Microbial consumption and production of volatile organic compounds at the soil-litter interface

Biogeochemistry

Volumn 99, Issue 1, 2010, Pages 97-107

  Ramirez, Kelly S ^a   Lauber, Christian L ^a   Fierer, Noah ^a  

^a UNIVERSITY OF COLORADO   (United States)

Author keywords

Litter decomposition; Microbial ecology; Plant soil interactions; Soil CO2 dynamics; VOC; Volatile organic compounds

Indexed keywords

ATMOSPHERE-BIOSPHERE INTERACTION; ATMOSPHERIC CHEMISTRY; CARBON DIOXIDE; CARBON EMISSION; CARBON FLUX; CONIFEROUS TREE; DECOMPOSITION; DICOTYLEDON; ECOLOGICAL IMPACT; INCUBATION; LITTER; MASS SPECTROMETRY; MICROBIAL ACTIVITY; MICROBIAL COMMUNITY; MICROBIAL ECOLOGY; MINERALIZATION; RESPIRATION; SOIL DYNAMICS; SOIL NUTRIENT; SOIL-VEGETATION INTERACTION; VOLATILE ORGANIC COMPOUND;

ACER; ACER RUBRUM; BACTERIA (MICROORGANISMS); PINUS TAEDA;

EID: 77954028456     PISSN: 01682563     EISSN: 1573515X     Source Type: Journal    
DOI: 10.1007/s10533-009-9393-x     Document Type: Article

References (43)

1. Amaral JA, Knowles R (1997) Inhibition of methane consumption in forest soils and pure cultures of methanotrophs by aqueous forest soil extracts. Soil Biol Biochem 29: 1713-1720.
2. Amaral JA, Knowles R (1998) Inhibition of methane consumption in forest soils by monoterpenes. J Chem Ecol 24: 723-734.
3. Asensio D, Penuelas J, Filella I, Llusia J (2007) On-line screening of soil VOCs exchange responses to moisture, temperature and root presence. Plant Soil 291: 249-261.
4. Bunge M, Araghipour N, Mikoviny T, Dunkl J, Schnitzhofer R, Hansel A, Schinner F, Wisthaler A, Margesin R, Mark TD (2008) On-line monitoring of microbial volatile metabolites by proton transfer reaction-mass spectrometry. Appl Environ Microbiol 74: 2179-2186.
5. Cleveland CC, Yavitt JB (1998) Microbial consumption of atmospheric isoprene in a temperate forest soil. Appl Environ Microbiol 64: 172-177.
6. de Gouw J, Warneke C, Karl T, Eerdekens G, van der Veen C, Fall R (2003) Sensitivity and specificity of atmospheric trace gas detection by proton-transfer-reaction mass spectrometry. Int J Mass Spectrom 223: 365-382.
7. DeSantis TZ, Hugenholtz P, Larsen N, Rojas M, Brodie EL, Keller K, Huber T, Dalevi D, Hu P, Andersen GL (2006) Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB. Appl Environ Microbiol 72: 5069-5072.
8. Fierer N, Schimel JP, Holden PA (2003) Variations in microbial community composition through two soil depth profiles. Soil Biol Biochem 35: 167-176.
9. Fierer N, Hamady M, Lauber CL, Knight R (2008) The influence of sex, handedness, and washing on the diversity of hand surface bacteria. Proc Natl Acad Sci 105: 17994-17999.
10. Hamady M, Walker JJ, Harris JK, Gold NJ, Knight R (2008) Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex. Nat Methods 5: 235-237. doi: 10. 1038/nmeth. 1184.
11. Isidorov V, Jdanova M (2002) Volatile organic compounds from leaves litter. Chemosphere 48: 975-979. doi: PIIS0045-6535(02)00074-7.
12. Jacob DJ, Field BD, Jin EM, Bey I, Li Q, Logan JA, Yantosca RM, Singh HB (2002) Atmospheric budget of acetone. J Geophys Res 107(D10): 4100.
13. Kesselmeier J, Staudt M (1999) Biogenic volatile organic compounds (VOC): an overview on emission, physiology and ecology. J Atmos Chem 33: 23-88.
14. Lauber CL, Strickland MS, Bradford MA, Fierer N (2008) The influence of soil properties on the structure of bacterial and fungal communities across land-use types. Soil Biol Biochem 40: 2407-2415. doi: 10. 1016/j. soilbio. 2008. 05. 021.
15. Lauber CL, Hamady M, Knight R, Fierer F (2009) Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community structure at the continental scale. Appl Environ Microbiol 75: 5111-5120. doi: 10. 1128/AEM. 00335-09.
16. Leff JW, Fierer N (2008) Volatile organic compound (VOC) emissions from soil and litter samples. Soil Biol Biochem 40: 1629-1636. doi: 10. 1016/j. soilbio. 2008. 01. 018.
17. Lindinger W, Hansel A, Jordan A (1998) On-line monitoring of volatile organic compounds at pptv levels by means of proton-transfer-reaction mass spectrometry (PTR-MS) medical applications, food control and environmental research. Int J Mass Spectrom Ion Process 173: 191-241. doi: 10. 1016/S0168-1176(97)00281-4.
18. Litvak ME, Madronich S, Monson RK (2008) Herbivore-induced monoterpene emissions from coniferous forests: Potential impact on local tropospheric chemistry. Ecol Appl 9: 1147-1159.
19. Lozupone CA, Knight R (2005) UniFrac: a new phylogenetic method for comparing microbial communities. Appl Environ Microbiol 71: 8228-8235. doi: 10. 1128/AEM. 71. 12. 8228-8235. 2005.
20. Lozupone CA, Knight R (2008) Species divergence and the measurement of microbial diversity. FEMS Microbiol Rev 32: 557-578. doi: 10. 1111/j. 1574-6976. 2008. 00111.
21. Lozupone CA, Hamady M, Knight R (2006) UniFrac: an online tool for comparing microbial community diversity in a phylogenetic context. Bioinformatics 7: 371. doi: 10. 1186/1471-2105-7-371.
22. Mackie AE, Wheatley RE (1999) Effects and incidence of volatile organic compound interactions between soil bacterial and fungal isolates. Soil Biol Biochem 31: 375-385.
23. Mayrhofer S, Mikoviny T, Waldhuber S, Wagner AO, Innerebner G, Frank-Whittle IH, Mark TD, Hansel A, Insam H (2006) Microbial community related to volatile organic compound (VOC) mission in household biowaste. Environ Microbiol 8: 1960-1974. doi: 10. 1111/j. 1462-2920. 2006. 01076.
24. Monson RK (2002) Volatile organic compound emissions from terrestrial ecosystems: A primary biological control over atmospheric chemistry. Isr J Chem 42: 29-42.
25. Monson RK, Holland EA (2003) Biospheric trace gas fluxes and their control over tropospheric chemistry. Annu Rev Ecol Syst 32: 547-576.
26. Neff JC, Asner GP (2001) Dissolved organic carbon in terrestrial ecosystems: synthesis and a model. Ecosystems 4: 29-48. doi: 10. 1007/s100210000058.
27. Owen SM, Clark S, Pompe M, Semple KT (2007) Biogenic volatile organic compounds as potential carbon sources for microbial communities in soil from the rhizosphere of Populus tremula. FEMS Microbiol Lett 268: 34-39. doi: 10. 1111/j. 1574-6968. 2006. 00602.
28. Paavolainen L, Kitunen V, Smolander A (1998) Inhibition of nitrification in forest soil by monoterpenes. Plant Soil 205: 147-154.
29. Richter D, Markewitz D (2001) Understanding soil change. Cambridge University Press, Cambridge, UK.
30. Schade GW, Crutzen PJ (1999) CO emissions from degrading plant matter (II): estimate of a global source strength. Tellus B 51: 909-918. doi: 10. 1034/j. 1600-0889. 1999. t01-4-00004.
31. Schade GW, Goldstein AH (2001) Fluxes of oxygenated volatile organic compounds from a ponderosa pine plantation. J Geophys Res 106: 3111-3123.
32. Schink B, Zeikus J (1980) Microbial methanol formation: a major end product of pectin metabolism. Curr Microbiol 4: 387-389. doi: 10. 1007/BF02605383.
33. Smolander A, Ketola RA, Kotiaho T, Kanerva S, Suominen K, Kitunen V (2006) Volatile monoterpenes in soil atmosphere under birch and conifers: effects on soil N transformations. Soil Biol Biochem 38: 3436-3442. doi: 10. 1016/j. soilbio. 2006. 05. 019.
34. Stahl PD, Parkin TB (1996) Microbial production of volatile organic compounds in soil microcosms. Soil Sci Soc Am J 60: 821-828.
35. Stotzky G, Schenck S (1976) Volatile organic compounds and microorganisms. CRC Crit Rev 4: 333-381.
36. Tsuji K, Tsien HC, Hanson RS, DePalma SR, Scholtz R, LaRoche S (1990) 16S ribosomal RNA sequence analysis for determination of phylogenetic relationship among methylotrophs. J Gen Microbiol 136: 1-10.
37. Vespermann A, Kai M, Piechulla B (2007) Rhizobacterial volatiles affect the growth of fungi and Arabidopsis thaliana. Appl Environ Microbiol 73: 5639-5641. doi: 10. 1128/AEM. 01078-07.
38. x chemistry. Global Biogeochem Cycles 13: 9-17.
39. Wheatley R (2002) The consequences of volatile organic compound mediated bacterial and fungal interactions. Antonie van Leeuwenhoek 81: 357-364. doi: 10. 1023/A: 1020592802234.
40. Wheatley RE, Millar SE, Griffiths DW (1996) The production of volatile organic compounds during nitrogen transformations in soils. Plant Soil 181: 163-167. doi: 10. 1007/BF00011303.
41. Wheatley R, Hackett C, Bruce A, Kundzewicz A (1997) Effect of substrate composition on production of volatile organic compounds from Trichoderma spp. inhibitory to wood decay fungi. Int Biodeterior Biodegradation 39: 199-205.
42. White CS (1988) Nitrification inhibition by monoterpenoids: theoretical mode of action based on molecular structures. Ecology 69: 1631-1633. doi: 10. 2307/1941663.
43. +) and volatile organic compounds. Atmos Environ 38: 2177-2185. doi: 10. 1016/j. atmosenv. 2004. 01. 019.