Biogenic volatile emissions from the soil

Plant, Cell and Environment

Volumn 37, Issue 8, 2014, Pages 1866-1891

  Penuelas J ^a,b   Asensio, D ^a,b   Tholl, D ^c   Wenke, K ^d   Rosenkranz, M ^e   Piechulla, B ^d   Schnitzler, J P ^e  

^a CSIC   (Spain)

^b CREAF   (Spain)

^c VIRGINIA POLYTECHNIC INSTITUTE AND STATE UNIVERSITY   (United States)

^d UNIVERSITY OF ROSTOCK   (Germany)

^e INSTITUTE OF EPIDEMIOLOGY   (Germany)

Author keywords

Biogenic VOCs; Microbial VOCs; Plant root volatile emission; Rhizobacteria; Rhizosphere; Soil fungi; Volatile organic compounds (VOCs)

Indexed keywords

AIR-SOIL INTERACTION; BIOGENIC EMISSION; FUNGUS; RHIZOBACTERIUM; RHIZOSPHERE; ROOT SYSTEM; SOIL BIOTA; SOIL EMISSION; SOURCE-SINK DYNAMICS; VOLATILE ORGANIC COMPOUND;

VOLATILE ORGANIC COMPOUND;

ATMOSPHERE; BIOGENIC VOCS; CHEMISTRY; ECOSYSTEM; MICROBIAL VOCS; MICROBIOLOGY; PLANT ROOT; PLANT ROOT VOLATILE EMISSION; REVIEW; RHIZOBACTERIA; RHIZOSPHERE; SOIL; SOIL FUNGI; VOLATILE ORGANIC COMPOUNDS (VOCS);

BIOGENIC VOCS; MICROBIAL VOCS; PLANT ROOT VOLATILE EMISSION; RHIZOBACTERIA; RHIZOSPHERE; SOIL FUNGI; VOLATILE ORGANIC COMPOUNDS (VOCS);

ATMOSPHERE; ECOSYSTEM; PLANT ROOTS; SOIL; SOIL MICROBIOLOGY; VOLATILE ORGANIC COMPOUNDS;

EID: 84904260224     PISSN: 01407791     EISSN: 13653040     Source Type: Journal    
DOI: 10.1111/pce.12340     Document Type: Review

References (297)

1. Aaltonen H., Pumpanen J., Pihlatie M., Hakola H., Hellén H., Kulmala L., ... Bäck J., (2011) Boreal pine forest floor biogenic volatile organic compound emissions peak in early summer and autumn. Agricultural and Forest Meteorology 151, 682-691.
2. Aaltonen H., Aalto J., Kolari P., Pihlatie M., Pumpanen J., Kulmala M., etal. (2013) Continuous VOC flux measurements on boreal forest floor. Plant and Soil 369, 241-256.
3. Afsharypuor S. & Sepehrnejad S. (2006) Analysis of the volatile constituents of the seeds, roots, leaves and whole flowering plant of Lepidium latifolium L. Journal of Essential Oil Research 18, 106-107.
4. Agrawal A.A. (1998) Induced responses to herbivory and increased plant performance. Science 29, 1201-1202.
5. Aissani N., Tedeschi P., Maietti A., Brandolini V., Garau V.L. & Caboni P. (2013) Nematicidal activity of allylisothiocyanate from horseradish (Armoracia rusticana) roots against Meloidogyne incognita. Journal of Agricultural and Food Chemistry 61, 4723-4727.
6. Ali J.G., Alborn H.T., Campos-Herrera R., Kaplan F., Duncan L.W., Rodriguez-Saona C., ... Stelinski L.L. (2011) Subterranean, herbivore-induced plant volatile increases biological control activity of multiple beneficial nematode species in distinct habitats. PlosONE 7, 1-6.
7. Aratchige N.S., Lesna I. & Sabelis M.W. (2004) Below-ground plant parts emit herbivore-induced volatiles: olfactory responses of a predatory mite to tulip bulbs infested by rust mites. Experimental and Applied Acarology 33, 21-30.
8. Arroo R.R.J., Jacobs J., Dekoning E.A.H., Dewaard M., Vandewesterlo E., Vangalen P.M., ... Wullems G.J. (1995) Thiophene interconversions in Tagetes patula root cultures. Phytochemistry 38, 1193-1197.
9. Arthur E., Moldrup P., Schjonning P. & de Jonge L.W. (2012) Linking particle and pore size distribution parameters to soil gas transport properties. Soil Science Society of America Journal 76, 18-27.
10. Asensio D., Peñuelas J., Ogaya R. & Llusià J. (2007a) Seasonal soil VOC exchange rates in a Mediterranean holm oak forest and their responses to drought conditions. Atmospheric Environment 41, 2456-2466.
11. Asensio D., Peñuelas J., Filella I. & Llusià J. (2007b) On-line screening of soil VOCs exchange responses to moisture, temperature and root presence. Plant and Soil 291, 249-261.
12. Asensio D., Peñuelas J., Llusià J., Ogaya R. & Filella I. (2007c) Interannual and interseasonal soil CO2 efflux and VOC exchange rates in a Mediterranean holm oak forest in response to experimental drought. Soil Biology and Biochemistry 39, 2471-2484.
13. Asensio D., Owen S., Llusià J. & Peñuelas J. (2008a) The distribution of volatile isoprenoids in the soil horizons around Pinus halepensis trees. Soil Biology and Biochemistry 40, 2937-2947.
14. Asensio D., Peñuelas J., Prieto P., Estiarte M., Filella I. & Llusià J. (2008b) Interannual and seasonal changes in the soil exchange rates of monoterpenes and other VOCs in a Mediterranean shrubland. European Journal of Soil Science 59, 878-891.
15. Attaran E., Rostás M. & Zeier J. (2008) Pseudomonas syringae elicits emission of the terpenoid (E, E)-4, 8, 12-trimethyl-1, 3, 7, 11-tridecatetraene in Arabidopsis leaves via jasmonate signaling and expression of the terpene synthase TPS4. Molecular Plant-Microbe Interactions 21, 1482-1497.
16. Attieh J., Djiana R., Koonjul P., Etienne C., Sparace S.A. & Saini H.S. (2002) Cloning and functional expression of two plant thiol methyltransferases: a new class of enzymes involved in the biosynthesis of sulfur volatiles. Plant Molecular Biology 50, 511-521.
17. Bais H.P., Weir T.L., Perry L.G., Gilroy S. & Vivanco J.M. (2006) The role of root exudates in rhizosphere interactions with plants and other organisms. Annual Review of Plant Biology 57, 233-266.
18. Baldocchi D. (1997) Flux footprints within and over forest canopies. Boundary-Layer Meteorology 85, 273-292.
19. Baldwin I.T. & Preston C.A. (1999) The eco-physiological complexity of plant responses to herbivores. Planta 208, 137-145.
20. Bartelt R.J. & Wicklow D.T. (1999) Volatiles from Fusarium verticillioides (Sacc.) Nirenb. and their attractiveness to nitidulid beetles. Journal of Agricultural Food and Chemistry 47, 2447-2454.
21. Bastos A.C. & Magan N. (2007) Soil volatile fingerprints: use for discrimination between soil types under different environmental conditions. Sensor Actuator B 125, 556-562.
22. 2 and root exudates in vesicular-arbuscular mycorrhizal symbiosis. Applied and Environmental Microbiology 55, 2320-2325.
23. Berg G., Roskot N., Steidle A., Eberl L., Zock A. & Smalla K. (2002) Plant-dependent genotypic and phenotypic diversity of antagonistic rhizobacteria isolated from different Verticillium host plants. Applied and Environmental Microbiology 68, 3328-3338.
24. Bertin C., Yang X. & Weston L.A. (2003) The role of root exudates and allelochemicals in the rhizosphere. Plant and Soil 256, 67-83.
25. Blagodatsky S. & Smith P. (2012) Soil physics meets soil biology: towards better mechanistic prediction of greenhouse gas emissions from soil. Soil Biology & Biochemistry 47, 78-92.
26. Blazevic I. & Mastelic J. (2009) Glucosinolate degradation products and other bound and free volatiles in the leaves and roots of radish (Raphanus sativus L.). Food Chemistry 113, 96-102.
27. Blom D., Fabbri C., Connor E.C., Schiestl F.P., Klauser D.R., Boller T., ... Weisskopf L. (2011) Production of plant growth modulating volatiles is widespread among rhizosphere bacteria and strongly depends on culture conditions. Environmental Microbiology 13, 3047-3058.
28. Boatright J., Negre F., Chen X.L., Kish C.M., Wood B., Peel G., ... Dudareva N. (2004) Understanding in vivo benzenoid metabolism in petunia petal tissue. Plant Physiology 135, 1993-2011.
29. Bodenhausen N., Horton M.W. & Bergelson J. (2013) Bacterial communities associated with the leaves and the roots of Arabidopsis thaliana. PLoS ONE 8, e56329.
30. Boff M.I.C., Zoon F.C. & Smits P.H. (2001) Orientation of Heterorhabditis megidis to insect hosts and plant roots in a Y-tube sand olfactometer. Entomologia Experimentalis et Applicata 98, 329-337.
31. Bohlmann J., Stauber E.J., Krock B., Oldham N.J., Gershenzon J. & Baldwin I.T. (2002) Gene expression of 5-epi-aristolochene synthase and formation of capsidiol in roots of Nicotiana attenuata and N. sylvestris. Phytochemistry 60, 109-116.
32. Bonfante P. & Anca I.A. (2009) Plants, mycorrhizal fungi, and bacteria: a network of interactions. Annual Review of Microbiology 63, 363-383.
33. Boyle M., Frankenberger W.T. & Stolzy L.H. (1989) The influence of organic matter on soil aggregation and water infiltration. Journal of Production Agriculture 2, 290-299.
34. Brancaleoni E., Scovaventi M., Frattoni M., Mabilia R. & Ciccioli P. (1999) Novel family of multi-layer cartridges filled with a new carbon adsorbent for the quantitative determination of volatile organic compounds in the atmosphere. Journal of Chromatography A 845, 317-328.
35. Breheret S., Talou T., Rapior S. & Bessiere J.M. (1999) Geosmin, a sesquiterpenoid compound responsible for the musty-earthy odor of Cortinarius herculeus, Cystoderma amianthinum, and Cy. carcharias. Mycologia 91, 117-120.
36. Burmølle M., Hansen L.H. & Sørensen S.J. (2007) Establishment and early succession of a multispecies biofilm composed of soil bacteria. Microbial Ecology 54, 352-362.
37. Buskov S., Serra B., Rosa E., Sorensen H. & Sorensen J.C. (2002) Effects of intact glucosinolates and products produced from glucosinolates in myrosinase-catalyzed hydrolysis on the potato cyst nematode (Globodera rostochiensis cv. Woll). Journal of Agricultural and Food Chemistry 50, 690-695.
38. Campos V.P., Canuto de Pinho R.S. & Freire E.S. (2010) Volatiles produced by interacting microorganisms potentially useful for the control of plant pathogens. Ciência e Agrotecnologia Lavras 34, 525-535.
39. Cane D.E. & Watt R.M. (2003) Expression and mechanistic analysis of a germacradienol synthase from Streptomyces coelicolor implicated in geosmin biosynthesis. Proceedings of the National Academy of Sciences of the United States of America 100, 1547-1551.
40. Cardoza Y.J., Teal P.E.A. & Tumlinson J.H. (2003) Effect of peanut plant fungal infection on oviposition preference by Spodoptera exigua and on host-searching behavior by Cotesia marginiventris. Environmental Entomology 32, 970-976.
41. Caruthers J.M., Kang I., Rynkiewicz M.J., Cane D.E. & Christianson D.W. (2000) Crystal structure determination of aristolochene synthase from the blue cheese mold, Penicillium roqueforti. Journal of Biological Chemistry 275, 25533-25539.
42. Cesco S., Mimmo T., Tonon G., Tomasi N., Pinton R., Terzano R., ... Nannipieri P. (2012) Plant-borne flavonoids released into the rhizosphere: impact on soil bio-activities related to plant nutrition. A review. Biology and Fertility of Soils 48, 123-149.
43. Chakraborty M.R. & Chatterjee N.C. (2008) Control of fusarium wilt of Solanum melongena by Trichoderma spp. Biologia Plantarum 52, 582-586.
44. Champagnat P., Figueredo G., Chalchat J.C., Carnat A.P. & Bessiere J.M. (2006) A study on the composition of commercial Vetiveria zizanioides oils from different geographical origins. Journal of Essential Oil Research 18, 416-422.
45. Chaparro J., Sheflin A.M., Manter D.K. & Vivanco J.M. (2012) Manipulating the soil microbiome to increase soil health and plant fertility. Biology and Fertility of Soils 48, 489-499.
46. Chaughan R.S., Nautiyal M.C., Tava A. & Mella M. (2012) Chemical composition of the volatile oil from the roots of Selinum tenuifolium Wall. Helvetica Chimica Acta 95, 780-787.
47. Chen F., Ro D.-K., Petri J., Gershenzon J., Bohlmann J., Pichersky E. & Tholl D. (2004) Characterization of a root-specific Arabidopsis terpene synthase responsible for the formation of the volatile monoterpene 1, 8-cineole. Plant Physiology 135, 1956-1966.
48. Chen F., Tholl D., Bohlmann J. & Pichersky E. (2011) The family of terpene synthases in plants: a mid-size family of genes for specialized metabolism that is highly diversified throughout the kingdom. The Plant Journal 66, 212-229.
49. Chen W.Y., Vermaak I. & Viljoen A. (2013) Camphor - a fumigant during the black death and a coveted fragrant wood in ancient Egypt and Babylon - a review. Molecules 18, 5434-5454.
50. Chin H.W. & Lindsay R.C. (1994) Mechanisms of formation of volatile sulfur-compounds following the action of cysteine sulfoxide lyases. Journal of Agricultural and Food Chemistry 42, 1529-1536.
51. Christensen L.P. & Brandt K. (2006) Bioactive polyacetylenes in food plants of the Apiaceae family: occurrence, bioactivity and analysis. Journal of Pharmaceutical and Biomedical Analysis 41, 683-693.
52. Chuankun X., Minghe M., Leming Z. & Keqin Z. (2004) Soil volatile fungistasis and volatile fungistatic compounds. Soil Biology and Biochemistry 36, 1997-2004.
53. Citron C.A., Gleitzmann J., Laurenzano G., Pukall R. & Dickschat J.S. (2012) Terpenoids are widespread in actinomycetes: a correlation of secondary metabolism and genome data. Chembiochem: A European Journal of Chemical Biology 13, 202-214.
54. Cleveland C.C. & Yavitt J.B. (1998) Microbial consumption of atmospheric isoprene in a temperate forest soil. Applied and Environmental Microbiology 64, 172-177.
55. Crespo E., Hordijk C.A., de Graaf R.M., Samudrala D., Cristescu S.M., Harren F.J.M. & Dam N.M. (2012) On-line detection of root-induced volatiles in Brassica nigra plants infested with Delia radicum L. root fly larvae. Phytochemistry 84, 68-77.
56. Crutcher F.K., Parich A., Schuhmacher R., Mukherjee P.K., Zeilinger S. & Kenerley C.M. (2013) A putative terpene cyclase, vir4, is responsible for the biosynthesis of volatile terpene compounds in the biocontrol fungus Trichoderma virens. Fungal Genetics and Biology 56, 67-77.
57. Cruz A.F., Hamel C., Yang C., Matsubara T., Gan Y., Singh A.K., ... Ishii T. (2012) Phytochemicals to suppress Fusarium head blight in wheat-chickpea rotation. Phytochemistry 78, 72-80.
58. von Dahl C.C., Havecker M., Schlogl R. & Baldwin I.T. (2006) Caterpillar-elicited methanol emission: a new signal in plant-herbivore interactions? Plant Journal 46, 948-960.
59. van Dam N.M. & Raaijmakers C.E. (2006) Local and systemic induced responses to cabbage rootfly larvae (Delia radicum) in two wild Brassica species. Chemoecology 16, 17-24.
60. van Dam N.M., Tytgat T.O.G. & Kirkegaard J.A. (2009) Root and shoot glucosinolates: a comparison of their diversity, function and interactions in natural and managed ecosystems. Phytochemistry Reviews 8, 171-186.
61. Davis T.S., Crippen T.L., Hofstetter R.W. & Tomberlin J.K. (2013) Microbial volatile emissions as insect semiochemicals. Journal of Chemical Ecology 39, 840-859.
62. D'Allessandro M., Erb M., Ton J., Brandenburg A., Karlen D., Zopfi J. & Turlings T.C.J. (2014) Volatiles produced by soil-borne endophytic bacteria increase plant pathogen resistance and affect tritrophic interactions. Plant, Cell & Environment 37, 813-826.
63. De Bok F.A.M., Janssen P.W.M., Bayjanov J.R., Sieuwerts S., Lommen A., van Hylckama Vlieg J.E.T. & Molenaar D. (2011) Volatile compound fingerprinting of mixed-culture fermentations. Applied Environmental Microbiology 77, 6233-6239.
64. De Cesare F., Mattia E.D., Pantalei S., Zampetti E., Vinciguerra V., Canganella F. & Macagnano A. (2011) Use of electronic nose technology to measure soil microbial activity through biogenic volatile organic compounds and gases release. Soil Biology and Biochemistry 43, 2094-2107.
65. De Moraes C.M., Lewis W.J., Pare P.W., Alborn H.T. & Tumlinson J.H. (1998) Herbivore-infested plants selectively attract parasitoids. Nature 393, 570-572.
66. Degelmann D.M., Kolb S., Dumont M., Murrell J.C. & Drake H.L. (2009) Enterobacteriaceae facilitate the anaerobic degradation of glucose by a forest soil. FEMS Microbiology and Ecology 68, 312-319.
67. Degenhardt J., Hiltpold I., Köllner T.G., Frey M., Gierl A., Gershenzon J., ... Turlings T.C.J. (2009) Restoring a maize root signal that attracts insect-killing nematodes to control a major pest. Proceedings of the National Academy of Sciences of the United States of America 106, 13213-13218.
68. Del Giudice L., Massardo D.R., Pontieri P., Bertea C.M., Mombello D., Carata E., ... Alifano P. (2008) The microbial community of Vetiver root and its involvement into essential oil biogenesis. Environmental Microbiology 10, 2824-2841.
69. Diamadopoulos E., Sakellariadis D. & Koukouraki E. (1998) The effect of humic acid on the transport of volatile chlorinated hydrocarbons in soil. Water Research 32, 3325-3330.
70. Dicke M. & Sabelis M.W. (1998) How plants obtain predatory mites as bodyguards. Netherlands Journal of Zoology 38, 148-165.
71. Dicke M., van Poecke R.M.P. & de Boer J.G. (2003) Inducible indirect defence of plants: from mechanisms to ecological functions. Basic and Applied Ecology 4, 27-42.
72. Dickschat J.S., Martens T., Brinkhoff T., Simon M. & Schulz S. (2005) Volatiles released by a Streptomyces species isolated from the North Sea. Chemical Biodiversity 2, 837-865.
73. Drew D.P., Rasmussen S.K., Avato P. & Simonsen H.T. (2012) A comparison of headspace solid-phase microextraction and classic hydrodistillation for the identification of volatile constituents from Thapsia spp. provides insights into guaianolide biosynthesis in Apiaceae. Phytochemical Analysis 23, 44-51.
74. Drew D.P., Dueholm B., Weitzel C., Zhang Y., Sensen C.W. & Simonsen H.T. (2013) Transcriptome analysis of Thapsia laciniata Rouy provides insights into terpenoid biosynthesis and diversity in Apiaceae. International Journal of Molecular Sciences 14, 9080-9098.
75. Drighton J. (2003) Fungi in Ecosystem Processes. Marcel Dekker, New York, NY.
76. Driouich A., Durand C. & Vicre-Gibouin M. (2007) Formation and separation of root border cells. Trends in Plant Science 12, 14-19.
77. Dudareva N., Negre F., Nagegowda D.A. & Orlova I. (2006) Plant volatiles: recent advances and future perspectives. Critical Reviews in Plant Sciences 25, 417-440.
78. Dunlevy J.D., Dennis E.G., Soole K.L., Perkins M.V., Davies C. & Boss P.K. (2013) A methyltransferase essential for the methoxypyrazine-derived flavour of wine. The Plant Journal 75, 606-617.
79. Effmert U., Kaldéras J., Warnke R. & Piechulla B. (2012) Volatile mediated interactions between bacteria and fungi in the soil. Journal of Chemical Ecology 38, 665-703.
80. Egamberdieva D., Kamilova F., Validov S., Gafurova L., Kucharova Z. & Lugtenberg B. (2008) High incidence of plant-growth stimulating bacteria associated with the rhizosphere of wheat grown on salinated soil Uzbekistan. Environmental Microbiology 10, 1-9.
81. Erb M., Balmer D., De Lange E.S., Von Merey G., Planchamp C., Robert C.A.M., ... Turlings T.C.J. (2011) Synergies and trade-offs between insect and pathogen resistance in maize leaves and roots. Plant, Cell & Environment 34, 1088-1103.
82. Falasconi M., Concina I., Gobbi E., Sberveglieri V., Pulvirenti A. & Sberveglieri G. (2012) Electronic nose for microbiological quality control of food products. International Journal of Electrochemistry Article ID 715763.
83. Falik O., Mordoch Y., Quansah L., Fait A. & Novoplansky A. (2011) Rumor has it: relay communication of stress cues in plants. PlosONE 6, 1-6.
84. Ferry A., Dugravot S., Delattre T., Christides J.P., Auger J., Bagneres A.G., Poinsot D. & Cortesero A.M. (2007) Identification of a widespread monomolecular odor differentially attractive to several Delia radicum ground-dwelling predators in the field. Journal of Chemical Ecology 33, 2064-2077.
85. Fiddaman D.J. & Rossall S. (1993) The production of antifungal volatiles by Bacillus subtilis. Journal of Applied Bacteriology 74, 119-126.
86. Fiddaman P.J. & Rossall S. (1994) Effect of substrate on the production of antifungal volatiles from Bacillus subtilis. Journal of Applied Microbiology 76, 395-405.
87. Fischer M.J., Meyer S., Claudel P., Bergdoll M. & Karst F. (2012) Identification of a lysine residue important for the catalytic activity of yeast farnesyl diphosphate synthase. Protein Journal 30, 334-339.
88. Fontana A., Reichelt M., Hempel S., Gershenzon J. & Unsicker S.B. (2009) The effects of arbuscular mycorrhizal fungi on direct and indirect defense metabolites of Plantago lanceolata L. Journal of Chemical Ecology 35, 833-843.
89. Foster R.C. (1988) Microenvironments of soil microorganisms. Biology and Fertility of Soils 6, 189-203.
90. Freire E.S., Campos V.P., Pinho R.S., Oliveira D.F., Faria M.R., Pohlit A.M., ... Silva J.R. (2012) Volatile substances produced by Fusarium oxysporum from coffee rhizosphere and other microbes affect Meloidogyne incognita and Arthrobotrys conoides. Journal of Nematology 44, 321-328.
91. Frey-Klett P., Garbayé J. & Tarkka M. (2007) The mycorrhiza helper bacteria revisited. New Phytologist 176, 22-36.
92. Frost C.J., Appel H.M., Carlson J.E., De Moraes C.M., Mescher M.C. & Schultz J.C. (2007) Within-plant signalling via volatiles overcomes vascular constraints on systemic signalling and primes responses against herbivores. Ecology Letters 10, 490-498.
93. Frost C.J., Mescher M.C., Dervinis C., Davis J.M., Carlson J.E. & De Moraes C.M. (2008) Priming defense genes and metabolites in hybrid poplar by the green leaf volatile cis-3-hexenyl acetate. New Phytologist 180, 722-733.
94. Galbally I.E. & Kirstine W. (2002) The production of methanol by flowering plants and the global cycle of methanol. Journal of Atmospheric Chemistry 43, 195-229.
95. Gang D.R., Wang J.H., Dudareva N., Nam K.H., Simon J.E., Lewinsohn E. & Pichersky E. (2001) An investigation of the storage and biosynthesis of phenylpropenes in sweet basil. Plant Physiology 125, 539-555.
96. Gans J., Wolinsky M. & Dunbar J. (2005) Computational improvements reveal great bacterial diversity and high metal toxicity in soil. Science 309, 1387-1390.
97. Gao Y., Jin Y.-J., Li H.-D. & Chen H.-J. (2005) Volatile organic compounds and their roles in bacteriostasis in five conifer species. Journal of Integrative Plant Biology 47, 499-507.
98. Gerber N.N. (1968) Geosmin, from microorganisms, is trans-1, 10-dimethyltrans-9-decalol. Tetrahedron Letters 25, 2971-2974.
99. Gfeller A., Laloux M., Barsics F., Kati D.E., Haubruge E., du Jardin P., etal. (2013) Characterization of volatile organic compounds emitted by barley (Hordeum vulgare L.) roots and their attractiveness to wireworms. Journal of Chemical Ecology 39, 1129-1139.
100. Gibbons J.G., Salichos L., Slot J.C., Rinker D.C., McGary K.L., King J.G., ... Rokas A. (2012) The evolutionary imprint of domestication on genome variation and function of the filamentous fungus Aspergillus oryzae. Current Biology 22, 1403-1409.
101. Giri B., Giang P.H., Kumari R., Prasad R. & Varma A. (2005) Microbial diversity in soils. In Microorganisms in Soils: Roles in Genesis and Functions (eds F. Buscot & F.A. Varma ), pp. 19-55. Springer-Verlag, Berlin, Heidelberg.
102. Gottschalk G. (1986) Bacterial Metabolism. Springer Verlag, Berlin, Heidelberg.
103. Gramms G. & Bergmann H. (2008) Role of plants in the vegetative and reproductive growth of saprobic basidiomycetous ground fungi. Microbial Ecology 56, 660-670.
104. Gray C.M., Monson R.K. & Fierer N. (2010) Emissions of volatile organic compounds during the decomposition of plant litter. Journal of Geophysical Research-Biogeosciences 115(G3), 2156-2202.
105. Grebner W., Stingl N.E., Oenel A., Mueller M.J. & Berger S. (2013) Lipoxygenase 6-dependent oxylipin synthesis in roots is required for abiotic and biotic stress resistance of Arabidopsis. Plant Physiology 161, 2159-2170.
106. Greenberg J.P., Asensio D., Turnipseed A., Guenther A.B., Karl T. & Gochis D. (2012) Contribution of leaf and needle litter to whole ecosystem BVOC fluxes. Atmospheric Environment 59, 302-311.
107. Großkopf R., Janssen P.H. & Liesack W. (1998) Diversity and structure of the methanogenic community in anoxic rice paddy soil microcosms as examined by cultivation and direct 16S rRNA gene sequence retrieval. Applied and Environmental Microbiology 64, 960-969.
108. Grube Andersen T.G., Nour-Eldin H.H., Fuller V.L., Olsen C.E., Burow M. & Halkier B.A. (2013) Integration of biosynthesis and long-distance transport establish organ-specific glucosinolate profiles in vegetative Arabidopsis. The Plant Cell 25, 3133-3145.
109. Gu Y.-Q., Mo M.-H., Zhou J.P., Zou C.-S. & Zhang K.-Q. (2007) Evaluation and identification of potential organic nematicidal volatiles from soil bacteria. Soil Biology and Biochemistry 39, 2567-2575.
110. Guenin S., Mareck A., Rayon C., Lamour R., Ndong Y.A., Domon J.M., ... Pelloux J. (2011) Identification of pectin methylesterase 3 as a basic pectin methylesterase isoform involved in adventitious rooting in Arabidopsis thaliana. New Phytologist 192, 114-126.
111. Gust B., Challis G.L., Fowler K., Kieser T. & Chater K.F. (2003) PCR-targeted Streptomyces gene replacement identifies a protein domain needed for biosynthesis of the sesquiterpene soil odor geosmin. Proceedings of the National Academy of Sciences of the United States of America 100, 1541-1546.
112. Gutensohn M., Klempien A., Kaminaga Y., Nagegowda D.A., Negre-Zakharov F., Huh J.H., ... Dudareva N. (2011) Role of aromatic aldehyde synthase in wounding/herbivory response and flower scent production in different Arabidopsis ecotypes. The Plant Journal 66, 591-602.
113. Halkier B.A. & Gershenzon J. (2006) Biology and biochemistry of glucosinolates. Annual Review of Plant Biology 57, 303-333.
114. Hamamoto S., Moldrup P., Kawamoto K. & Komatsu T. (2012) Organic matter fraction dependent model for predicting the gas diffusion coefficient in variably saturated soils. Vodose Zone Journal 11, doi: 10.2136/vzj2011.0065.
115. Havlik J., Budesinsky M., Kloucek P., Kokoska L., Valterova I., Vasickova S. & Zeleny V. (2009) Norsesquiterpene hydrocarbon, chemical composition and antimicrobial activity of Rhaponticum carthamoides root essential oil. Phytochemistry 70, 414-418.
116. Hayward S., Muncey R.J., James A.E., Halsall C.J. & Hewitt C.N. (2001) Monoterpene emissions from soil in a Sitka spruce forest. Atmospheric Environment 35, 4081-4087.
117. Hellen H., Hakola H., Pystynen K.-H., Rinne J. & Haapanala S. (2006) C-2-C-10 hydrocarbon emissions from a boreal wetland and forest floor. Biogeosciences 3, 167-174.
118. Henis Y., Gould J. & Alexander M. (1966) Detection and identification of bacteria by gas chromatography. Applied Microbiology 14, 513-524.
119. Hiltpold I. & Turlings T.C.J. (2008) Belowground chemical signaling in maize: when simplicity rhymes with efficiency. Journal of Chemical Ecology 34, 628-635.
120. Hiltpold I., Toepfer S., Kuhlmann U. & Turlings T.C.J. (2010) How maize root volatiles affect the efficacy of entomopathogenic nematodes in controlling the western corn rootworm? Chemoecology 20, 155-162.
121. Hinton A. Jr. & Hume M.E. (1995) Antibacterial activity of the metabolic by-products of a Veillonella species and Bacteroides fragilis. Anaerobe 1, 121-127.
122. Horiuchi J., Badri D.V., Kimball B.A., Negre F., Dudareva N., Paschke M.W. & Vivanco J.M. (2007) The floral volatile, methyl benzoate, from snapdragon (Antirrhinum majus) triggers phytotoxic effects in Arabidopsis thaliana. Planta 226, 1-10.
123. Huang J., Cardoza Y.J., Schmelz E.A., Raina R., Engelberth J. & Tumlinson J.H. (2003) Differential volatile emissions and salicylic acid levels from tobacco plants in response to different strains of Pseudomonas syringae. Planta 217, 767-775.
124. Huang M.S., Abel C., Sohrabi R., Petri J., Haupt I., Cosimano J., ... Tholl D. (2010) Variation of herbivore-induced volatile terpenes among Arabidopsis ecotypes depends on allelic differences and subcellular targeting of two terpene synthases, TPS02 and TPS03. Plant Physiology 153, 1293-1310.
125. Hubbell S.P., Wiemer D.F. & Adejare A. (1983) An antifungal terpenoid defends a neotropical tree (Hymenaea) against attack by fungus-growing ants (Atta). Oecologia 60, 321-327.
126. Hudson J.B., Graham E.A., Lam J. & Towers G.H.N. (1991) Ultraviolet-dependent biological activities of selected polyines of the Asteraceae. Planta Medica 57, 69-73.
127. Hueve K., Christ M.M., Kleist E., Uerlings R., Niinemets U., Walter A. & Wildt J. (2007) Simultaneous growth and emission measurements demonstrate an interactive control of methanol release by leaf expansion and stomata. Journal of Experimental Botany 58, 1783-1793.
128. Hung R., Lee S. & Bennet J.W. (2012) Arabidopsis thaliana as a model system for testing the effect of Trichoderma volatile organic compounds. Fungal Ecology 6, 19-26.
129. Hynes J., Müller C.T., Jones T.H. & Boddy L. (2007) Changes in volatile production during the course of fungal mycelial interactions between Hypholoma fasciculare and Resinicium bicolor. Journal of Chemical Ecology 33, 43-57.
130. Insam H. & Seewald M.S.A. (2010) Volatile organic compounds (VOCs) in soils. Biology and Fertility of Soils 46, 199-213.
131. Irmisch S., Krause S.T., Kunert G., Gershenzon J., Degenhardt J. & Kollner T.G. (2012) The organ-specific expression of terpene synthase genes contributes to the terpene hydrocarbon composition of chamomile essential oils. BMC Plant Biology 12, 84.
132. Isidorov V.A., Smolewska M. & Tyszkiewicz Z. (2010) Chemical composition of volatile and extractive compounds of pine and spruce leaf litter in the initial stages of decomposition. Biogeosciences 7, 2785-2794.
133. Izaguirre G., Hwang C.J., Krasner S.W. & McGuire M.J. (1982) Geosmin and 2-methylisoborneol from Cyanobacteria in three water supply systems. Applied Environmental Microbiology 43, 708-714.
134. Jackson R.B., Mooney H.A. & Schulze E.-D. (1997) A global budget for fine root biomass, surface area, and nutrient contents. Proceedings of the National Academy of Sciences USA 94, 7362-7366.
135. Jallow M.F.A., Dugassa-Gobena D. & Vidal S. (2008) Influence of an endophytic fungus on host plant selection by a polyphagous moth via volatile spectrum changes. Arthropod-Plant Interactions 2, 53-62.
136. Janson R.W. (1993) Monoterpene emissions from Scots pine and Norwegian spruce. Journal of Geophysical Research 98, 2839-2850.
137. Jassbi A.R., Zamanizadehnajari S. & Baldwin I.T. (2010) Phytotoxic volatiles in the roots and shoots of Artemisia tridentata as detected by headspace solid-phase microextraction and gas chromatographic-mass spectrometry analysis. Journal of Chemical Ecology 36, 1398-1407.
138. Joblin Y., Moularat S., Anton R., Bousta F., Orial G., Robine E., ... Bourouina T. (2010) Detection of moulds by volatile organic compounds: application to heritage conservation. International Biodeterioration and Biodegradation 64, 210-217.
139. Johnson S. & Nielsen U.N. (2012) Foraging in the dark - chemically mediated host plant location by belowground insect herbivores. Chemical Ecology 38, 604-614.
140. Jung S.J., Martinez-Medina A., Lopez-Raez J.A. & Pozo M.J. (2012) Mycorrhiza-induced resistance and priming of plant defenses. Journal of Chemical Ecology 38, 651-664.
141. Junker R.R. & Tholl D. (2013) Volatile organic compound mediated interactions at the plant-microbe interface. Journal of Chemical Ecology 39, 810-825.
142. 2? FEBS Letters 583, 3473-3477.
143. Kai M., Effmert U., Ber G. & Piechulla B. (2007) Volatiles of bacterial antagonists inhibit mycelial growth of the plant pathogen Rhizoctonia solani. Archives of Microbiology 187, 351-360.
144. Kai M., Haustein M., Molina F., Petri A., Scholz B. & Piechulla B. (2009) Bacterial volatiles and their action potential. Applied Microbiology and Biotechnology 81, 1001-1012.
145. Kai M., Crespo E., Cristescu S.M., Harren F.J.M. & Piechulla B. (2010) Serratia odorifera: analysis of volatile emission and biological impact of volatile compounds on Arabidopsis thaliana. Applied Microbiology and Biotechnology 88, 965-976.
146. Kai M., Vespermann A. & Piechulla B. (2008) The growth of fungi and Arabidopsis thaliana is influenced by bacterial volatiles. Plant Signal and Behaviour 7, 482-484.
147. Kaminaga Y., Schnepp J., Peel G., Kish C.M., Ben-Nissan G., Weiss D., ... Dudareva N. (2006) Plant phenylacetaldehyde synthase is a bifunctional homotetrameric enzyme that catalyzes phenylalanine decarboxylation and oxidation. Journal of Biological Chemistry 281, 23357-23366.
148. Kennedy G.G. (2003) Tomato, pests, parasitoids, and predators: tritrophic interactions involving the genus Lycopersicon. Annual Review of Entomology 48, 51-72.
149. Kesselmeier J. & Staudt M. (1999) Biogenic volatile organic compounds (VOC): an overview on emission, physiology and ecology. Journal of Atmospheric Chemistry 33, 23-88.
150. Ketola R.A., Kiuru J.T., Kotiaho T., Kitunen V. & Smolander A. (2011) Feasibility of membrane inlet mass spectrometry for on-site screening of volatile monoterpenes and monoterpene alcohols in forest soil atmosphere. Boreal Environment Research 16, 36-46.
151. Kleinheinz G.T., Bagley S.T., St John W.P., Rughani J.R. & McGinnis G.D. (1999) Characterization of alpha-pinene-degrading microorganisms and application to a bench-scale biofiltration system for VOC degradation. Archives of Environmental and Contamination Toxicology 37, 151-157.
152. Kljin N., Weerkamp A.H. & De Vos W.M. (1995) Detection and characterization of lactose-utilizing Lactococcus spp. in natural ecosystems. Applied and Environmental Microbiology 61, 788-792.
153. Kolb S., Knief C., Stubner S. & Conrad R. (2003) Quantitative detection of methanotrophs in soil by novel pmoA-targeted real-time PCR Assays. Applied and Environmental Microbiology 69, 2423-2429.
154. Koo H.J. & Gang D.R. (2012) Suites of terpene synthases explain differential terpenoid production in ginger and turmeric tissues. PLoS ONE 7, e51481.
155. Kögel-Knabner I. (2002) The macromolecular organic composition of plant and microbial residues as inputs to soil organic matter. Soil Biology and Biochemistry 34, 139-162.
156. Köllner T.G., Held M., Lenk C., Hiltpold I., Turlings T.C.J., Gershenzon J. & Degenhardt J. (2008a) A maize (E)-beta-caryophyllene synthase implicated in indirect defense responses against herbivores is not expressed in most American maize varieties. The Plant Cell 20, 482-494.
157. Köllner T.G., Schnee C. Li S., Svatos A., Schneider B., Gershenzon J.&Degenhardt J. (2008b) Protonation of a neutral (S)-beta-bisabolene intermediate is involved in (S)-beta-macrocarpene formation by the maize sesquiterpene synthases TPS6 and TPS11. Journal of Biological Chemistry 283, 20779-20788.
158. Körner E., von Dahl C.C., Bonaventure G. & Baldwin I.T. (2009) Pectin methylesterase NaPME1 contributes to the emission of methanol during insect herbivory and to the elicitation of defence responses in Nicotiana attenuata. Journal of Experimental Botany 60, 2631-2640.
159. Kramer R. & Abraham W.-R. (2012) Volatile sesquiterpenes from fungi: what are they good for? Phytochemistry Reviews 11, 15-37.
160. La Guerche S., Garcia C., Darriet P., Dubourdieu D. & Labarere J. (2004) Characterization of Penicillium species isolated from grape berries by their internal transcribed spacer (ITS1) sequences and by gas chromatography-mass spectrometry analysis of geosmin production. Current Microbiology 48, 405-411.
161. Lawo N.C., Weingart G.J.F., Schuhmacher R. & Forneck A. (2011) The volatile metabolome of grapevine roots: first insights into the metabolic response upon phylloxera attack. Plant Physiology and Biochemistry 49, 1059-1063.
162. Leff J.W. & Fierer N. (2008) Volatile organic compound (VOC) emissions from soil and litter samples. Soil Biology and Biochemistry 40, 1629-1636.
163. Lemfack M.C., Nickel J., Dunkel M., Preissner R. & Piechulla B. (2014) mVOC: a database of microbial volatiles. Nucleic Acid Research 42, D744-D748.
164. Lenschow D.H. (1995) Micrometeorological techniques for measuring atmosphere-biosphere trace gas exchange. In Biogenic Trace Gases: Measuring Emissions from Soil and Water (eds P.A. Matson & R.C. Harriss ), Blackwell Science, Oxford.
165. Lin C., Owen S.M. & Peñuelas J. (2007) Volatile organic compounds in the roots and rhizosphere of Pinus spp. Soil Biology & Biochemistry 39, 951-960.
166. Linton C.J. & Wright S.J.L. (1993) Volatile organic compounds: microbiological aspects and some technological implications. Journal of Applied Bacteriology 75, 1-12.
167. Llusià J., Peñuelas J., Guenther A. & Rapparini F. (2013) Seasonal variations in terpene emission factors of dominant species in four ecosystems in NE ESP. Atmospheric Environment 70, 149-158.
168. Lui L., Vikram A., Hamzehzarghani H. & Kushalappa A.C. (2005) Discrimination of three fungal diseases of potato tubers based on volatile metabolic profiles developed using GC/MS. Potato Research 48, 85-96.
169. Márquez L.M., Redman R.S., Rodriguez R.J. & Roossinck M.J. (2007) A virus in a fungus in a plant: three-way symbiosis required for thermal tolerance. Science 315, 513-515.
170. Mackie A.E. & Weatley R.E. (1999) Effects and incidence of volatile organic compound interactions between soil bacterial and fungal isolates. Soil Biology and Biochemistry 31, 375-385.
171. McKee N. & Robinson P.M. (1988) Production of volatile inhibitors of germination and hyphal extension by Geotrichum candidum. Transactions of the British Mycological Society 91, 157-190.
172. McNeal K.S. & Herbert B.E. (2009) Volatile organic metabolites as indicators of soil microbial activity and community composition shifts. Soil Science Society of America Journal 73, 579-588.
173. Matarese F., Scalabrelli G. & D'Onofrio C. (2013) Analysis of the expression of terpene synthase genes in relation to aroma content in two aromatic Vitis vinifera varieties. Functional Plant Biology 40, 552-565.
174. Mattheis J.P. & Roberts R.G. (1992) Identification of geosmin as a volatile metabolite of Penicillium expansum. Applied Environmental Microbiology 58, 3170-3172.
175. Medsker L.L., Jenkins D. & Thomas J.F. (1968) Odorous compounds in natural waters. An earthy smelling compound associated with blue-green algae and actinomycetes. Environmental Science and Technology 2, 461-464.
176. Medsker L.L., Jenkins D., Thomas J.F. & Koch C. (1969) Odorous compounds in natural waters. 2-Exohydroxy-2-methylbornane, the major odorous compound produced by several actinomycetes. Environmental Science and Technology 3, 476-477.
177. Mendes R., Garbeva P. & Raaijmakers J.M. (2013) The rhizosphere microbiome: significance of plant beneficial, plant pathogenic, and human pathogenic microorganisms. FEMS Microbiology Reviews 37, 634-663.
178. Minerdi D., Bossi S., Gullino M.L. & Garibalidi A. (2009) Volatile organic compounds: a potential direct long-distance mechanism for antagonistic action of Fusarium oxysporum strain MSA 35. Environmental Microbiology 11, 844-854.
179. Minerdi D., Bossi S., Maffei M.E., Gullino M.L. & Garibaldi A. (2010) Fusarium oxysporum and its bacterial consortium promote lettuce growth and expansin a gene expression through microbial volatile organic compound (MVOC) emission. FEMS Microbiological Ecology 76, 342-351.
180. Minto R.E. & Blacklock B.J. (2008) Biosynthesis and function of polyacetylenes and allied natural products. Progress in Lipid Research 47, 233-306.
181. Misra G., Pavlostathis S.G., Perdue E.M. & Araujo R. (1996) Aerobic biodegradation of selected monoterpenes. Applied Microbiology and Biotechnology 45, 831-838.
182. Moldrup P., Olesen T., Schjonning P., Yamaguchi T. & Rolston D.E. (2000) Predicting the gas diffusion coefficient in undisturbed soil from soil water characteristics. Soil Science Society of America Journal 64, 94-100.
183. Moore-Landecker E. & Stotzky G. (1972) Inhibition of fungal growth and sporulation by volatile metabolites from bacteria. Canadian Journal of Microbiology 18, 957-962.
184. Mucciarelli M., Camusso W., Maffei M., Panicco P. & Bicchi C. (2007) Volatile terpenoids of endophyte-free and infected peppermint (Mentha piperita L.): chemical partitioning of a symbiosis. Microbiological Ecology 54, 685-696.
185. Müller A., Faubert P., Hagen M., Zu Castell W., Polle A., Schnitzler J.P. & Rosenkranz M. (2013) Volatile profiles of fungi - chemotyping of species and ecological functions. Fungal Genetics and Biology 54, 25-33.
186. Nakano C., Horinouchi S. & Ohnishi Y. (2011) Characterization of a novel sesquiterpene cyclase involved in (+)-caryolan-1-ol biosynthesis in Streptomyces griseus. Journal of Biological Chemistry 286, 27980-27987.
187. Nazaries L., Murrell J.C., Millard P., Baggs L. & Singh B.K. (2013) Methane, microbes and models: fundamental understanding of the soil methane cycle for future predictions. Environmental Microbiology 15, 2395-2417.
188. Naznin H.A., Kimura M., Mizyawa M. & Hyakumachi M. (2013) Analysis of volatile organic compounds emitted by plant growth-promoting fungus Phoma sp. GS8-3 for growth promotion effects on tobacco. Microbes and Environment 28, 42-49.
189. Neveu N., Grandgirard J., Nenon J.P. & Cortesero A.M. (2002) Systemic release of herbivore induced plant volatiles by turnips infested by concealed root-feeding larvae Delia radicum L. Journal of Chemical Ecology 28, 1717-1732.
190. Nordlander G., Eidmann H.H., Jacobsson U., Nordenhem H. & Sjödin K. (1986) Orientation of the pine weevil Hylobius abietis to underground sources of host volatiles. Entomologia Experimentalis et Applicata 41, 91-100.
191. Ntalli N.G., Manconi F., Leonti M., Maxia A. & Caboni P. (2011) Aliphatic ketones from Ruta chalepensis (Rutaceae) induce paralysis on root knot nematodes. Journal of Agricultural and Food Chemistry 59, 7098-7103.
192. Oderbolz D.C., Aksoyoglu S., Keller J., Barmpadimos I., Steinbrecher R., Skjøth C.A., etal. (2013) A comprehensive emission inventory of biogenic volatile organic compounds in Europe: improved seasonality and land-cover. Atmospheric Chemistry and Physics 13, 1689-1712.
193. Oikawa P.Y., Giebel B.M., Sternberg L.D.S.L.O.R., Li L., Timko M.P., Swart P.K., ... Lerdau M.T. (2011) Leaf and root pectin methylesterase activity and C-13/C-12 stable isotopic ratio measurements of methanol emissions give insight into methanol production in Lycopersicon esculentum. New Phytologist 191, 1031-1040.
194. Olson D.M., Davis R.F., Wäckers F.L., Rains G.C. & Potter T. (2008) Plant-herbivore-carnivore interactions in cotton, Gossypium hirsutum: linking belowground and aboveground. Journal of Chemical Ecology 34, 1341-1348.
195. Owen S.M., Clark S., Pompe M. & Semple K.T. (2007) Biogenic volatile organic compounds as potential carbon sources for microbial communities in soil from the rhizosphere of Populus tremula. FEMS Microbiology Letters 268, 34-39.
196. Palin R. & Geitmann A. (2012) The role of pectin in plant morphogenesis. Bio Systems 109, 397-402.
197. Palma R., Mutis A., Manosalva L., Ceballos R. & Quiroz A. (2012) Behavioral and electrophysiological responses of Hylastinus obscurus to volatiles released from the roots of Trifolium pratense L. Journal of Soil Science and Plant Nutrition 12, 183-193.
198. Pegoraro E., Rey A., Abrell L., Vanharen J. & Lin G.H. (2006) Drought effect on isoprene production and consumption in biosphere 2 tropical rainforest. Global Change Biology 12, 456-469.
199. Peñuelas J. & Llusià J. (2001) The complexity of factors driving volatile organic compound emissions by plants. Biologia Plantarum 44, 481-487.
200. Peñuelas J. & Staudt M. (2010) BVOCS and global chance. Trends in Plant Science 15, 133-144.
201. Peñuelas J., Filella I., Stefanescu C. & Llusià J. (2005) Caterpillars of Euphydryas aurinia (Lepidoptera: Nymphalidae) feeding on Succisa pratensis leaves induce large foliar emissions of methanol. New Phytologist 167, 851-857.
202. Petersen L.W., Rolston D.E., Moldrup P. & Yamaguchi T. (1994) Volatile organic vapor diffusion and adsorption in soils. Journal of Environmental Quality 23, 799-805.
203. Pichersky E. & Gershenzon J. (2002) The formation and function of plant volatiles: perfumes for pollinator attraction and defence. Current Opinion in Plant Biology 5, 237-243.
204. Pickel B., Drew D.P., Manczak T., Weitzel C., Simonsen H.T. & Ro D.K. (2012) Identification and characterization of a kunzeaol synthase from Thapsia garganica: implications for the biosynthesis of the pharmaceutical thapsigargin. Biochemical Journal 448, 261-271.
205. Pierre P.S., Jansen J.J., Hordijk C.A., van Dam N.M., Cortesero A.-M. & Dugravot S. (2011) Differences in volatile profiles of turnip plants subjected to single and dual herbivory above- and belowground. Journal of Chemical Ecology 37, 368-377.
206. Pineda A., Soler R., Weldegerbis B.T., Shimwela M.M., van Loon J.J.A. & Dicke M. (2013) Non-pathogenic rhizobacteria interfere with the attraction of parasitoids to aphid-induced plant volatiles via jasmonic acid signalling. Plant, Cell & Environment 36, 393-404.
207. Prithiviraj B., Vikram A., Kushalappa A.C. & Yaylayan V. (2004) Volatile metabolite profiling for the discrimination of onion bulbs infected by Erwinia carotovora ssp. carotovora, Fusarium oxysporum and Botrytis allii. European Journal of Plant Pathology 110, 371-377.
208. Prost I., Dhondt S., Rothe G., Vicente J., Rodriguez M.J., Kift N., ... Fournier J. (2005) Evaluation of the antimicrobial activities of plant oxylipins supports their involvement in defense against pathogens. Plant Physiology 139, 1902-1913.
209. Pyle B.W., Tran H.T., Pickel B., Haslam T.M., Gao Z., MacNevin G., ... Ro D.-K. (2012) Enzymatic synthesis of valerena-4, 7(11)-diene by a unique sesquiterpene synthase from the valerian plant (Valeriana officinalis). FEBS Journal 279, 3136-3146.
210. Qualley A.V., Widhalm J.R., Adebesin F., Kish C.M. & Dudareva N. (2012) Completion of the core beta-oxidative pathway of benzoic acid biosynthesis in plants. Proceedings of the National Academy of Sciences of the United States of America 109, 16383-16388.
211. Raal A., Arak E., Orav A., Kailas T. & Muurisepp M. (2008) Variation in the composition of the essential oil of commercial Valeriana officinalis L. roots from different countries. Journal of Essential Oil Research 20, 524-529.
212. Ramirez K.S., Lauber C.L. & Fierer N. (2009) Microbial consumption and production of volatile organic compounds at the soil-litter interface. Biogeochemistry 99, 97-107.
213. Rapparini F., Llusià J. & Peñuelas J. (2007) Effect of arbuscular mycorrhizal (AM) colonization on terpene emission and content of Artemisia annua L. Plant Biology 10, 108-122.
214. Rasmann S. & Turlings T.C.J. (2007) Simultaneous feeding by aboveground and belowground herbivores attenuates plant-mediated attraction of their respective natural enemies. Ecology Letters 10, 926-936.
215. Rasmann S. & Turlings T.C.J. (2008) First insights into specificity of belowground tritrophic interactions. Oikos 117, 362-369.
216. Rasmann S., Köllner T.G., Degenhardt J., Hiltpold I., Töpfer S., Kuhlmann U., ... Turlings T.C.J. (2005) Recruitment of entomopathogenic nematodes by insect-damaged maize roots. Nature 434, 732-737.
217. Rasmann S., Erwin A.C., Halitschke R. & Agrawal A.A. (2011) Direct and indirect root defences of milkweed (Asclepias syriaca): trophic cascades, trade-offs and novel methods for studying subterranean herbivory. Journal of Ecology 99, 16-25.
218. 2 released by root respiration fades on the background of root exudates. Basic and Applied Ecology 9, 568-576.
219. Rigamonte T.A., Pylro V.S. & Duarte G.F. (2010) The role of mycorrhization helper bacteria in the establishment and action of ectomcyorrhizae associations. Brazilian Journal of Microbiology 41, 832-840.
220. Rinnan R., Gierth D., Bilde M., Rosenørn T. & Michelsen A. (2013) Off-season biogenic volatile organic compound emissions from heath mesocosms: responses to vegetation cutting. Frontiers in Microbiology 4, 1-10.
221. Rivero I., Juarez K., Zuluaga M., Bye R. & Mata R. (2012) Quantitative HPLC method for determining two of the major active phthalides from Ligusticum porteri roots. Journal of AOAC International 95, 84-91.
222. Ro D.K., Ehlting J., Keeling C.I., Lin R., Mattheus N. & Bohlmann J. (2006) Microarray expression profiling and functional characterization of AtTPS genes: duplicated Arabidopsis thaliana sesquiterpene synthase genes At4g13280 and At4g13300 encode root-specific and wound-inducible (Z)-γ-bisabolene synthases. Archives of Biochemistry and Biophysics 448, 104-116.
223. Robert C.A.M., Erb M., Duployer M., Zwahlen C., Doyen G.R. & Turlings T.C.J. (2012) Herbivore-induced plant volatiles mediate host selection by a root herbivore. New Phytologist 194, 1061-1069.
224. Rolston D.E. & Møldrup P. (2012) Gas transport in soils. In Handbook of Soil Sciences, Properties and Processes (eds P.M. Huang, Y. Li & M.E. Sumner ), CRC Press, Boca Raton, FL.
225. van Roon A., Parsons J.R., Te Kloeze A.-M. & Govers H.A.J. (2005a) Fate and transport of monoterpenes through soils. Part I. Prediction of temperature dependent soil fate model input-parameters. Chemosphere 61, 599-609.
226. van Roon A., Parsons J.R., Krap L. & Govers H.A.J. (2005b) Fate and transport of monoterpenes through soils. Part II: calculation of the effect of soil temperature, water saturation and organic carbon content. Chemosphere 61, 129-138.
227. Rowan D.D. (2011) Volatile metabolites. Metabolites 1, 41-63.
228. Ruiz J., Bilbao R. & Murillo M.B. (1998) Adsorption of different VOC onto soil minerals from gas phase: influence of mineral, type of VOC, and air humidity. Environmental Science & Technology 32, 1079-1084.
229. Ryan R.P. & Down J.M. (2008) Diffusible signals and interspecies communication in bacteria. Microbiology (Reading, England) 154, 1845-1858.
230. Ryu C.M., Farag M.A., Hu C.H., Reddy M.S., Wie H.X., Paré P.W. & Kloepper J.W. (2003) Bacterial volatiles promote growth in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America 100, 4927-4932.
231. Sayers E.W., Barrett T., Benson D.A., Bolton E., Bryant S.H., Canese K., Chetvernin V., Church D.M., Dicuccio M., Federhen S., etal. (2010) Database resources of the National Center for Biotechnology Information. Nucleic Acids Research 1, 5-16.
232. Scanlon B.R., Nicot J.P. & Massmann J.W. (2002) Soil gas movement in unsaturated systems. In Soil Physics Companion (ed. A.W. Warrick ), CRC Press, Boca Raton, FL.
233. Schade G.W. & Custer T.G. (2004) OVOC emissions from agricultural soil in northern Germany during the 2003 European heat wave. Atmospheric Environment 38, 6105-6114.
234. Schade G.W. & Goldstein A.H. (2001) Fluxes of oxygenated volatile organic compounds from a ponderosa pine plantation. Journal of Geophysical Research-Atmospheres 106, 3111-3123.
235. Schalchli H., Hormazabal E., Becerra J., Birkett M., Alvear M., Vidal J. & Quiroz A. (2011) Antifungal activity of volatile metabolites emitted by mycelial cultures of saprophytic fungi. Chemistry and Ecology 27, 503-513.
236. Schaller A. & Stintzi A. (2009) Enzymes in jasmonate biosynthesis - structure, function, regulation. Phytochemistry 70, 1532-1538.
237. van Schie C.C.N., Haring M.A. & Schuurink R.C. (2007) Tomato linalool synthase is induced in trichomes by jasmonic acid. Plant Molecular Biology 64, 251-263.
238. Schulz S. & Dickschat J.S. (2007) Bacterial volatiles: the smell of small organisms. Natural Products Report 24, 814-842.
239. Seljasen R., Vogt G., Olsen E., Lea P., Hogetveit L.A., Taje T., ... Bengtsson G.B. (2013) Influence of field attack by carrot psyllid (Trioza apicalis Forster) on sensory quality, antioxidant capacity and content of terpenes, falcarindiol and 6-methoxymellein of carrots (Daucus carota L.). Journal of Agricultural and Food Chemistry 61, 2831-2838.
240. Sellami I.H., Bettaieb I., Bourgou S., Dahmani R., Limam F. & Marzouk B. (2012) Essential oil and aroma composition of leaves, stalks and roots of celery (Apium graveolens var. dulce) from Tunisia. Journal of Essential Oil Research 24, 513-521.
241. Senalik D. & Simon P.W. (1986) Relationship between oil ducts and volatile terpenoid content in carrot roots. American Journal of Botany 73, 60-63.
242. Sengupta P., Chou J.H. & Bargmann C.L. (1996) odr-10 encodes a seven transmembrane domain olfactory receptor required for responses to the odorant diacetyl. Cell 84, 578-587.
243. Seo H.S., Song J.T., Cheong J.J., Lee Y.H., Lee Y.W., Hwang I., ... Choi Y.D. (2001) Jasmonic acid carboxyl methyltransferase: a key enzyme for jasmonate-regulated plant responses. Proceedings of the National Academy of Sciences of the United States of America 98, 4788-4793.
244. Sharma S., Madan M. & Vasudevan P. (1997) Biology and applications of mycorrhizal fungi. Microbiologia (Madrid, ESP) 13, 427-436.
245. Shimizu Y., Imayoshi Y., Kato M., Maeda K., Iwabuchi H. & Shimomura K. (2011) New eudesmane-type sesquiterpenoids and other volatile constituents from the roots of Gynura bicolor DC. Flavour and Fragrance Journal 26, 55-64.
246. Smith L.D.S. (1975) Common mesophilic anaerobes, including Clostridium botulinum and Clostridium tetani, in 21 soil specimens. Applied Microbiology 29, 590-594.
247. Smolander A., Ketola R.A., Kotiaho T., Kanerva S., Suominen K. & Kitunen V. (2006) Volatile monoterpenes in soil atmosphere under birch and conifers: effects on soil N transformations. Soil Biology and Biochemistry 38, 3436-3442.
248. Sniegowski P.D., Dombrowski P.G. & Fingerman E. (2002) Saccharomyces cerevisiae and Saccharomyces paradoxus coexist in a natural woodland site in North America and display different levels of reproductive isolation from European conspecifics. FEMS Yeast Research 1, 299-306.
249. Spinelli F., Cellini A., Vanneste J.L., Rodriguez-Estrada M.T., Costa G., Savioli S., ... Cristescu S.M. (2012) Emission of volatile compounds by Erwinia amylovora: biological activity in vitro and possible exploitation for bacterial identification. Trees 26, 141-152.
250. Splivallo R., Novero M., Bertea C.M., Bossi S. & Bonfante P. (2007) Truffle volatiles inhibit growth and induce an oxidative burst in Arabidopsis thaliana. New Phytologist 175, 417-424.
251. Sprecher E. & Hanssen H.P. (1983) Distribution and strain-dependent formation of volatile metabolites in the genus Ceratocystis. Antonie van Leeuwenhoek 49, 493-499.
252. Stahl P.D. & Parkin T.B. (1996) Microbial production of volatile organic compounds in soil microcosms. Soil Science Society of America Journal 60, 821-828.
253. Statham Thorn R.M. & Greenman J. (2012) Topical review: microbial volatile compounds in health and disease conditions. Journal of Breath Research 6, 1-25.
254. Steeghs M., Bais H.P., de Gouw J., Goldan P., Kuster W., Northway M., ... Vivanco J.M. (2004) Proton-transfer-reaction mass spectrometry as a new tool for real time analysis of root-secreted volatile organic compounds in Arabidopsis. Plant Physiology 135, 47-58.
255. Stotzky G. & Schenck S. (1976) Volatile organic compounds and microorganisms. CRC Critical Reviews in Microbiology 4, 333-382.
256. Strobel G.A., Dirkse E., Sears J. & Markworth C. (2001) Volatile antimicrobials from Muscodor albus, a novel endophytic fungus. Mirobiology (Reading, England) 147, 2943-2950.
257. Sy A., Timmers A.C.J., Knief C. & Vorholt J.A. (2005) Methylotrophic metabolism is advantageous for Methylobacterium extorquens during colonization of Medicago truncatula under competitive conditions. Applied and Environmental Microbiology 71, 7245-7252.
258. Szarka S., Hethelyi E., Lemberkovics E., Kuzovkina I.N., Banyai P. & Szoke E. (2006) GC and GC-MS studies on the essential oil and thiophenes from Tagetes patula L. Chromatographia 63, S67-S73.
259. Tapia T., Perich F., Pardo F., Palma G. & Quiroz A. (2007) Identification of volatiles from differently aged red clover (Trifolium pratense) root extracts and behavioural responses of clover root borer (Hylastinus obscurus) (Marsham) (Coleoptera: Scolytidae) to them. Biochemical Systematics and Ecology 35, 61-67.
260. Tarkka M.T. & Piechulla B. (2007) Aromatic weapons: truffles attack plants by the production of volatiles. New Phytologist 175, 381-383.
261. Tholl D. & Lee S. (2011) Terpene specialized metabolism in Arabidopsis thaliana. The Arabidopsis Book 9, e0143.
262. Tholl D., Chen F., Petri J., Gershenzon J. & Pichersky E. (2005) Two sesquiterpene synthases are responsible for the complex mixture of sesquiterpenes emitted from Arabidopsis flowers. The Plant Journal 42, 757-771.
263. Tieman D., Taylor M., Schauer N., Fernie A.R., Hanson A.D. & Klee H.J. (2006) Tomato aromatic amino acid decarboxylases participate in synthesis of the flavor volatiles 2-phenylethanol and 2-phenylacetaldehyde. Proceedings of the National Academy of Sciences of the United States of America 103, 8287-8292.
264. van Tol R.W.H.M., van der Sommen A.T.C., Boff M.I.C., van Bezooijen J., Sabelis M.W. & Smits P.H. (2001) Plants protect their roots by alerting the enemies of grubs. Ecology Letters 4, 292-294.
265. Tracey R.P., Britz T.J., Van Vuuren H.J.J. & Lategan P.M. (1986) Gas chromatographic determination of volatile metabolites formed by Obesumbacterium proteus and Hafnia species. Journal of the Institute of Brewing 92, 446-451.
266. Turlings T.C.J., Hiltpold I. & Rasmann S. (2012) The importance of root-produced volatiles as foraging cues for entomopathogenic nematodes. Plant and Soil 358, 47-56.
267. Turner A.P.F. & Magan N. (2004) Electronic noses and disease diagnostics. Nature Reviews. Microbiology 2, 161-166.
268. Tytgat T.O.G., Verhoeven K.J.F., Jansen J.J., Raaijmakers C.E., Bakx-Schotman T., McIntyre L.M., ... van Dam N.M. (2013) Plants know where it hurts: root and shoot jasmonic acid induction elicit differential responses in Brassica olracea. PlosONE 8, e65502.
269. Uteau D., Pagenkemper S.K., Peth S. & Horn R. (2013) Root and time dependent soil structure formation and its influence on gas transport in the subsoil. Soil & Tillage Research 132, 69-76.
270. Van Leur H., Raaijmakers C.E. & Van Dam N.M. (2008) Reciprocal interactions between the cabbage root fly (Delia radicum) and two glucosinolate phenotypes of Barbarea vulgaris. Entomologia Experimentalis et Applicata 128, 312-322.
271. Vaughan M.M., Wang Q., Webster F.X., Kiemle D., Hong Y.J., Tantillo D.J., ... Tholl D. (2013) Formation of the unusual semivolatile diterpene rhizathalene by the Arabidopsis class I terpene synthase TPS08 in the root stele is involved in defense against belowground herbivory. The Plant Cell 25, 1108-1125.
272. Vespermann A., Kai M. & Piechulla B. (2007) Rhizobacterial volatiles affect the growth of fungi and Arabidopsis thaliana. Applied Environmental Microbiology 73, 5639-5641.
273. Viana F.A., Andrade-Neto M., Pouliquen Y.B.M. & Lucien V.G. (2002) Chemical composition of the essential oil from roots of Philodendron acutatum Schott. Journal of Essential Oil Research 14, 172-174.
274. Viles A.L. & Reese R.N. (1996) Allelopathic potential of Echinacea angustifolia DC. Environmental and Experimental Botany 36, 39-43.
275. Von Reuss S., Kai M., Piechulla B. & Francke W. (2010) Octamethylbicyclo (3.2.1) octadienes from Serratia odorifera. Angewandte Chemie 22, 2053-2054.
276. Walter M.H., Floss D.S. & Strack D. (2010) Apocarotenoids: hormones, mycorrhizal metabolites and aroma volatiles. Planta 232, 1-17.
277. Wang Y., Wang H., Ma Z., Li Q., Shi L. & Xu F. (2010) Review of response mechanism of soil respiration to rainfall. Chinese Journal of Plant Ecology 34, 601-610.
278. Warneke C., Karl T., Judmaier H., Hansel A., Jordan A., Lindinger W., etal. (1999) Acetone, methanol, and other partially oxidized volatile organic emissions from dead plant matter by abiological processes: significance for atmospheric HOx chemistry. Global Biogeochemical Cycles 13, 9-17.
279. Watson S.B. (2004) Aquatic taste and odour: a primary signal of drinking water integrity. Journal of Toxicology and Environmental Health 67, 1779-1795.
280. Weise T., Kai M., Gummesson A., Troeger A., Von Reuß S., Piepenborn S., ... Piechulla B. (2012) Volatile organic compounds produced by the phytopathogenic bacterium Xanthomonas campestris pv. vesicatoria 85-10. Beilstein Journal of Organic Chemistry 8, 579-596.
281. Weise T., Thürmer A., Brady S., Kai M., Daniel R., Gottschalk G. & Piechulla B. (2014) VOC emission of various Serratia species and isolates and genome analysis of Serratia plymuthica 4Rx13. FEMS Microbiology Letters 352, 45-53.
282. Weissteiner S., Huetteroth W., Kollmann M., Weßbecker B., Romani R., Schachtner J. & Schütz S. (2012) Cockchafer larvae smell host root scents in soi. PloS ONE, e45827.
283. Wenke K., Kai M. & Piechulla B. (2010) Belowground volatiles facilitate interactions between plant roots and soil organisms. Planta 231, 499-506.
284. Wenke K., Weise T., Warnke R., Valverde C., Wanke D., Kai M. & Piechulla B. (2012) Bacterial volatiles mediating information between bacteria and plants. In Biocommunication in Plants (eds G. Witzany & F. Balsuka ), pp. 327-347. Springer-Verlag, Heidelberg.
285. Wheatley R.E. (2002) The consequences of volatile organic compounds mediated bacterial and fungal interactions. Antonie van Leeuwenhoek 81, 357-364.
286. Williams W.G., Kennedy G.G., Yamamoto R.T., Thacker J.D. & Bordner J. (1980) 2-Tridecanone - a naturally occurring insecticide from the wild tomato Lycopersicon hirsutum f. glabrum. Science 207, 888-889.
287. Wong P.S.H., Cooks R.G., Cisper M.E. & Hemberger P.H. (1995) Online, in-situ analysis with membrane introduction MS. Environmental Science & Technology 29, A215-A218.
288. Wright S.J. & Thompson R.J. (1985) Bacillus volatiles antagonize cyanobacteria. FEMS Microbiology Letters 30, 263-267.
289. Wrigley D.M. (2004) Inhibition of Clostridium perfringens sporulation by Bacteroides fragilis and short-chain fatty acids. Anaerobe 10, 295-300.
290. Yamada Y., Cane D.F. & Ikeda H. (2012) Diversity and analysis of bacterial terpene synthases. In Methods in Enzymology (ed. D.A. Hopwood ), pp. 123-162. Elsevier, Academic Press, Amsterdam.
291. Yanagida F., Chen Y.-S. & Shinohara T. (2006) Searching for bacteriocin-producing lactic acid bacteria in soil. Journal of General and Applied Microbiology 52, 21-28.
292. Yeo Y.S., Nybo S.E., Chittiboyina A.G., Weerasooriya A.D., Wang Y.H., Gongora-Castillo E., ... Chappell J. (2013) Functional identification of valerena-1, 10-diene synthase, a terpene synthase catalyzing a unique chemical cascade in the biosynthesis of biologically active sesquiterpenes in Valeriana officinalis. Journal of Biological Chemistry 288, 3163-3173.
293. Yu G., Nguyen T.T.H., Guo Y., Schauvinhold I., Auldridge M.E., Bhuiyan N., ... Pichersky E. (2010) Enzymatic functions of wild tomato methylketone synthases 1 and 2. Plant Physiology 154, 67-77.
294. Zak J.C., Willig M.R., Moorhead D.L. & Wildmann H.G. (1994) Functional diversity of microbial communities: a quantitative approach. Soil Biology and Biochemistry 26, 1101-1108.
295. Zhang H., Kim M.-S., Krishnamachari V., Payton P., Sun Y., Grimson M., ... Pare P.W. (2007) Rhizobacterial volatile emissions regulate auxin homeostasis and cell expansion in Arabidopsis. Planta 226, 839-851.
296. Zhu J., Bean H.D., Wargo M.J., Leclair L.W. & Hill J.E. (2013) Detecting bacterial lung infections: in vivo evaluation of in vitro volatile fingerprints. Journal of Breath Research 7, 1-7.
297. Zou C.-S., Mo M.-H., Gu Y.-Q., Zhou J.-P. & Zhang K.-Q. (2007) Possible contributions of volatile producing bacteria to soil fungistasis. Soil Biology and Biochemistry 39, 2371-2379.