.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 5675-5680
-
-
Campos, P.1
Willerslev, E.2
Sher, A.3
Orlando, L.4
Axelsson, E.5
-
8
-
-
81555200041
-
Species-specific responses of Late Quaternary megafauna to climate and humans
-
Lorenzen ED, Nogués-Bravo D, Orlando L, Weinstock J, Binladen J, et al. (2011) Species-specific responses of Late Quaternary megafauna to climate and humans. Nature 479: 359-365.
-
(2011)
Nature
, vol.479
, pp. 359-365
-
-
Lorenzen, E.D.1
Nogués-Bravo, D.2
Orlando, L.3
Weinstock, J.4
Binladen, J.5
-
9
-
-
67849119548
-
The impact of sampling schemes on the site frequency spectrum in nonequilibrium subdivided populations
-
Städler T, Haubold B, Merino C, Stephan W, Pfaffelhuber P, (2009) The impact of sampling schemes on the site frequency spectrum in nonequilibrium subdivided populations. Genetics 182: 205-216.
-
(2009)
Genetics
, vol.182
, pp. 205-216
-
-
Städler, T.1
Haubold, B.2
Merino, C.3
Stephan, W.4
Pfaffelhuber, P.5
-
10
-
-
78951476873
-
The confounding effects of population structure, genetic diversity and the sampling scheme on the detection and quantification of population size changes
-
Chikhi L, Sousa VC, Luisi P, Goossens B, Beaumont MA, (2010) The confounding effects of population structure, genetic diversity and the sampling scheme on the detection and quantification of population size changes. Genetics 186: 983-995.
-
(2010)
Genetics
, vol.186
, pp. 983-995
-
-
Chikhi, L.1
Sousa, V.C.2
Luisi, P.3
Goossens, B.4
Beaumont, M.A.5
-
11
-
-
78149423210
-
Distinguishing between population bottleneck and population subdivision by a Bayesian model choice procedure
-
Peter MB, Wegmann D, Excoffier L, (2010) Distinguishing between population bottleneck and population subdivision by a Bayesian model choice procedure. Mol Ecol 19: 4648-4660.
-
(2010)
Mol Ecol
, vol.19
, pp. 4648-4660
-
-
Peter, M.B.1
Wegmann, D.2
Excoffier, L.3
-
12
-
-
60549111699
-
Bayesian inference of population size history from multiple loci
-
doi:10.1186/1471-2148-8-289
-
Heled J, Drummond AJ (2008) Bayesian inference of population size history from multiple loci. BMC Evol Biol 8:doi:10.1186/1471-2148-8-289.
-
(2008)
BMC Evol Biol
, vol.8
-
-
Heled, J.1
Drummond, A.J.2
-
13
-
-
79954569160
-
Skyline-plot methods for estimating demographic history from nucleotide sequences
-
Ho SYW, Shapiro B, (2011) Skyline-plot methods for estimating demographic history from nucleotide sequences. Mol Ecol Resour 11: 423-434.
-
(2011)
Mol Ecol Resour
, vol.11
, pp. 423-434
-
-
Ho, S.Y.W.1
Shapiro, B.2
-
14
-
-
0032736182
-
Non-equilibrium migration in human history
-
Wakeley J, (1999) Non-equilibrium migration in human history. Genetics 153: 1836-1871.
-
(1999)
Genetics
, vol.153
, pp. 1836-1871
-
-
Wakeley, J.1
-
15
-
-
2542443908
-
Recent developments in genetic data analysis: What can they tell us about human demographic history?
-
Beaumont MA, (2004) Recent developments in genetic data analysis: What can they tell us about human demographic history? Heredity 92: 365-379.
-
(2004)
Heredity
, vol.92
, pp. 365-379
-
-
Beaumont, M.A.1
-
16
-
-
61649119281
-
Statistical inferences in phylogeography
-
Nielsen R, Beaumont MA, (2009) Statistical inferences in phylogeography. Mol Ecol 18: 1034-1047.
-
(2009)
Mol Ecol
, vol.18
, pp. 1034-1047
-
-
Nielsen, R.1
Beaumont, M.A.2
-
17
-
-
0038650624
-
Coalescence in a metapopulation with recurrent local extinction and recolonization
-
Pannell JR, (2003) Coalescence in a metapopulation with recurrent local extinction and recolonization. Evolution 57: 949-961.
-
(2003)
Evolution
, vol.57
, pp. 949-961
-
-
Pannell, J.R.1
-
18
-
-
0032713236
-
Detecting population expansion and decline using microsatellites
-
Beaumont MA, (1999) Detecting population expansion and decline using microsatellites. Genetics 153: 2013-2029.
-
(1999)
Genetics
, vol.153
, pp. 2013-2029
-
-
Beaumont, M.A.1
-
19
-
-
84874328564
-
Pan-African genetic structure in the African buffalo (Syncerus caffer): Investigating intraspecific divergence. Accepted for publication
-
Smitz N, Berthouly C, Cornelis D, Heller R, Van Hooft WF, et al. (2013) Pan-African genetic structure in the African buffalo (Syncerus caffer): Investigating intraspecific divergence. Accepted for publication, PLoS One.
-
(2013)
PLoS One
-
-
Smitz, N.1
Berthouly, C.2
Cornelis, D.3
Heller, R.4
Van Hooft, W.F.5
-
20
-
-
55849123330
-
Mid-Holocene decline in African buffalos inferred from Bayesian coalescent-based analyses of microsatellites and mitochondrial DNA
-
Heller R, Lorenzen ED, Okello JBA, Masembe C, Siegismund HR, (2008) Mid-Holocene decline in African buffalos inferred from Bayesian coalescent-based analyses of microsatellites and mitochondrial DNA. Mol Ecol 17: 4845-4858.
-
(2008)
Mol Ecol
, vol.17
, pp. 4845-4858
-
-
Heller, R.1
Lorenzen, E.D.2
Okello, J.B.A.3
Masembe, C.4
Siegismund, H.R.5
-
21
-
-
84864399375
-
Cape buffalo mitogenomics reveals a Holocene shift in the African human-megafauna dynamics
-
Heller R, Brüniche-Olsen A, Siegismund HR, (2012) Cape buffalo mitogenomics reveals a Holocene shift in the African human-megafauna dynamics. Mol Ecol 21: 3947-3959.
-
(2012)
Mol Ecol
, vol.21
, pp. 3947-3959
-
-
Heller, R.1
Brüniche-Olsen, A.2
Siegismund, H.R.3
-
22
-
-
33646483919
-
Bayesian estimation of the timing and severity of a population bottleneck from ancient DNA
-
doi: 10.1371/journal.pgen.0020059
-
Chan YL, Anderson CNK, Hadly EA, (2006) Bayesian estimation of the timing and severity of a population bottleneck from ancient DNA. PLoS Genet 2(4): e59 doi:10.1371/journal.pgen.0020059.
-
(2006)
PLoS Genet
, vol.2
, Issue.4
-
-
Chan, Y.L.1
Anderson, C.N.K.2
Hadly, E.A.3
-
23
-
-
0036245438
-
Genealogical trees, coalescent history and the analysis of genetic polymorphisms
-
Rosenberg NA, Nordborg M, (2002) Genealogical trees, coalescent history and the analysis of genetic polymorphisms. Nature Reviews Genetics 3: 380-390.
-
(2002)
Nature Reviews Genetics
, vol.3
, pp. 380-390
-
-
Rosenberg, N.A.1
Nordborg, M.2
-
24
-
-
0026709389
-
Estimation of levels of gene flow from DNA sequence data
-
Hudson RR, Slatkin M, Maddison WP, (1992) Estimation of levels of gene flow from DNA sequence data. Genetics 132: 583-589.
-
(1992)
Genetics
, vol.132
, pp. 583-589
-
-
Hudson, R.R.1
Slatkin, M.2
Maddison, W.P.3
-
25
-
-
0033083450
-
Indirect measures of gene flow and migration: FST ≠ 1/(4Nm +1)
-
Whitlock MC, McCauley DE, (1999) Indirect measures of gene flow and migration: FST ≠ 1/(4Nm +1). Heredity 82: 117-25.
-
(1999)
Heredity
, vol.82
, pp. 117-125
-
-
Whitlock, M.C.1
McCauley, D.E.2
-
26
-
-
65649112683
-
-
Greenwood Village: Roberts and Company Publishers
-
Wakeley J (2009) Coalescent Theory. Greenwood Village: Roberts and Company Publishers.
-
(2009)
Coalescent Theory
-
-
Wakeley, J.1
-
27
-
-
0037227366
-
Intra-deme molecular diversity in spatially expanding populations
-
Ray N, Currat M, Excoffier L, (2003) Intra-deme molecular diversity in spatially expanding populations. Mol Biol Evol 29: 76-86.
-
(2003)
Mol Biol Evol
, vol.29
, pp. 76-86
-
-
Ray, N.1
Currat, M.2
Excoffier, L.3
-
29
-
-
15544374420
-
On the meaning and existence of an effective population size
-
Sjödin P, Kaj I, Krone SM, Lascoux M, Nordborg M, (2005) On the meaning and existence of an effective population size. Genetics 169: 1061-1070.
-
(2005)
Genetics
, vol.169
, pp. 1061-1070
-
-
Sjödin, P.1
Kaj, I.2
Krone, S.M.3
Lascoux, M.4
Nordborg, M.5
-
30
-
-
33645108873
-
LAMARC 2.0: maximum likelihood and Bayesian estimation of population parameters
-
Kuhner MK, (2006) LAMARC 2.0: maximum likelihood and Bayesian estimation of population parameters. Bioinformatics 22: 768-770.
-
(2006)
Bioinformatics
, vol.22
, pp. 768-770
-
-
Kuhner, M.K.1
-
31
-
-
33847253975
-
Integration within the Felsenstein equation for improved Markov chain Monte Carlo methods in population genetics
-
Hey J, Nielsen R, (2007) Integration within the Felsenstein equation for improved Markov chain Monte Carlo methods in population genetics. Proc Natl Acad Sci USA 104: 2785-2790.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 2785-2790
-
-
Hey, J.1
Nielsen, R.2
|