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Volumn 5, Issue 4, 2004, Pages 251-261

The bayesian revolution in genetics

Author keywords

[No Author keywords available]

Indexed keywords

BAYES THEOREM; CALCULATION; DATA ANALYSIS; GENE MAPPING; GENE SEQUENCE; GENETIC ANALYSIS; HUMAN; HUMAN GENETICS; MATHEMATICAL ANALYSIS; MONTE CARLO METHOD; PRIORITY JOURNAL; REVIEW; STATISTICAL ANALYSIS; STATISTICAL MODEL;

EID: 1842532350     PISSN: 14710056     EISSN: None     Source Type: Journal    
DOI: 10.1038/nrg1318     Document Type: Review
Times cited : (362)

References (110)
  • 1
    • 0033199777 scopus 로고    scopus 로고
    • Bayesian statistics in genetics: A guide for the uninitiated
    • Shoemaker, J. S., Painter, I. S. & Weir, B. S. Bayesian statistics in genetics: a guide for the uninitiated. Trends Genet. 15, 354-358 (1999).
    • (1999) Trends Genet. , vol.15 , pp. 354-358
    • Shoemaker, J.S.1    Painter, I.S.2    Weir, B.S.3
  • 3
    • 0000156374 scopus 로고
    • Phylogenetic analysis: Models and estimation procedures
    • Cavalli-Sforza, L. L. & Edwards, A. W. F. Phylogenetic analysis: models and estimation procedures. Evolution 32, 550-570 (1967).
    • (1967) Evolution , vol.32 , pp. 550-570
    • Cavalli-Sforza, L.L.1    Edwards, A.W.F.2
  • 4
    • 0015310384 scopus 로고
    • The sampling theory of selectively neutral alleles
    • Ewens, W. J. The sampling theory of selectively neutral alleles. Theor. Popul. Biol. 3, 87-112 (1972). The first use of a sampling distribution in population genetics. This paper anticipates modern approaches, such as the coalescent theory, that model the sampling distribution of chromosomes.
    • (1972) Theor. Popul. Biol. , vol.3 , pp. 87-112
    • Ewens, W.J.1
  • 6
    • 0020744702 scopus 로고
    • Properties of a neutral allele model with intragenic recombination
    • Hudson, R. R. Properties of a neutral allele model with intragenic recombination. Theor. Popul. Biol. 23, 183-201 (1983).
    • (1983) Theor. Popul. Biol. , vol.23 , pp. 183-201
    • Hudson, R.R.1
  • 7
    • 0026682501 scopus 로고
    • Estimating effective population size from samples of sequences: Inefficiency of pairwise and segregating sites as compared to phylogenetic estimates
    • Felsenstein, J. Estimating effective population size from samples of sequences: inefficiency of pairwise and segregating sites as compared to phylogenetic estimates. Genet. Res. 59, 139-147 (1992).
    • (1992) Genet. Res. , vol.59 , pp. 139-147
    • Felsenstein, J.1
  • 8
    • 84972539388 scopus 로고
    • Ancestral inference in population genetics
    • Griffiths, R. C. & Tavaré, S. Ancestral inference in population genetics. Statistical Sci. 9, 307-319 (1994).
    • (1994) Statistical Sci. , vol.9 , pp. 307-319
    • Griffiths, R.C.1    Tavaré, S.2
  • 9
    • 0033762150 scopus 로고    scopus 로고
    • The effect of rate variation on ancestral inference in the coalescent
    • Markovtsova, L., Marjoram, P. & Tavaré, S. The effect of rate variation on ancestral inference in the coalescent. Genetics 156, 1427-1436(2000).
    • (2000) Genetics , vol.156 , pp. 1427-1436
    • Markovtsova, L.1    Marjoram, P.2    Tavaré, S.3
  • 10
    • 0031014291 scopus 로고    scopus 로고
    • Inferring coalescence times from DNA sequence data
    • Tavaré, S., Balding D. J., Griffiths, R. C. & Donnelly, P. Inferring coalescence times from DNA sequence data. Genetics 145, 505-518 (1997).
    • (1997) Genetics , vol.145 , pp. 505-518
    • Tavaré, S.1    Balding, D.J.2    Griffiths, R.C.3    Donnelly, P.4
  • 11
    • 0031669749 scopus 로고    scopus 로고
    • Genealogical inference from microsatellite data
    • Wilson, I. J. & Balding, D. J. Genealogical inference from microsatellite data. Genetics 150, 499-510 (1998). An early paper that uses MCMC to carry out a fully Bayesian analysis of population-genetic data.
    • (1998) Genetics , vol.150 , pp. 499-510
    • Wilson, I.J.1    Balding, D.J.2
  • 12
    • 0035836728 scopus 로고    scopus 로고
    • Maximum likelihood estimation of a migration matrix and effective population sizes in n subpopulations by using a coalescent approach
    • Beerli, P. & Felsenstein, J. Maximum likelihood estimation of a migration matrix and effective population sizes in n subpopulations by using a coalescent approach. Proc. Natl Acad. Sci. USA 98, 4563-4568 (2001).
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 4563-4568
    • Beerli, P.1    Felsenstein, J.2
  • 13
    • 0034967295 scopus 로고    scopus 로고
    • Distinguishing migration from isolation: A Markov chain Monte Carlo approach
    • Nielsen, R. & Wakeley, J. Distinguishing migration from isolation: a Markov chain Monte Carlo approach. Genetics 158, 885-896 (2001).
    • (2001) Genetics , vol.158 , pp. 885-896
    • Nielsen, R.1    Wakeley, J.2
  • 14
    • 0035205317 scopus 로고    scopus 로고
    • The discovery of single-nucleotide polymorphisms and inferences about human demographic history
    • Wakeley, J., Nielsen, R., Liu-Cordero, S. N. & Ardlie, K. The discovery of single-nucleotide polymorphisms and inferences about human demographic history. Am. J. Hum. Genet. 69, 1332-1347 (2001).
    • (2001) Am. J. Hum. Genet. , vol.69 , pp. 1332-1347
    • Wakeley, J.1    Nielsen, R.2    Liu-Cordero, S.N.3    Ardlie, K.4
  • 15
    • 0036856317 scopus 로고    scopus 로고
    • Genetic evidence for long-term population decline in a savannah-dwelling primate: Inferences from a hierarchical Bayesian model
    • Storz, J. F., Beaumont, M. A. & Alberts, S. C. Genetic evidence for long-term population decline in a savannah-dwelling primate: inferences from a hierarchical Bayesian model. Mol. Biol. Evol. 19, 1981-1990 (2002).
    • (2002) Mol. Biol. Evol. , vol.19 , pp. 1981-1990
    • Storz, J.F.1    Beaumont, M.A.2    Alberts, S.C.3
  • 16
    • 0041817551 scopus 로고    scopus 로고
    • Bayes estimation of species divergence times and ancestral population sizes using DNA sequences from multiple loci
    • Rannala, B. & Yang, Z. Bayes estimation of species divergence times and ancestral population sizes using DNA sequences from multiple loci. Genetics 164, 1645-1656 (2003).
    • (2003) Genetics , vol.164 , pp. 1645-1656
    • Rannala, B.1    Yang, Z.2
  • 18
    • 0036964474 scopus 로고    scopus 로고
    • Approximate Bayesian computation in population genetics
    • Beaumont, M. A., Zhang, W., & Balding, D. J. Approximate Bayesian computation in population genetics. Genetics 162, 2025-2035 (2002).
    • (2002) Genetics , vol.162 , pp. 2025-2035
    • Beaumont, M.A.1    Zhang, W.2    Balding, D.J.3
  • 19
    • 0037503021 scopus 로고    scopus 로고
    • Inferences from DNA data: Population histories, evolutionary processes and forensic match probabilities
    • Wilson, I. J., Weale, M. E. & Balding, D. J. Inferences from DNA data: population histories, evolutionary processes and forensic match probabilities. J. Roy. Stat. Soc. A Sta. 166, 155-188 (2003).
    • (2003) J. Roy. Stat. Soc. A Sta. , vol.166 , pp. 155-188
    • Wilson, I.J.1    Weale, M.E.2    Balding, D.J.3
  • 21
    • 0032714352 scopus 로고    scopus 로고
    • Genomic control for association studies
    • Devlin, B. & Roeder, K. Genomic control for association studies. Biometrics 55, 997-1004 (1999).
    • (1999) Biometrics , vol.55 , pp. 997-1004
    • Devlin, B.1    Roeder, K.2
  • 22
    • 0033358548 scopus 로고    scopus 로고
    • Use of unlinked genetic markers to detect population stratification in association studies
    • Pritchard, J. K. & Rosenberg, N. A. Use of unlinked genetic markers to detect population stratification in association studies. Am. J. Hum. Genet. 65, 220-228 (1999).
    • (1999) Am. J. Hum. Genet. , vol.65 , pp. 220-228
    • Pritchard, J.K.1    Rosenberg, N.A.2
  • 24
    • 0035528928 scopus 로고    scopus 로고
    • Case-control studies of association in structured or admixed populations
    • Pritchard, J. K. & Donnelly, P. Case-control studies of association in structured or admixed populations. Theor. Popul. Biol. 80, 227-237 (2001).
    • (2001) Theor. Popul. Biol. , vol.80 , pp. 227-237
    • Pritchard, J.K.1    Donnelly, P.2
  • 25
    • 0032833648 scopus 로고    scopus 로고
    • Bioinvasions of the medfly Ceratitis capitata: Source estimation using DNA sequences at multiple intron loci
    • Davies, N., Villablanca, F. X. & Roderick, G. K. Bioinvasions of the medfly Ceratitis capitata: source estimation using DNA sequences at multiple intron loci. Genetics 153, 351-360 (1999).
    • (1999) Genetics , vol.153 , pp. 351-360
    • Davies, N.1    Villablanca, F.X.2    Roderick, G.K.3
  • 26
    • 0034752874 scopus 로고    scopus 로고
    • Microsatellite analysis of medfly bioinfestations in California
    • Bonizzoni, M. et al. Microsatellite analysis of medfly bioinfestations in California. Mol. Ecol. 10, 2515-2524 (2001).
    • (2001) Mol. Ecol. , vol.10 , pp. 2515-2524
    • Bonizzoni, M.1
  • 27
    • 0034118493 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data
    • Pritchard, J. K., Stephens, M. & Donnelly, P. Inference of population structure using multilocus genotype data. Genetics 155, 945-959 (2000). An influential paper in the development of Bayesian methods to study cryptic population structure. The program described in it, Structure, has been widely used in molecular ecology.
    • (2000) Genetics , vol.155 , pp. 945-959
    • Pritchard, J.K.1    Stephens, M.2    Donnelly, P.3
  • 28
    • 0034879445 scopus 로고    scopus 로고
    • A Bayesian approach to the identification of panmictic populations and the assignment of individuals
    • Dawson, K. J. & Belkhir, K. A Bayesian approach to the identification of panmictic populations and the assignment of individuals. Genet. Res. 78, 59-77 (2001).
    • (2001) Genet. Res. , vol.78 , pp. 59-77
    • Dawson, K.J.1    Belkhir, K.2
  • 30
    • 0037274702 scopus 로고    scopus 로고
    • Bayesian analysis of genetic differentiation between populations
    • Corander, J., Waldmann, P. & Sillanpaa, M. J. Bayesian analysis of genetic differentiation between populations. Genetics 163, 367-374 (2003).
    • (2003) Genetics , vol.163 , pp. 367-374
    • Corander, J.1    Waldmann, P.2    Sillanpaa, M.J.3
  • 31
    • 0037355101 scopus 로고    scopus 로고
    • Bayesian inference of recent migration rates using multilocus genotypes
    • Wilson, G. A. & Rannala, B. Bayesian inference of recent migration rates using multilocus genotypes. Genetics 163, 1177-1191 (2003).
    • (2003) Genetics , vol.163 , pp. 1177-1191
    • Wilson, G.A.1    Rannala, B.2
  • 32
    • 0037307413 scopus 로고    scopus 로고
    • Signature of natural selection in the human genome
    • Bamshad, M. & Wooding, S. P. Signature of natural selection in the human genome. Nature Rev. Genet. 4, 99-111 (2003).
    • (2003) Nature Rev. Genet. , vol.4 , pp. 99-111
    • Bamshad, M.1    Wooding, S.P.2
  • 33
    • 0036006020 scopus 로고    scopus 로고
    • Testing for genetic evidence of population expansion and contraction: An empirical analysis of microsatellite DNA variation using a hierarchical Bayesian model
    • Storz, J. F. & Beaumont, M. A. Testing for genetic evidence of population expansion and contraction: an empirical analysis of microsatellite DNA variation using a hierarchical Bayesian model. Evolution 58, 154-166 (2002).
    • (2002) Evolution , vol.58 , pp. 154-166
    • Storz, J.F.1    Beaumont, M.A.2
  • 34
    • 1642269679 scopus 로고    scopus 로고
    • Identifying adaptive genetic divergence among populations from genome scans
    • in the press
    • Beaumont, M. A. & Balding, D. J. Identifying adaptive genetic divergence among populations from genome scans. Mol. Ecol. (in the press).
    • Mol. Ecol.
    • Beaumont, M.A.1    Balding, D.J.2
  • 35
    • 0037944231 scopus 로고    scopus 로고
    • Maximum likelihood and Bayesian methods for estimating the distribution of selective effects among classes of mutations using DNA polymorphism data
    • Bustamante, C. D., Nielsen, R. & Hartl, D. L. Maximum likelihood and Bayesian methods for estimating the distribution of selective effects among classes of mutations using DNA polymorphism data. Theor. Popul. Biol. 63, 91-103 (2003).
    • (2003) Theor. Popul. Biol. , vol.63 , pp. 91-103
    • Bustamante, C.D.1    Nielsen, R.2    Hartl, D.L.3
  • 36
    • 0034809334 scopus 로고    scopus 로고
    • Statistical tests of selective neutrality in the age of genomics
    • Nielsen, R. Statistical tests of selective neutrality in the age of genomics. Heredity 86, 641-647 (2001).
    • (2001) Heredity , vol.86 , pp. 641-647
    • Nielsen, R.1
  • 37
    • 0031972161 scopus 로고    scopus 로고
    • Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene
    • Nielsen, R. & Yang, Z. Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene. Genetics 148, 929-936 (1998). The first formal statistical method for inferring site-specific selection on DNA codons.
    • (1998) Genetics , vol.148 , pp. 929-936
    • Nielsen, R.1    Yang, Z.2
  • 38
    • 0037379673 scopus 로고    scopus 로고
    • Phylogeny estimation: Traditional and Bayesian approaches
    • Holder, M. & Lewis, P. O. Phylogeny estimation: traditional and Bayesian approaches. Nature Rev Genet. 4, 275-284 (2003). Reviews the many recent applications of Bayesian inference in phylogeny estimation.
    • (2003) Nature Rev Genet. , vol.4 , pp. 275-284
    • Holder, M.1    Lewis, P.O.2
  • 40
    • 0027912333 scopus 로고
    • Detecting subtle sequence signals: A Gibbs sampling strategy for multiple alignment
    • Lawrence, C. E. et al. Detecting subtle sequence signals: a Gibbs sampling strategy for multiple alignment. Science 262, 208-214 (1993). The methods and models used in this paper have led to the development of a large number of Bayesian methods for the analyses of sequence data by some of the authors and their groups.
    • (1993) Science , vol.262 , pp. 208-214
    • Lawrence, C.E.1
  • 41
    • 0024557590 scopus 로고
    • Stochastic models for heterogeneous DNA sequences
    • Churchill, G. A. Stochastic models for heterogeneous DNA sequences. Bull. Math. Biol. 51, 79-94 (1989). One of the earliest papers to use a hidden Markov model to analyse DNA sequence data.
    • (1989) Bull. Math. Biol. , vol.51 , pp. 79-94
    • Churchill, G.A.1
  • 42
    • 0000241874 scopus 로고
    • Genmark: Parallel gene recognition for both DNA strands
    • Borodovsky, M., McIninch & J. Genmark: parallel gene recognition for both DNA strands. Comput. Chem. 17, 123-133 (1993).
    • (1993) Comput. Chem. , vol.17 , pp. 123-133
    • Borodovsky, M.1    McIninch2
  • 43
    • 84950424966 scopus 로고
    • Bayesian models for multiple local sequence alignment and Gibbs sampling strategies
    • Liu, J. S., Neuwald, A. F. & Lawrence, C. E. Bayesian models for multiple local sequence alignment and Gibbs sampling strategies. J. Am. Stat. Ass. 90, 1156-1170 (1995).
    • (1995) J. Am. Stat. Ass. , vol.90 , pp. 1156-1170
    • Liu, J.S.1    Neuwald, A.F.2    Lawrence, C.E.3
  • 44
    • 0036493242 scopus 로고    scopus 로고
    • BALSA: Bayesian algorithm for local sequence alignment
    • Webb, B. M., Liu, J. S. & Lawrence, C. E. BALSA: Bayesian algorithm for local sequence alignment. Nucleic Acids Res. 30, 1268-1277 (2002).
    • (2002) Nucleic Acids Res. , vol.30 , pp. 1268-1277
    • Webb, B.M.1    Liu, J.S.2    Lawrence, C.E.3
  • 45
    • 0043123063 scopus 로고    scopus 로고
    • Gibbs recursive sampler: Finding transcription factor binding sites
    • Thompson, W., Rouchka, E. C., Lawrence & C. E. Gibbs recursive sampler: finding transcription factor binding sites. Nucleic Acids Res. 31, 3580-3585 (2003).
    • (2003) Nucleic Acids Res. , vol.31 , pp. 3580-3585
    • Thompson, W.1    Rouchka, E.C.2    Lawrence, C.E.3
  • 46
    • 0033059370 scopus 로고    scopus 로고
    • Bayesian inference on biopolymer models
    • Liu, J. S. & Lawrence, C. E. Bayesian inference on biopolymer models. Bioinformatics 15, 38-52 (1999).
    • (1999) Bioinformatics , vol.15 , pp. 38-52
    • Liu, J.S.1    Lawrence, C.E.2
  • 47
    • 0004260223 scopus 로고    scopus 로고
    • (eds Balding, D. J., Bishop, M. & Cannings, C.) (John Wiley and Sons, Chichester)
    • Liu, J.S. & Logvinenko, T. in Handbook of Statistical Genetics (eds Balding, D. J., Bishop, M. & Cannings, C.) 66-93 (John Wiley and Sons, Chichester, 2003).
    • (2003) Handbook of Statistical Genetics , pp. 66-93
    • Liu, J.S.1    Logvinenko, T.2
  • 48
    • 0033060905 scopus 로고    scopus 로고
    • Bayesian restoration of a hidden Markov chain with aplications to DNA sequencing
    • Churchill, G. A. & Lazareva, B. Bayesian restoration of a hidden Markov chain with aplications to DNA sequencing. J. Comput. Biol. 6, 261-277 (1999).
    • (1999) J. Comput. Biol. , vol.6 , pp. 261-277
    • Churchill, G.A.1    Lazareva, B.2
  • 49
    • 2042437650 scopus 로고    scopus 로고
    • Initial sequencing and analysis of the human genome
    • Human Genome Sequencing Consortium. Initial sequencing and analysis of the human genome. Nature 409, 860-921 (2001).
    • (2001) Nature , vol.409 , pp. 860-921
  • 50
    • 0035895505 scopus 로고    scopus 로고
    • The sequence of the human genome
    • Venter, J. C. et al. The sequence of the human genome. Science 291, 1304-1351 (2001).
    • (2001) Science , vol.291 , pp. 1304-1351
    • Venter, J.C.1
  • 51
    • 0141566652 scopus 로고    scopus 로고
    • New explicit expressions for relative frequencies of single-nucleotide polymorphisms with application to statistical inference on population growth
    • Polanski, A. & Kimmel, M. New explicit expressions for relative frequencies of single-nucleotide polymorphisms with application to statistical inference on population growth. Genetics 165, 427-436 (2003).
    • (2003) Genetics , vol.165 , pp. 427-436
    • Polanski, A.1    Kimmel, M.2
  • 52
    • 0037355118 scopus 로고    scopus 로고
    • Single-nucleotide polymorphisms in soybean
    • Zhu, Y. L. et al. Single-nucleotide polymorphisms in soybean. Genetics 163, 1123-1134 (2003).
    • (2003) Genetics , vol.163 , pp. 1123-1134
    • Zhu, Y.L.1
  • 53
    • 0032706623 scopus 로고    scopus 로고
    • A general approach to single-nucleotide polymorphism discovery
    • Marth, G. T. et al. A general approach to single-nucleotide polymorphism discovery. Nature Genet. 23, 452-456 (1999).
    • (1999) Nature Genet. , vol.23 , pp. 452-456
    • Marth, G.T.1
  • 54
    • 0033779878 scopus 로고    scopus 로고
    • Genome-wide analysis of single-nucleotide polymorphisms in human expressed sequences
    • Irizany, K. et al. Genome-wide analysis of single-nucleotide polymorphisms in human expressed sequences. Nature Genet. 26, 233-236 (2000).
    • (2000) Nature Genet. , vol.26 , pp. 233-236
    • Irizany, K.1
  • 56
    • 0028913523 scopus 로고
    • An E-M algorithm and testing strategy for multiple-locus haplotypes
    • Long, J. C., Williams, R. C. & Urbanek, M. An E-M algorithm and testing strategy for multiple-locus haplotypes. Am. J. Hum. Genet. 56, 799-810 (1995).
    • (1995) Am. J. Hum. Genet. , vol.56 , pp. 799-810
    • Long, J.C.1    Williams, R.C.2    Urbanek, M.3
  • 57
    • 0029130796 scopus 로고
    • Maximum-likelihood estimation of molecular haplotype frequencies in a diploid population
    • Excoffier, L. & Slatkin, M. Maximum-likelihood estimation of molecular haplotype frequencies in a diploid population. Mol. Biol. Evol. 12, 921-927 (1995).
    • (1995) Mol. Biol. Evol. , vol.12 , pp. 921-927
    • Excoffier, L.1    Slatkin, M.2
  • 58
    • 0036138183 scopus 로고    scopus 로고
    • Bayesian haplotype inference for multiple linked single-nucleotide polymorphisms
    • Niu, T., Qin, Z. S., Xu, X. & Liu, J. S. Bayesian haplotype inference for multiple linked single-nucleotide polymorphisms. Am. J. Hum. Genet. 70, 157-169 (2002).
    • (2002) Am. J. Hum. Genet. , vol.70 , pp. 157-169
    • Niu, T.1    Qin, Z.S.2    Xu, X.3    Liu, J.S.4
  • 59
    • 0035071957 scopus 로고    scopus 로고
    • A new statistical method for haplotype reconstruction from population data
    • Stephens, M., Smith, N. J. & Donnelly, P. A new statistical method for haplotype reconstruction from population data. Am. J. Hum. Genet. 68, 978-989 (2001).
    • (2001) Am. J. Hum. Genet. , vol.68 , pp. 978-989
    • Stephens, M.1    Smith, N.J.2    Donnelly, P.3
  • 60
    • 0002629270 scopus 로고
    • Maximum likelihood from incomplete data via the EM algorithm
    • Dempstar, A. P., Laird, N. M. & Rubin, D. B. Maximum likelihood from incomplete data via the EM algorithm. J. Roy. Statist. Soc. B39, 1-38 (1977).
    • (1977) J. Roy. Statist. Soc. , vol.B39 , pp. 1-38
    • Dempstar, A.P.1    Laird, N.M.2    Rubin, D.B.3
  • 61
    • 0030131165 scopus 로고    scopus 로고
    • Testing for linkage disequilibrium in genotypic data using the Expectation-Maximization algorithm
    • Slatkin, M. & Excoffier, L. Testing for linkage disequilibrium in genotypic data using the Expectation-Maximization algorithm. Heredity 76, 377-383 (1996).
    • (1996) Heredity , vol.76 , pp. 377-383
    • Slatkin, M.1    Excoffier, L.2
  • 62
    • 0036884167 scopus 로고    scopus 로고
    • The use and analysis of microarray data
    • Butte, A. The use and analysis of microarray data. Nature Rev. Genet. 1, 951-960 (2002).
    • (2002) Nature Rev. Genet. , vol.1 , pp. 951-960
    • Butte, A.1
  • 63
    • 0004260223 scopus 로고    scopus 로고
    • (eds Balding, D. J., Bishop, M. & Cannings, C.) (John Wiley and Sons, Chichester)
    • Huber, W., von Heydebreck, A. & Vingron, M. in Handbook of Statistical Genetics (eds Balding, D. J., Bishop, M. & Cannings, C.) 162-187 (John Wiley and Sons, Chichester, 2003).
    • (2003) Handbook of Statistical Genetics , pp. 162-187
    • Huber, W.1    Von Heydebreck, A.2    Vingron, M.3
  • 64
    • 0034948896 scopus 로고    scopus 로고
    • A Bayesian framework for the analysis of microarray expression data: Regularized t-test and statistical inferences of gene changes
    • Baldi, P. & Long, A. D. A Bayesian framework for the analysis of microarray expression data: regularized t-test and statistical inferences of gene changes. Bioinformatics 17, 509-519 (2001).
    • (2001) Bioinformatics , vol.17 , pp. 509-519
    • Baldi, P.1    Long, A.D.2
  • 65
    • 0042424602 scopus 로고    scopus 로고
    • Statistical significance for genomewide studies
    • Storey, J. D. & Tibshirani, R. Statistical significance for genomewide studies. Proc. Natl Acad. Sci. USA 100, 9440-9445 (2003).
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 9440-9445
    • Storey, J.D.1    Tibshirani, R.2
  • 66
    • 0036489048 scopus 로고    scopus 로고
    • Bayesian models for gene expression with DNA microarray data
    • Ibrahim, J. G., Chen, M. H. & Gray, R. J. Bayesian models for gene expression with DNA microarray data. J. Am. Stat. Ass. 97, 88-99 (2002).
    • (2002) J. Am. Stat. Ass. , vol.97 , pp. 88-99
    • Ibrahim, J.G.1    Chen, M.H.2    Gray, R.J.3
  • 67
    • 0042744696 scopus 로고    scopus 로고
    • Detecting differentially expressed genes in microarrays using Bayesian model selection
    • Ishwaran, H. & Rao, J. S. Detecting differentially expressed genes in microarrays using Bayesian model selection. J. Am. Stat. Ass. 98, 438-455 (2003).
    • (2003) J. Am. Stat. Ass. , vol.98 , pp. 438-455
    • Ishwaran, H.1    Rao, J.S.2
  • 69
    • 0032863227 scopus 로고    scopus 로고
    • Large-scale gene expression data analysis: A new challenge to computational biologists
    • Zhang, M. Q. Large-scale gene expression data analysis: a new challenge to computational biologists. Genome Res. 9, 681-688 (2003).
    • (2003) Genome Res. , vol.9 , pp. 681-688
    • Zhang, M.Q.1
  • 70
    • 1842486923 scopus 로고    scopus 로고
    • A quantitative study of gene regulation involved in the immune response of anopheline mosquitoes: An application of Bayesian hierarchical clustering of curves
    • Heard, N. A., Holmes, C. C. & Stephens, D. A. A quantitative study of gene regulation involved in the immune response of anopheline mosquitoes: an application of Bayesian hierarchical clustering of curves. Department of Statistics, Imperial College, London [online], 〈 http://stats.ma.ic.ac.uk/~ccholmes/malaria_clustering.pdf〉 (2003).
    • (2003) Department of Statistics, Imperial College, London [Online]
    • Heard, N.A.1    Holmes, C.C.2    Stephens, D.A.3
  • 71
    • 0036913623 scopus 로고    scopus 로고
    • Mapping project moves forward despite controversy
    • Dove, A. Mapping project moves forward despite controversy. Nature Med. 12, 1337 (2002).
    • (2002) Nature Med. , vol.12 , pp. 1337
    • Dove, A.1
  • 72
    • 0035553825 scopus 로고    scopus 로고
    • Finding genes influencing susceptibility to complex diseases in the post-genome era
    • Rannala, B. Finding genes influencing susceptibility to complex diseases in the post-genome era. Am. J. Pharmacogenomics 1, 203-221 (2001).
    • (2001) Am. J. Pharmacogenomics , vol.1 , pp. 203-221
    • Rannala, B.1
  • 74
    • 0033786787 scopus 로고    scopus 로고
    • Linkage disequilibrium and the search for complex disease genes
    • Jorde, L. B. Linkage disequilibrium and the search for complex disease genes. Genome Res. 10, 1435-1444 (2000).
    • (2000) Genome Res. , vol.10 , pp. 1435-1444
    • Jorde, L.B.1
  • 75
    • 0027377799 scopus 로고
    • Transmission test for linkage disequilibrium: The insulin gene region and insulin-dependent diabetes mellitus (IDDM)
    • Spielman, R. S., McGinnis, R. E. & Ewens, W. J. Transmission test for linkage disequilibrium: the insulin gene region and insulin-dependent diabetes mellitus (IDDM). Am. J. Hum. Genet. 52, 506-516 (1993). The first application of a family-based association test. The transmission disequilibrium test has been highly influential and spawned many related approaches.
    • (1993) Am. J. Hum. Genet. , vol.52 , pp. 506-516
    • Spielman, R.S.1    McGinnis, R.E.2    Ewens, W.J.3
  • 76
    • 0141939438 scopus 로고    scopus 로고
    • A Bayesian approach to disease gene location using allelic association
    • Denham, M. C. & Whittaker, J. C. A Bayesian approach to disease, gene location using allelic association. Biostatistics 4, 399-409 (2003).
    • (2003) Biostatistics , vol.4 , pp. 399-409
    • Denham, M.C.1    Whittaker, J.C.2
  • 77
    • 0028981182 scopus 로고
    • An extended transmission/disequilibrium test (TDT) for multi-allele marker loci
    • Sham, P. C. & Curtis, D. An extended transmission/disequilibrium test (TDT) for multi-allele marker loci. Ann. Hum. Genet. 59, 323-336 (1995).
    • (1995) Ann. Hum. Genet. , vol.59 , pp. 323-336
    • Sham, P.C.1    Curtis, D.2
  • 78
    • 0029310503 scopus 로고
    • Microsatellite analysis of population-structure in Canadian polar bears
    • Paetkau, D., Calvert, W., Stirling, I. & Strobeck, C. Microsatellite analysis of population-structure in Canadian polar bears. Mol. Ecol. 4, 347-354 (1995).
    • (1995) Mol. Ecol. , vol.4 , pp. 347-354
    • Paetkau, D.1    Calvert, W.2    Stirling, I.3    Strobeck, C.4
  • 79
    • 0030835444 scopus 로고    scopus 로고
    • Detecting immigration by using multilocus genotypes
    • Rannala, B. & Mountain, J. L. Detecting immigration by using multilocus genotypes. Proc. Natl Acad. Sci. USA 94, 9197-9201 (1997).
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 9197-9201
    • Rannala, B.1    Mountain, J.L.2
  • 80
    • 0034797109 scopus 로고    scopus 로고
    • Bayesian association mapping for quantitative traits in a mixture of two populations
    • Sillanpaa, M. J., Kilpikari, R., Ripatti, S., Onkamo, P. & Uimari, P. Bayesian association mapping for quantitative traits in a mixture of two populations. Genet. Epidemiol. 21 (Suppl. 1), S692-S699 (2001).
    • (2001) Genet. Epidemiol. , vol.21 , Issue.SUPPL. 1
    • Sillanpaa, M.J.1    Kilpikari, R.2    Ripatti, S.3    Onkamo, P.4    Uimari, P.5
  • 81
    • 0037648359 scopus 로고    scopus 로고
    • Control of confounding of genetic associations in stratified populations
    • Hoggart, C. J. et al. Control of confounding of genetic associations in stratified populations. Am. J. Hum. Genet. 72, 1492-1504 (2003).
    • (2003) Am. J. Hum. Genet. , vol.72 , pp. 1492-1504
    • Hoggart, C.J.1
  • 83
    • 0022991467 scopus 로고
    • Mapping complex genetic traits in humans: New methods using a complete RFLP linkage map
    • Lander, E. S. & Botstein, D. Mapping complex genetic traits in humans: new methods using a complete RFLP linkage map. Cold Spring Harb. Symp. Quant. Biol. 51, 49-62 (1986).
    • (1986) Cold Spring Harb. Symp. Quant. Biol. , vol.51 , pp. 49-62
    • Lander, E.S.1    Botstein, D.2
  • 84
    • 0025191342 scopus 로고
    • Approaches to localizing disease, genes as applied to cystic fibrosis
    • Dean, M. et al. Approaches to localizing disease, genes as applied to cystic fibrosis. Nucleic Acids Res. 18, 345-350 (1990).
    • (1990) Nucleic Acids Res. , vol.18 , pp. 345-350
    • Dean, M.1
  • 85
    • 0026949420 scopus 로고
    • Linkage disequilibrium mapping in isolated founder populations: Diastrophic dysplasia in Finland
    • Hastbacka, J. et al. Linkage disequilibrium mapping in isolated founder populations: diastrophic dysplasia in Finland. Nature Genet. 2, 204-211 (1992).
    • (1992) Nature Genet. , vol.2 , pp. 204-211
    • Hastbacka, J.1
  • 86
    • 0033810402 scopus 로고    scopus 로고
    • Methods for multipoint disease mapping using linkage disequilibrium
    • Rannala, B. & Slatkin, M. Methods for multipoint disease mapping using linkage disequilibrium. Genet. Epidemiol. 19 (Suppl. 1), S71-S77 (2000). A comprehensive review of the various likelihood approximations used In linkage-disequilibrium gene mapping.
    • (2000) Genet. Epidemiol. , vol.19 , Issue.SUPPL. 1
    • Rannala, B.1    Slatkin, M.2
  • 87
    • 0034973984 scopus 로고    scopus 로고
    • High-resolution multipoint linkage-disequilibrium mapping in the context of a human genome sequence
    • Rannala, B. & Reeve, J. P. High-resolution multipoint linkage-disequilibrium mapping in the context of a human genome sequence. Am. J. Hum. Genet. 69, 159-178 (2001). The first use of the human genome sequence as an informative prior for Bayesian gene mapping.
    • (2001) Am. J. Hum. Genet. , vol.69 , pp. 159-178
    • Rannala, B.1    Reeve, J.P.2
  • 88
    • 0036177752 scopus 로고    scopus 로고
    • Fine-scale mapping of disease loci via shattered coalescent modeling of genealogies
    • Morris, A. P., Whittaker, J. C. & Balding, D. J. Fine-scale mapping of disease loci via shattered coalescent modeling of genealogies. Am. J. Hum. Genet. 70, 686-707 (2002).
    • (2002) Am. J. Hum. Genet. , vol.70 , pp. 686-707
    • Morris, A.P.1    Whittaker, J.C.2    Balding, D.J.3
  • 89
    • 0041627745 scopus 로고    scopus 로고
    • Joint Bayesian estimation of mutation location and age using linkage disequilibrium
    • Rannala, B. & Reeve, J. P. Joint Bayesian estimation of mutation location and age using linkage disequilibrium. Pac. Symp. Biocomput. 526-534 (2003).
    • (2003) Pac. Symp. Biocomput. , pp. 526-534
    • Rannala, B.1    Reeve, J.P.2
  • 90
    • 0036300177 scopus 로고    scopus 로고
    • DMLE+: Bayesian linkage disequilibrium gene mapping
    • Reeve, J. P. & Rannala, B. DMLE+: Bayesian linkage disequilibrium gene mapping. Bioinformatics 18, 894-895 (2002).
    • (2002) Bioinformatics , vol.18 , pp. 894-895
    • Reeve, J.P.1    Rannala, B.2
  • 91
    • 0034761849 scopus 로고    scopus 로고
    • Bayesian analysis of haplotypes for linkage disequilibrium mapping
    • Uu, J. S., Sabatti, C., Teng, J., Keats, B. J. & Risch, N. Bayesian analysis of haplotypes for linkage disequilibrium mapping. Genome Res. 11, 1718-1724 (2001).
    • (2001) Genome Res. , vol.11 , pp. 1718-1724
    • Uu, J.S.1    Sabatti, C.2    Teng, J.3    Keats, B.J.4    Risch, N.5
  • 93
    • 0036173326 scopus 로고    scopus 로고
    • A Bayesian framework for combining gene predictions
    • Pavlovic, V., Garg, A. & Kasif, S. A Bayesian framework for combining gene predictions. Bioinformatics 18, 19-27 (2002).
    • (2002) Bioinformatics , vol.18 , pp. 19-27
    • Pavlovic, V.1    Garg, A.2    Kasif, S.3
  • 94
    • 0142052944 scopus 로고    scopus 로고
    • A Bayesian networks approach for predicting protein-protein interactions from genomic data
    • Jansen, R. et al. A Bayesian networks approach for predicting protein-protein interactions from genomic data. Science 302, 449-453 (2003).
    • (2003) Science , vol.302 , pp. 449-453
    • Jansen, R.1
  • 95
    • 0004020933 scopus 로고    scopus 로고
    • Academic, New York
    • Ross, S. M. Simulation, (Academic, New York, 1997).
    • (1997) Simulation
    • Ross, S.M.1
  • 97
    • 0001935493 scopus 로고
    • Gene genealogies and the coalescent process
    • Hudson, R. R. Gene genealogies and the coalescent process. Oxford Surveys Evol. Biol. 7, 1-44 (1990).
    • (1990) Oxford Surveys Evol. Biol. , vol.7 , pp. 1-44
    • Hudson, R.R.1
  • 99
    • 77956890234 scopus 로고
    • Monte Carlo sampling methods using Markov chains and their application
    • Hastings, W. K. Monte Carlo sampling methods using Markov chains and their application. Biometrika 57,97-109 (1970).
    • (1970) Biometrika , vol.57 , pp. 97-109
    • Hastings, W.K.1
  • 100
    • 0032735986 scopus 로고    scopus 로고
    • Population growth of human Y chromosomes: A study of Y chromosome microsatellites
    • Pritchard, J. K., Seielstad, M. T., Perez-Lezaun, A. & Feldman, M. W. Population growth of human Y chromosomes: a study of Y chromosome microsatellites. Mol. Biol. Evol. 116, 1791-1798 (1999). The first paper to use an ABC approach to infer population-genetic parameters in a complicated demographic model.
    • (1999) Mol. Biol. Evol. , vol.116 , pp. 1791-1798
    • Pritchard, J.K.1    Seielstad, M.T.2    Perez-Lezaun, A.3    Feldman, M.W.4
  • 101
    • 0032713236 scopus 로고    scopus 로고
    • Detecting population expansion and decline using microsatellites
    • Beaumont, M. A. Detecting population expansion and decline using microsatellites. Genetics 153, 2013-2029 (1999).
    • (1999) Genetics , vol.153 , pp. 2013-2029
    • Beaumont, M.A.1
  • 102
    • 0036021407 scopus 로고    scopus 로고
    • Estimating mutation parameters, population history and genealogy simultaneously from temporally spaced sequence data
    • Drummond, A. J., Nicholls, G. K., Rodrigo, A. G. & Solomon, W. Estimating mutation parameters, population history and genealogy simultaneously from temporally spaced sequence data. Genetics 161, 1307-1320 (2002).
    • (2002) Genetics , vol.161 , pp. 1307-1320
    • Drummond, A.J.1    Nicholls, G.K.2    Rodrigo, A.G.3    Solomon, W.4
  • 103
    • 0037358963 scopus 로고    scopus 로고
    • The epidemiology and iatrogenic transmission of hepatitis C virus in Egypt: A Bayesian coalescent approach
    • Pybus, O. G., Drummond, A. J., Nakano, T., Robertson, B. H. & Rambaut, A. The epidemiology and iatrogenic transmission of hepatitis C virus in Egypt: a Bayesian coalescent approach. Mol. Biol. Evol. 20, 381-387 (2003).
    • (2003) Mol. Biol. Evol. , vol.20 , pp. 381-387
    • Pybus, O.G.1    Drummond, A.J.2    Nakano, T.3    Robertson, B.H.4    Rambaut, A.5
  • 104
    • 0043210659 scopus 로고    scopus 로고
    • Estimation of population growth or decline in genetically monitored populations
    • Beaumont, M. A. Estimation of population growth or decline in genetically monitored populations. Genetics 164, 1139-1160 (2003).
    • (2003) Genetics , vol.164 , pp. 1139-1160
    • Beaumont, M.A.1
  • 105
    • 0015183542 scopus 로고
    • A general model for the analysis of pedigree data
    • Elston, R. C. & Stewart, J. A general model for the analysis of pedigree data. Human Heredity 21, 523-542 (1971).
    • (1971) Human Heredity , vol.21 , pp. 523-542
    • Elston, R.C.1    Stewart, J.2
  • 106
    • 0000803318 scopus 로고
    • Construction of multilocus genetic linkage maps in humans
    • Lander, E. S. & Green, P. Construction of multilocus genetic linkage maps in humans. Proc. Natl Acad. Sci. USA 64, 2362-2367 (1987).
    • (1987) Proc. Natl. Acad. Sci. USA , vol.64 , pp. 2362-2367
    • Lander, E.S.1    Green, P.2
  • 107
    • 0028857541 scopus 로고
    • Rapid multipoint linkage analysis of recessive traits in nuclear families, including homozygosity mapping
    • Krugylak, L., Daly, M. J. & Lander, E. S. Rapid multipoint linkage analysis of recessive traits in nuclear families, including homozygosity mapping. Am. J. Hum. Gen. 56, 519-527 (1995).
    • (1995) Am. J. Hum. Gen. , vol.56 , pp. 519-527
    • Krugylak, L.1    Daly, M.J.2    Lander, E.S.3
  • 108
    • 0026329112 scopus 로고
    • A random walk method for computing genetic location scores
    • Lange, K. & Sobel, E. A random walk method for computing genetic location scores. Am. J. Hum. Gen. 49, 1320-334 (1991).
    • (1991) Am. J. Hum. Gen. , vol.49 , pp. 1320-1334
    • Lange, K.1    Sobel, E.2
  • 110
    • 0004260223 scopus 로고    scopus 로고
    • (ed. Balding, D. J.) (John Wiley and Sons, New York)
    • Hoeschele, I. in Handbook of Statistical Genetics (ed. Balding, D. J.) 599-644 (John Wiley and Sons, New York, 2001). An extensive review of methods used to map quantitative trait loci in humans and other species.
    • (2001) Handbook of Statistical Genetics , pp. 599-644
    • Hoeschele, I.1


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