메뉴 건너뛰기




Volumn 5, Issue , 2014, Pages

A source of the single-stranded DNA substrate for activation-induced deaminase during somatic hypermutation

Author keywords

[No Author keywords available]

Indexed keywords

ACTIVATION INDUCED CYTIDINE DEAMINASE; IMMUNOGLOBULIN HEAVY CHAIN; MESSENGER RNA; RNA POLYMERASE II; SHORT HAIRPIN RNA; SINGLE STRANDED DNA; TUBULIN; AICDA (ACTIVATION-INDUCED CYTIDINE DEAMINASE); CYTIDINE DEAMINASE; IMMUNOGLOBULIN VARIABLE REGION;

EID: 84902493677     PISSN: None     EISSN: 20411723     Source Type: Journal    
DOI: 10.1038/ncomms5137     Document Type: Article
Times cited : (27)

References (51)
  • 2
    • 0034268780 scopus 로고    scopus 로고
    • Class switch recombination and hypermutation require activation-induced cytidine deaminase (AID), a potential RNA editing enzyme
    • Muramatsu, M. et al. Class switch recombination and hypermutation require activation-induced cytidine deaminase (AID), a potential RNA editing enzyme. Cell 102, 553-563 (2000).
    • (2000) Cell , vol.102 , pp. 553-563
    • Muramatsu, M.1
  • 3
    • 0034264851 scopus 로고    scopus 로고
    • Activation-induced cytidine deaminase (AID) deficiency causes the autosomal recessive form of the Hyper-IgM syndrome (HIGM2)
    • Revy, P. et al. Activation-induced cytidine deaminase (AID) deficiency causes the autosomal recessive form of the Hyper-IgM syndrome (HIGM2). Cell 102, 565-575 (2000).
    • (2000) Cell , vol.102 , pp. 565-575
    • Revy, P.1
  • 5
    • 6344256944 scopus 로고    scopus 로고
    • Mismatch recognition and uracil excision provide complementary paths to both Ig switching and the A/T-focused phase of somatic mutation
    • DOI 10.1016/j.molcel.2004.10.011, PII S1097276504006136
    • Rada, C., Di Noia, J. M. & Neuberger, M. S. Mismatch recognition and uracil excision provide complementary paths to both Ig switching and the A/T-focused phase of somatic mutation. Mol. Cell 16, 163-171 (2004). (Pubitemid 39388832)
    • (2004) Molecular Cell , vol.16 , Issue.2 , pp. 163-171
    • Rada, C.1    Di Noia, J.M.2    Neuberger, M.S.3
  • 6
    • 42649123314 scopus 로고    scopus 로고
    • Mechanism and regulation of class switch recombination
    • DOI 10.1146/annurev.immunol.26.021607.090248
    • Stavnezer, J., Guikema, J. E. & Schrader, C. E. Mechanism and regulation of class switch recombination. Annu. Rev. Immunol. 26, 261-292 (2008). (Pubitemid 351600377)
    • (2008) Annual Review of Immunology , vol.26 , pp. 261-292
    • Stavnezer, J.1    Guikema, J.E.J.2    Schrader, C.E.3
  • 8
    • 77950955761 scopus 로고    scopus 로고
    • Origin of chromosomal translocations in lymphoid cancer
    • Nussenzweig, A. & Nussenzweig, M. C. Origin of chromosomal translocations in lymphoid cancer. Cell 141, 27-38 (2010).
    • (2010) Cell , vol.141 , pp. 27-38
    • Nussenzweig, A.1    Nussenzweig, M.C.2
  • 9
    • 84865193126 scopus 로고    scopus 로고
    • AID targeting is dependent on RNA polymerase II pausing
    • Kenter, A. L. AID targeting is dependent on RNA polymerase II pausing. Semin. Immunol. 24, 281-286 (2012).
    • (2012) Semin. Immunol. , vol.24 , pp. 281-286
    • Kenter, A.L.1
  • 11
    • 77957239251 scopus 로고    scopus 로고
    • Activation-induced cytidine deaminase targets DNA at sites of RNA polymerase II stalling by interaction with Spt5
    • Pavri, R. et al. Activation-induced cytidine deaminase targets DNA at sites of RNA polymerase II stalling by interaction with Spt5. Cell 143, 122-133 (2010).
    • (2010) Cell , vol.143 , pp. 122-133
    • Pavri, R.1
  • 12
    • 84870204989 scopus 로고    scopus 로고
    • A role for the RNA pol II-associated PAF complex in AID-induced immune diversification
    • Willmann, K. L. et al. A role for the RNA pol II-associated PAF complex in AID-induced immune diversification. J. Exp. Med. 209, 2099-2111 (2012).
    • (2012) J. Exp. Med. , vol.209 , pp. 2099-2111
    • Willmann, K.L.1
  • 13
    • 79953779997 scopus 로고    scopus 로고
    • Architecture of the RNA polymerase-Spt4/5 complex and basis of universal transcription processivity
    • Martinez-Rucobo, F. W., Sainsbury, S., Cheung, A. C. & Cramer, P. Architecture of the RNA polymerase-Spt4/5 complex and basis of universal transcription processivity. EMBO J. 30, 1302-1310 (2011).
    • (2011) EMBO J. , vol.30 , pp. 1302-1310
    • Martinez-Rucobo, F.W.1    Sainsbury, S.2    Cheung, A.C.3    Cramer, P.4
  • 14
    • 84867160564 scopus 로고    scopus 로고
    • The RNA polymerase II CTD coordinates transcription and RNA processing
    • Hsin, J. P. & Manley, J. L. The RNA polymerase II CTD coordinates transcription and RNA processing. Genes Dev. 26, 2119-2137 (2012).
    • (2012) Genes Dev. , vol.26 , pp. 2119-2137
    • Hsin, J.P.1    Manley, J.L.2
  • 15
    • 84878315605 scopus 로고    scopus 로고
    • Global regulation of promoter melting in naive lymphocytes
    • Kouzine, F. et al. Global regulation of promoter melting in naive lymphocytes. Cell 153, 988-999 (2013).
    • (2013) Cell , vol.153 , pp. 988-999
    • Kouzine, F.1
  • 16
    • 27944493275 scopus 로고    scopus 로고
    • The very 5′ end and the constant region of Ig genes are spared from somatic mutation because AID does not access these regions
    • DOI 10.1084/jem.20051604
    • Longerich, S., Tanaka, A., Bozek, G., Nicolae, D. & Storb, U. The very 5' end and the constant region of Ig genes are spared from somatic mutation because AID does not access these regions. J. Exp. Med. 202, 1443-1454 (2005). (Pubitemid 41668746)
    • (2005) Journal of Experimental Medicine , vol.202 , Issue.10 , pp. 1443-1454
    • Longerich, S.1    Tanaka, A.2    Bozek, G.3    Nicolae, D.4    Storb, U.5
  • 17
    • 0142188274 scopus 로고    scopus 로고
    • Induction of somatic hypermutation is associated with modifications in immunoglobulin variable region chromatin
    • DOI 10.1016/S1074-7613(03)00261-9
    • Woo, C. J., Martin, A. & Scharff, M. D. Induction of somatic hypermutation is associated with modifications in immunoglobulin variable region chromatin. Immunity 19, 479-489 (2003). (Pubitemid 37311430)
    • (2003) Immunity , vol.19 , Issue.4 , pp. 479-489
    • Woo, C.J.1    Martin, A.2    Scharff, M.D.3
  • 19
    • 34547873538 scopus 로고    scopus 로고
    • Sequence dependence of chromosomal R-loops at the immunoglobulin heavy-chain Smu class switch region
    • Huang, F. T. et al. Sequence dependence of chromosomal R-loops at the immunoglobulin heavy-chain Smu class switch region. Mol. Cell Biol. 27, 5921-5932 (2007).
    • (2007) Mol. Cell Biol. , vol.27 , pp. 5921-5932
    • Huang, F.T.1
  • 20
    • 0024279845 scopus 로고
    • Transcription generates positively and negatively supercoiled domains in the template
    • Wu, H. Y., Shyy, S. H., Wang, J. C. & Liu, L. F. Transcription generates positively and negatively supercoiled domains in the template. Cell 53, 433-440 (1988).
    • (1988) Cell , vol.53 , pp. 433-440
    • Wu, H.Y.1    Shyy, S.H.2    Wang, J.C.3    Liu, L.F.4
  • 21
    • 57849109058 scopus 로고    scopus 로고
    • Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters
    • Core, L. J., Waterfall, J. J. & Lis, J. T. Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters. Science 322, 1845-1848 (2008).
    • (2008) Science , vol.322 , pp. 1845-1848
    • Core, L.J.1    Waterfall, J.J.2    Lis, J.T.3
  • 22
    • 84871699564 scopus 로고    scopus 로고
    • Promoter-proximal pausing of RNA polymerase II: Emerging roles in metazoans
    • Adelman, K. & Lis, J. T. Promoter-proximal pausing of RNA polymerase II: emerging roles in metazoans. Nat. Rev. Genet. 13, 720-731 (2012).
    • (2012) Nat. Rev. Genet. , vol.13 , pp. 720-731
    • Adelman, K.1    Lis, J.T.2
  • 24
    • 68149158825 scopus 로고    scopus 로고
    • S region sequence RNA polymerase II, and histone modifications create chromatin accessibility during class switch recombination
    • Wang, L., Wuerffel, R., Feldman, S., Khamlichi, A. A. & Kenter, A. L. S region sequence, RNA polymerase II, and histone modifications create chromatin accessibility during class switch recombination. J. Exp. Med. 206, 1817-1830 (2009).
    • (2009) J. Exp. Med. , vol.206 , pp. 1817-1830
    • Wang, L.1    Wuerffel, R.2    Feldman, S.3    Khamlichi, A.A.4    Kenter, A.L.5
  • 25
    • 67449161835 scopus 로고    scopus 로고
    • Immunoglobulin switch mu sequence causes RNA polymerase II accumulation and reduces da hypermutation
    • Rajagopal, D. et al. Immunoglobulin switch mu sequence causes RNA polymerase II accumulation and reduces dA hypermutation. J. Exp. Med. 206, 1237-1244 (2009).
    • (2009) J. Exp. Med. , vol.206 , pp. 1237-1244
    • Rajagopal, D.1
  • 26
    • 84866366785 scopus 로고    scopus 로고
    • Microprocessor, Setx, Xrn2, and Rrp6 co-operate to induce premature termination of transcription by RNAPII
    • Wagschal, A. et al. Microprocessor, Setx, Xrn2, and Rrp6 co-operate to induce premature termination of transcription by RNAPII. Cell 150, 1147-1157 (2012).
    • (2012) Cell , vol.150 , pp. 1147-1157
    • Wagschal, A.1
  • 27
    • 15244358670 scopus 로고    scopus 로고
    • Distinction and relationship between elongation rate and processivity of RNA polymerase II in vivo
    • DOI 10.1016/j.molcel.2005.02.017
    • Mason, P. B. & Struhl, K. Distinction and relationship between elongation rate and processivity of RNA polymerase II in vivo. Mol. Cell 17, 831-840 (2005). (Pubitemid 40386944)
    • (2005) Molecular Cell , vol.17 , Issue.6 , pp. 831-840
    • Mason, P.B.1    Struhl, K.2
  • 28
    • 0032571254 scopus 로고    scopus 로고
    • Role of the human homolog of the yeast transcription factor SPT5 in HIV-1 Tat-activation
    • DOI 10.1006/jmbi.1997.1601
    • Wu-Baer, F., Lane, W. S. & Gaynor, R. B. Role of the human homolog of the yeast transcription factor SPT5 in HIV-1 Tat-activation. J. Mol. Biol. 277, 179-197 (1998). (Pubitemid 28174961)
    • (1998) Journal of Molecular Biology , vol.277 , Issue.2 , pp. 179-197
    • Wu-Baer, F.1    Lane, W.S.2    Gaynor, R.B.3
  • 29
    • 0036150085 scopus 로고    scopus 로고
    • Spt5 cooperates with human immunodeficiency virus type 1 Tat by preventing premature RNA release at terminator sequences
    • DOI 10.1128/MCB.22.4.1079-1093.2002
    • Bourgeois, C. F., Kim, Y. K., Churcher, M. J., West, M. J. & Karn, J. Spt5 cooperates with human immunodeficiency virus type 1 Tat by preventing premature RNA release at terminator sequences. Mol. Cell Biol. 22, 1079-1093 (2002). (Pubitemid 34094845)
    • (2002) Molecular and Cellular Biology , vol.22 , Issue.4 , pp. 1079-1093
    • Bourgeois, C.F.1    Kim, Y.K.2    Churcher, M.J.3    West, M.J.4    Karn, J.5
  • 30
    • 0032435650 scopus 로고    scopus 로고
    • TdT-accessible breaks are scattered over the immunoglobulin V domain in a constitutively hypermutating B cell line
    • DOI 10.1016/S1074-7613(00)80651-2
    • Sale, J. E. & Neuberger, M. S. TdT-accessible breaks are scattered over the immunoglobulin V domain in a constitutively hypermutating B cell line. Immunity 9, 859-869 (1998). (Pubitemid 29024465)
    • (1998) Immunity , vol.9 , Issue.6 , pp. 859-869
    • Sale, J.E.1    Neuberger, M.S.2
  • 31
    • 80455129758 scopus 로고    scopus 로고
    • Recombinase-mediated cassette exchange as a novel method to study somatic hypermutation in Ramos cells
    • Baughn, L. B. et al. Recombinase-mediated cassette exchange as a novel method to study somatic hypermutation in Ramos cells. mBio 2, e00186-e00211 (2011).
    • (2011) MBio , vol.2
    • Baughn, L.B.1
  • 32
    • 84872393129 scopus 로고
    • Transcription elongation factors DSIF and NELF: Promoter-proximal pausing and beyond
    • Yamaguchi, Y., Shibata, H. & Handa, H. Transcription elongation factors DSIF and NELF: promoter-proximal pausing and beyond. Biochim. Biophys. Acta 1829, 98-104 (2013).
    • (1829) Biochim. Biophys. Acta , pp. 98-104
    • Yamaguchi, Y.1    Shibata, H.2    Handa, H.3
  • 34
    • 84859166706 scopus 로고    scopus 로고
    • Negative supercoiling creates single-stranded patches of DNA that are substrates for AID-mediated mutagenesis
    • Parsa, J. Y. et al. Negative supercoiling creates single-stranded patches of DNA that are substrates for AID-mediated mutagenesis. PLoS Genet. 8, e1002518 (2012).
    • (2012) PLoS Genet. , vol.8
    • Parsa, J.Y.1
  • 37
    • 77949312619 scopus 로고    scopus 로고
    • The C-terminal repeat domain of Spt5 plays an important role in suppression of Rad26-independent transcription coupled repair
    • Ding, B., LeJeune, D. & Li, S. The C-terminal repeat domain of Spt5 plays an important role in suppression of Rad26-independent transcription coupled repair. J. Biol. Chem. 285, 5317-5326 (2010).
    • (2010) J. Biol. Chem. , vol.285 , pp. 5317-5326
    • Ding, B.1    Lejeune, D.2    Li, S.3
  • 38
    • 84880650205 scopus 로고    scopus 로고
    • Changes in RNA polymerase II progression influence somatic hypermutation of Ig-related genes by AID
    • Kodgire, P., Mukkawar, P., Ratnam, S., Martin, T. E. & Storb, U. Changes in RNA polymerase II progression influence somatic hypermutation of Ig-related genes by AID. J. Exp. Med. 210, 1481-1492 (2013).
    • (2013) J. Exp. Med. , vol.210 , pp. 1481-1492
    • Kodgire, P.1    Mukkawar, P.2    Ratnam, S.3    Martin, T.E.4    Storb, U.5
  • 40
    • 79551681406 scopus 로고    scopus 로고
    • The RNA exosome targets the AID cytidine deaminase to both strands of transcribed duplex DNA substrates
    • Basu, U. et al. The RNA exosome targets the AID cytidine deaminase to both strands of transcribed duplex DNA substrates. Cell 144, 353-363 (2011).
    • (2011) Cell , vol.144 , pp. 353-363
    • Basu, U.1
  • 41
    • 67649910424 scopus 로고    scopus 로고
    • Origins and activities of the eukaryotic exosome
    • Lykke-Andersen, S., Brodersen, D. E. & Jensen, T. H. Origins and activities of the eukaryotic exosome. J. Cell Sci. 122(Pt 10): 1487-1494 (2009).
    • (2009) J. Cell Sci. , vol.122 , Issue.PART 10 , pp. 1487-1494
    • Lykke-Andersen, S.1    Brodersen, D.E.2    Jensen, T.H.3
  • 42
    • 41549094037 scopus 로고    scopus 로고
    • The nuclear RNA surveillance machinery: The link between ncRNAs and genome structure in budding yeast?
    • DOI 10.1016/j.bbagrm.2007.12.008, PII S1874939907002015
    • Houseley, J. & Tollervey, D. The nuclear RNA surveillance machinery: the link between ncRNAs and genome structure in budding yeast? Biochim. Biophys. Acta 1779, 239-246 (2008). (Pubitemid 351474490)
    • (2008) Biochimica et Biophysica Acta - Gene Regulatory Mechanisms , vol.1779 , Issue.4 , pp. 239-246
    • Houseley, J.1    Tollervey, D.2
  • 43
    • 0034655640 scopus 로고    scopus 로고
    • Degradation of ribosomal RNA precursors by the exosome
    • Allmang, C., Mitchell, P., Petfalski, E. & Tollervey, D. Degradation of ribosomal RNA precursors by the exosome. Nucleic Acids Res. 28, 1684-1691 (2000). (Pubitemid 30199300)
    • (2000) Nucleic Acids Research , vol.28 , Issue.8 , pp. 1684-1691
    • Allmang, C.1    Mitchell, P.2    Petfalski, E.3    Tollervey, D.4
  • 44
    • 84860598427 scopus 로고    scopus 로고
    • The DSIF subunits Spt4 and Spt5 have distinct roles at various phases of immunoglobulin class switch recombination
    • Stanlie, A., Begum, N. A., Akiyama, H. & Honjo, T. The DSIF subunits Spt4 and Spt5 have distinct roles at various phases of immunoglobulin class switch recombination. PLoS Genet. 8, e1002675 (2012).
    • (2012) PLoS Genet. , vol.8
    • Stanlie, A.1    Begum, N.A.2    Akiyama, H.3    Honjo, T.4
  • 45
    • 0030006070 scopus 로고    scopus 로고
    • Clonal selection and learning in the antibody system
    • DOI 10.1038/381751a0
    • Rajewsky, K. Clonal selection and learning in the antibody system. Nature 381, 751-758 (1996). (Pubitemid 26243107)
    • (1996) Nature , vol.381 , Issue.6585 , pp. 751-758
    • Rajewsky, K.1
  • 46
    • 84882566900 scopus 로고    scopus 로고
    • E3-ubiquitin ligase Nedd4 determines the fate of AID-associated RNA polymerase II in B cells
    • Sun, J. et al. E3-ubiquitin ligase Nedd4 determines the fate of AID-associated RNA polymerase II in B cells. Genes Dev. 27, 1821-1833 (2013).
    • (2013) Genes Dev. , vol.27 , pp. 1821-1833
    • Sun, J.1
  • 48
    • 82755190634 scopus 로고    scopus 로고
    • Decrease in topoisomerase i is responsible for activation-induced cytidine deaminase (AID)-dependent somatic hypermutation
    • Kobayashi, M. et al. Decrease in topoisomerase I is responsible for activation-induced cytidine deaminase (AID)-dependent somatic hypermutation. Proc. Natl Acad. Sci. USA 108, 19305-19310 (2011).
    • (2011) Proc. Natl Acad. Sci. USA , vol.108 , pp. 19305-19310
    • Kobayashi, M.1
  • 49
    • 79955475464 scopus 로고    scopus 로고
    • Unravelling the means to an end: RNA polymerase II transcription termination
    • Kuehner, J. N., Pearson, E. L. & Moore, C. Unravelling the means to an end: RNA polymerase II transcription termination. Nat. Rev. Mol. Cell Biol. 12, 283-294 (2011).
    • (2011) Nat. Rev. Mol. Cell Biol. , vol.12 , pp. 283-294
    • Kuehner, J.N.1    Pearson, E.L.2    Moore, C.3
  • 50
    • 84869818088 scopus 로고    scopus 로고
    • Identification of core DNA elements that target somatic hypermutation
    • Kohler, K. M. et al. Identification of core DNA elements that target somatic hypermutation. J. Immunol. 189, 5314-5326 (2012).
    • (2012) J. Immunol. , vol.189 , pp. 5314-5326
    • Kohler, K.M.1
  • 51
    • 66349117823 scopus 로고    scopus 로고
    • Fluctuation analysis CalculatOR: A web tool for the determination of mutation rate using Luria-Delbruck fluctuation analysis
    • Hall, B. M., Ma, C. X., Liang, P. & Singh, K. K. Fluctuation analysis CalculatOR: a web tool for the determination of mutation rate using Luria-Delbruck fluctuation analysis. Bioinformatics 25, 1564-1565 (2009).
    • (2009) Bioinformatics , vol.25 , pp. 1564-1565
    • Hall, B.M.1    Ma, C.X.2    Liang, P.3    Singh, K.K.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.