메뉴 건너뛰기




Volumn 53, Issue 29, 2014, Pages 4761-4768

Role of the occluded conformation in bacterial dihydrofolate reductases

Author keywords

[No Author keywords available]

Indexed keywords

CATALYSIS; ESCHERICHIA COLI; HYDROGEN BONDS;

EID: 84905046896     PISSN: 00062960     EISSN: 15204995     Source Type: Journal    
DOI: 10.1021/bi500507v     Document Type: Article
Times cited : (12)

References (47)
  • 1
    • 0000899457 scopus 로고
    • (Blakley, R. L. and Benkovic, S. J. Eds.), Wiley, New York
    • Blakley, R. L. (1984) in Folates and Pterins (Blakley, R. L. and Benkovic, S. J., Eds.) pp 191-253, Wiley, New York.
    • (1984) Folates and Pterins , pp. 191-253
    • Blakley, R.L.1
  • 2
    • 0031015737 scopus 로고    scopus 로고
    • Loop and subdomain movements in the mechanism of Escherichia coli dihydrofolate reductase: Crystallographic evidence
    • Sawaya, M. R. and Kraut, J. (1997) Loop and subdomain movements in the mechanism of Escherichia coli dihydrofolate reductase: Crystallographic evidence Biochemistry 36, 586-603
    • (1997) Biochemistry , vol.36 , pp. 586-603
    • Sawaya, M.R.1    Kraut, J.2
  • 3
    • 0023668190 scopus 로고
    • Construction and Evaluation of the Kinetic Scheme Associated with Dihydrofolate Reductase from Escherichia coli
    • Fierke, C. A., Johnson, K. A., and Benkovic, S. J. (1987) Construction and Evaluation of the Kinetic Scheme Associated with Dihydrofolate Reductase from Escherichia coli Biochemistry 26, 4085-4092
    • (1987) Biochemistry , vol.26 , pp. 4085-4092
    • Fierke, C.A.1    Johnson, K.A.2    Benkovic, S.J.3
  • 4
    • 33748781457 scopus 로고    scopus 로고
    • The dynamic energy landscape of dihydrofolate reductase catalysis
    • Boehr, D. D., McElheny, D., Dyson, H. J., and Wright, P. E. (2006) The dynamic energy landscape of dihydrofolate reductase catalysis Science 313, 1638-1642
    • (2006) Science , vol.313 , pp. 1638-1642
    • Boehr, D.D.1    McElheny, D.2    Dyson, H.J.3    Wright, P.E.4
  • 5
    • 0037360652 scopus 로고    scopus 로고
    • Moritella profunda sp nov. and Moritella abyssi sp nov., two psychropiezophilic organisms isolated from deep Atlantic sediments
    • Xu, Y., Nogi, Y., Kato, C., Liang, Z. Y., Ruger, H. J., De Kegel, D., and Glansdorff, N. (2003) Moritella profunda sp nov. and Moritella abyssi sp nov., two psychropiezophilic organisms isolated from deep Atlantic sediments Int. J. Syst. Evol. Microbiol. 53, 533-538
    • (2003) Int. J. Syst. Evol. Microbiol. , vol.53 , pp. 533-538
    • Xu, Y.1    Nogi, Y.2    Kato, C.3    Liang, Z.Y.4    Ruger, H.J.5    De Kegel, D.6    Glansdorff, N.7
  • 6
    • 0042337202 scopus 로고    scopus 로고
    • Moritella cold-active dihydrofolate reductase: Are there natural limits to optimization of catalytic efficiency at low temperature?
    • Xu, Y., Feller, G., Gerday, C., and Glansdorff, N. (2003) Moritella cold-active dihydrofolate reductase: Are there natural limits to optimization of catalytic efficiency at low temperature? J. Bacteriol. 185, 5519-5526
    • (2003) J. Bacteriol. , vol.185 , pp. 5519-5526
    • Xu, Y.1    Feller, G.2    Gerday, C.3    Glansdorff, N.4
  • 9
    • 77957194843 scopus 로고    scopus 로고
    • Catalysis by Dihydrofolate Reductase from the Psychropiezophile Moritella profunda
    • Evans, R. M., Behiry, E. M., Tey, L. H., Guo, J. N., Loveridge, E. J., and Allemann, R. K. (2010) Catalysis by Dihydrofolate Reductase from the Psychropiezophile Moritella profunda ChemBioChem 11, 2010-2017
    • (2010) ChemBioChem , vol.11 , pp. 2010-2017
    • Evans, R.M.1    Behiry, E.M.2    Tey, L.H.3    Guo, J.N.4    Loveridge, E.J.5    Allemann, R.K.6
  • 12
    • 79955590707 scopus 로고    scopus 로고
    • NMR Structures of Apo L casei Dihydrofolate Reductase and Its Complexes with Trimethoprim and NADPH: Contributions to Positive Cooperative Binding from Ligand-Induced Refolding, Conformational Changes, and Interligand Hydrophobic Interactions
    • Feeney, J., Birdsall, B., Kovalevskaya, N. V., Smurnyy, Y. D., Navarro Peran, E. M., and Polshakov, V. I. (2011) NMR Structures of Apo L. casei Dihydrofolate Reductase and Its Complexes with Trimethoprim and NADPH: Contributions to Positive Cooperative Binding from Ligand-Induced Refolding, Conformational Changes, and Interligand Hydrophobic Interactions Biochemistry 50, 3609-3620
    • (2011) Biochemistry , vol.50 , pp. 3609-3620
    • Feeney, J.1    Birdsall, B.2    Kovalevskaya, N.V.3    Smurnyy, Y.D.4    Navarro Peran, E.M.5    Polshakov, V.I.6
  • 14
    • 79953823548 scopus 로고    scopus 로고
    • A dynamic knockout reveals that conformational fluctuations influence the chemical step of enzyme catalysis
    • Bhabha, G., Lee, J., Ekiert, D. C., Gam, J., Wilson, I. A., Dyson, H. J., Benkovic, S. J., and Wright, P. E. (2011) A dynamic knockout reveals that conformational fluctuations influence the chemical step of enzyme catalysis Science 332, 234-238
    • (2011) Science , vol.332 , pp. 234-238
    • Bhabha, G.1    Lee, J.2    Ekiert, D.C.3    Gam, J.4    Wilson, I.A.5    Dyson, H.J.6    Benkovic, S.J.7    Wright, P.E.8
  • 15
    • 0023847706 scopus 로고
    • Insights into Enzyme Function from Studies on Mutants of Dihydrofolate Reductase
    • Benkovic, S. J., Fierke, C. A., and Naylor, A. M. (1988) Insights into Enzyme Function from Studies on Mutants of Dihydrofolate Reductase Science 239, 1105-1110
    • (1988) Science , vol.239 , pp. 1105-1110
    • Benkovic, S.J.1    Fierke, C.A.2    Naylor, A.M.3
  • 16
    • 36949079198 scopus 로고
    • Crystalline dihydropteroylglutamic acid
    • Blakley, R. L. (1960) Crystalline dihydropteroylglutamic acid Nature 188, 231-232
    • (1960) Nature , vol.188 , pp. 231-232
    • Blakley, R.L.1
  • 17
    • 0000099770 scopus 로고
    • Enzymic Preparation of the l, l -Diastereoisomer of Tetrahydrofolic Acid
    • Mathews, C. K. and Huennekens, F. M. (1960) Enzymic Preparation of the l, l -Diastereoisomer of Tetrahydrofolic Acid J. Biol. Chem. 235, 3304-3308
    • (1960) J. Biol. Chem. , vol.235 , pp. 3304-3308
    • Mathews, C.K.1    Huennekens, F.M.2
  • 18
    • 79955972786 scopus 로고    scopus 로고
    • Effect of pH on Hydride Transfer by Escherichia coli Dihydrofolate Reductase
    • Loveridge, E. J. and Allemann, R. K. (2011) Effect of pH on Hydride Transfer by Escherichia coli Dihydrofolate Reductase ChemBioChem 12, 1258-1262
    • (2011) ChemBioChem , vol.12 , pp. 1258-1262
    • Loveridge, E.J.1    Allemann, R.K.2
  • 19
    • 32944457660 scopus 로고    scopus 로고
    • Coupling of protein motions and hydrogen transfer during catalysis by Escherichia coli dihydrofolate reductase
    • Swanwick, R. S., Maglia, G., Tey, L., and Allemann, R. K. (2006) Coupling of protein motions and hydrogen transfer during catalysis by Escherichia coli dihydrofolate reductase Biochem. J. 394, 259-265
    • (2006) Biochem. J. , vol.394 , pp. 259-265
    • Swanwick, R.S.1    Maglia, G.2    Tey, L.3    Allemann, R.K.4
  • 22
    • 0343841225 scopus 로고
    • A new synthesis of tetrahydrofolic acid
    • Zakrzewski, S. F. and Sansone, A. M. (1971) A new synthesis of tetrahydrofolic acid Methods Enzymol. 18, 728-731
    • (1971) Methods Enzymol. , vol.18 , pp. 728-731
    • Zakrzewski, S.F.1    Sansone, A.M.2
  • 23
    • 0020466628 scopus 로고
    • Kinetic mechanism of the reaction catalyzed by dihydrofolate reductase from Escherichia coli
    • Stone, S. R. and Morrison, J. F. (1982) Kinetic mechanism of the reaction catalyzed by dihydrofolate reductase from Escherichia coli Biochemistry 21, 3757-3765
    • (1982) Biochemistry , vol.21 , pp. 3757-3765
    • Stone, S.R.1    Morrison, J.F.2
  • 24
    • 0029400480 scopus 로고
    • Nmrpipe: A Multidimensional Spectral Processing System Based on Unix Pipes
    • Delaglio, F., Grzesiek, S., Vuister, G. W., Zhu, G., Pfeifer, J., and Bax, A. (1995) Nmrpipe: A Multidimensional Spectral Processing System Based on Unix Pipes J. Biomol. NMR 6, 277-293
    • (1995) J. Biomol. NMR , vol.6 , pp. 277-293
    • Delaglio, F.1    Grzesiek, S.2    Vuister, G.W.3    Zhu, G.4    Pfeifer, J.5    Bax, A.6
  • 26
    • 0018937021 scopus 로고
    • Binding of coenzyme analogs to Lactobacillus casei dihydrofolate reductase: Binary and ternary complexes
    • Birdsall, B., Burgen, A. S. V., and Roberts, G. C. K. (1980) Binding of coenzyme analogs to Lactobacillus casei dihydrofolate reductase: Binary and ternary complexes Biochemistry 19, 3723-3731
    • (1980) Biochemistry , vol.19 , pp. 3723-3731
    • Birdsall, B.1    Burgen, A.S.V.2    Roberts, G.C.K.3
  • 28
    • 1842531419 scopus 로고    scopus 로고
    • Pivotal role of Gly 121 in dihydrofolate reductase from Escherichia coli: The altered structure of a mutant enzyme may form the basis of its diminished catalytic performance
    • Swanwick, R. S., Shrimpton, P. J., and Allemann, R. K. (2004) Pivotal role of Gly 121 in dihydrofolate reductase from Escherichia coli: The altered structure of a mutant enzyme may form the basis of its diminished catalytic performance Biochemistry 43, 4119-4127
    • (2004) Biochemistry , vol.43 , pp. 4119-4127
    • Swanwick, R.S.1    Shrimpton, P.J.2    Allemann, R.K.3
  • 29
    • 11144328151 scopus 로고    scopus 로고
    • Conformational changes in the active site loops of dihydrofolate reductase during the catalytic cycle
    • Venkitakrishnan, R. P., Zaborowski, E., McElheny, D., Benkovic, S. J., Dyson, H. J., and Wright, P. E. (2004) Conformational changes in the active site loops of dihydrofolate reductase during the catalytic cycle Biochemistry 43, 16046-16055
    • (2004) Biochemistry , vol.43 , pp. 16046-16055
    • Venkitakrishnan, R.P.1    Zaborowski, E.2    McElheny, D.3    Benkovic, S.J.4    Dyson, H.J.5    Wright, P.E.6
  • 31
    • 0035928796 scopus 로고    scopus 로고
    • Backbone dynamics in dihydrofolate reductase complexes: Role of loop flexibility in the catalytic mechanism
    • Osborne, M. J., Schnell, J., Benkovic, S. J., Dyson, H. J., and Wright, P. E. (2001) Backbone dynamics in dihydrofolate reductase complexes: Role of loop flexibility in the catalytic mechanism Biochemistry 40, 9846-9859
    • (2001) Biochemistry , vol.40 , pp. 9846-9859
    • Osborne, M.J.1    Schnell, J.2    Benkovic, S.J.3    Dyson, H.J.4    Wright, P.E.5
  • 33
    • 0021755630 scopus 로고
    • Catalytic mechanism of the dihydrofolate reductase reaction as determined by pH studies
    • Stone, S. R. and Morrison, J. F. (1984) Catalytic mechanism of the dihydrofolate reductase reaction as determined by pH studies Biochemistry 23, 2753-2758
    • (1984) Biochemistry , vol.23 , pp. 2753-2758
    • Stone, S.R.1    Morrison, J.F.2
  • 34
    • 0025756093 scopus 로고
    • Impact on catalysis of secondary structural manipulation of the αc-helix of Escherichia coli dihydrofolate reductase
    • Li, L. and Benkovic, S. J. (1991) Impact on catalysis of secondary structural manipulation of the αC-helix of Escherichia coli dihydrofolate reductase Biochemistry 30, 1470-1478
    • (1991) Biochemistry , vol.30 , pp. 1470-1478
    • Li, L.1    Benkovic, S.J.2
  • 35
    • 0030043244 scopus 로고    scopus 로고
    • Engineering specificity for folate into dihydrofolate reductase from Escherichia coli
    • Posner, B. A., Li, L. Y., Bethell, R., Tsuji, T., and Benkovic, S. J. (1996) Engineering specificity for folate into dihydrofolate reductase from Escherichia coli Biochemistry 35, 1653-1663
    • (1996) Biochemistry , vol.35 , pp. 1653-1663
    • Posner, B.A.1    Li, L.Y.2    Bethell, R.3    Tsuji, T.4    Benkovic, S.J.5
  • 36
    • 0025037428 scopus 로고
    • Crystal Structures of Recombinant Human Dihydrofolate Reductase Complexed with Folate and 5-Deazafolate
    • Davies, J. F., Delcamp, T. J., Prendergast, N. J., Ashford, V. A., Freisheim, J. H., and Kraut, J. (1990) Crystal Structures of Recombinant Human Dihydrofolate Reductase Complexed with Folate and 5-Deazafolate Biochemistry 29, 9467-9479
    • (1990) Biochemistry , vol.29 , pp. 9467-9479
    • Davies, J.F.1    Delcamp, T.J.2    Prendergast, N.J.3    Ashford, V.A.4    Freisheim, J.H.5    Kraut, J.6
  • 38
    • 80051486812 scopus 로고    scopus 로고
    • Two Parallel Pathways in the Kinetic Sequence of the Dihydrofolate Reductase from Mycobacterium tuberculosis
    • Czekster, C. M., Vandemeulebroucke, A., and Blanchard, J. S. (2011) Two Parallel Pathways in the Kinetic Sequence of the Dihydrofolate Reductase from Mycobacterium tuberculosis Biochemistry 50, 7045-7056
    • (2011) Biochemistry , vol.50 , pp. 7045-7056
    • Czekster, C.M.1    Vandemeulebroucke, A.2    Blanchard, J.S.3
  • 39
    • 0025325955 scopus 로고
    • Unusual transient- and steady-state kinetic behavior is predicted by the kinetic scheme operational for recombinant human dihydrofolate reductase
    • Appleman, J. R., Beard, W. A., Delcamp, T. J., Prendergast, N. J., Freisheim, J. H., and Blakley, R. L. (1990) Unusual transient- and steady-state kinetic behavior is predicted by the kinetic scheme operational for recombinant human dihydrofolate reductase J. Biol. Chem. 265, 2740-2748
    • (1990) J. Biol. Chem. , vol.265 , pp. 2740-2748
    • Appleman, J.R.1    Beard, W.A.2    Delcamp, T.J.3    Prendergast, N.J.4    Freisheim, J.H.5    Blakley, R.L.6
  • 40
    • 0032485627 scopus 로고    scopus 로고
    • Deletion of a highly motional residue affects formation of the Michaelis complex for Escherichia coli dihydrofolate reductase
    • Miller, G. P. and Benkovic, S. J. (1998) Deletion of a highly motional residue affects formation of the Michaelis complex for Escherichia coli dihydrofolate reductase Biochemistry 37, 6327-6335
    • (1998) Biochemistry , vol.37 , pp. 6327-6335
    • Miller, G.P.1    Benkovic, S.J.2
  • 41
    • 0035969953 scopus 로고    scopus 로고
    • Interloop contacts modulate ligand cycling during catalysis by Escherichia coli dihydrofolate reductase
    • Miller, G. P., Wahnon, D. C., and Benkovic, S. J. (2001) Interloop contacts modulate ligand cycling during catalysis by Escherichia coli dihydrofolate reductase Biochemistry 40, 867-875
    • (2001) Biochemistry , vol.40 , pp. 867-875
    • Miller, G.P.1    Wahnon, D.C.2    Benkovic, S.J.3
  • 43
    • 84865999329 scopus 로고    scopus 로고
    • Conformational selection and induced changes along the catalytic cycle of Escherichia coli dihydrofolate reductase
    • Weikl, T. R. and Boehr, D. D. (2012) Conformational selection and induced changes along the catalytic cycle of Escherichia coli dihydrofolate reductase Proteins 80, 2369-2383
    • (2012) Proteins , vol.80 , pp. 2369-2383
    • Weikl, T.R.1    Boehr, D.D.2
  • 44
    • 84855945039 scopus 로고    scopus 로고
    • Reduced Susceptibility of Moritella profunda Dihydrofolate Reductase to Trimethoprim is Not Due to Glutamate 28
    • Loveridge, E. J., Dawson, W. M., Evans, R. M., Sobolewska, A., and Allemann, R. K. (2011) Reduced Susceptibility of Moritella profunda Dihydrofolate Reductase to Trimethoprim is Not Due to Glutamate 28 Protein J. 30, 546-548
    • (2011) Protein J. , vol.30 , pp. 546-548
    • Loveridge, E.J.1    Dawson, W.M.2    Evans, R.M.3    Sobolewska, A.4    Allemann, R.K.5
  • 45
    • 84858758329 scopus 로고    scopus 로고
    • Evidence that a 'dynamic knockout' in Escherichia coli dihydrofolate reductase does not affect the chemical step of catalysis
    • Loveridge, E. J., Behiry, E. M., Guo, J., and Allemann, R. K. (2012) Evidence that a 'dynamic knockout' in Escherichia coli dihydrofolate reductase does not affect the chemical step of catalysis Nat. Chem. 4, 292-297
    • (2012) Nat. Chem. , vol.4 , pp. 292-297
    • Loveridge, E.J.1    Behiry, E.M.2    Guo, J.3    Allemann, R.K.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.