-
1
-
-
0035480006
-
Human genetic defects in class-switch recombination (hyper-IgM syndromes)
-
Durandy A, Honjo T, (2001) Human genetic defects in class-switch recombination (hyper-IgM syndromes). Curr Opin Immunol 13: 543-548.
-
(2001)
Curr Opin Immunol
, vol.13
, pp. 543-548
-
-
Durandy, A.1
Honjo, T.2
-
2
-
-
34249790004
-
Molecular mechanisms of antibody somatic hypermutation
-
Di Noia JM, Neuberger MS, (2007) Molecular mechanisms of antibody somatic hypermutation. Annu Rev Biochem 76: 1-22.
-
(2007)
Annu Rev Biochem
, vol.76
, pp. 1-22
-
-
Di Noia, J.M.1
Neuberger, M.S.2
-
3
-
-
77957239251
-
Activation-induced cytidine deaminase targets DNA at sites of RNA polymerase II stalling by interaction with Spt5
-
Pavri R, Gazumyan A, Jankovic M, Di Virgilio M, Klein I, et al. (2010) Activation-induced cytidine deaminase targets DNA at sites of RNA polymerase II stalling by interaction with Spt5. Cell 143: 122-133.
-
(2010)
Cell
, vol.143
, pp. 122-133
-
-
Pavri, R.1
Gazumyan, A.2
Jankovic, M.3
Di Virgilio, M.4
Klein, I.5
-
4
-
-
79551681406
-
The RNA Exosome Targets the AID Cytidine Deaminase to Both Strands of Transcribed Duplex DNA Substrates
-
Basu U, Meng FL, Keim C, Grinstein V, Pefanis E, et al. (2011) The RNA Exosome Targets the AID Cytidine Deaminase to Both Strands of Transcribed Duplex DNA Substrates. Cell 144: 353-363.
-
(2011)
Cell
, vol.144
, pp. 353-363
-
-
Basu, U.1
Meng, F.L.2
Keim, C.3
Grinstein, V.4
Pefanis, E.5
-
5
-
-
0030063726
-
Somatic hypermutation of immunoglobulin genes is linked to transcription initiation
-
Peters A, Storb U, (1996) Somatic hypermutation of immunoglobulin genes is linked to transcription initiation. Immunity 4: 57-65.
-
(1996)
Immunity
, vol.4
, pp. 57-65
-
-
Peters, A.1
Storb, U.2
-
6
-
-
0035871625
-
Increased transcription levels induce higher mutation rates in a hypermutating cell line
-
Bachl J, Carlson C, Gray-Schopfer V, Dessing M, Olsson C, (2001) Increased transcription levels induce higher mutation rates in a hypermutating cell line. J Immunol 166: 5051-5057.
-
(2001)
J Immunol
, vol.166
, pp. 5051-5057
-
-
Bachl, J.1
Carlson, C.2
Gray-Schopfer, V.3
Dessing, M.4
Olsson, C.5
-
7
-
-
0038293484
-
Transcription enhances AID-mediated cytidine deamination by exposing single-stranded DNA on the nontemplate strand
-
Ramiro AR, Stavropoulos P, Jankovic M, Nussenzweig MC, (2003) Transcription enhances AID-mediated cytidine deamination by exposing single-stranded DNA on the nontemplate strand. Nat Immunol 4: 452-456.
-
(2003)
Nat Immunol
, vol.4
, pp. 452-456
-
-
Ramiro, A.R.1
Stavropoulos, P.2
Jankovic, M.3
Nussenzweig, M.C.4
-
8
-
-
26944465454
-
AID binds to transcription-induced structures in c-MYC that map to regions associated with translocation and hypermutation
-
Duquette ML, Pham P, Goodman MF, Maizels N, (2005) AID binds to transcription-induced structures in c-MYC that map to regions associated with translocation and hypermutation. Oncogene.
-
(2005)
Oncogene
-
-
Duquette, M.L.1
Pham, P.2
Goodman, M.F.3
Maizels, N.4
-
9
-
-
34347218988
-
Activation-induced cytidine deaminase action is strongly stimulated by mutations of the THO complex
-
Gomez-Gonzalez B, Aguilera A, (2007) Activation-induced cytidine deaminase action is strongly stimulated by mutations of the THO complex. Proc Natl Acad Sci U S A 104: 8409-8414.
-
(2007)
Proc Natl Acad Sci U S A
, vol.104
, pp. 8409-8414
-
-
Gomez-Gonzalez, B.1
Aguilera, A.2
-
10
-
-
6344256944
-
Mismatch recognition and uracil excision provide complementary paths to both Ig switching and the A/T-focused phase of somatic mutation
-
Rada C, Di Noia JM, Neuberger MS, (2004) Mismatch recognition and uracil excision provide complementary paths to both Ig switching and the A/T-focused phase of somatic mutation. Mol Cell 16: 163-171.
-
(2004)
Mol Cell
, vol.16
, pp. 163-171
-
-
Rada, C.1
Di Noia, J.M.2
Neuberger, M.S.3
-
11
-
-
70249093627
-
The concerted action of Msh2 and UNG stimulates somatic hypermutation at A. T base pairs
-
Frieder D, Larijani M, Collins C, Shulman M, Martin A, (2009) The concerted action of Msh2 and UNG stimulates somatic hypermutation at A. T base pairs. Mol Cell Biol 29: 5148-5157.
-
(2009)
Mol Cell Biol
, vol.29
, pp. 5148-5157
-
-
Frieder, D.1
Larijani, M.2
Collins, C.3
Shulman, M.4
Martin, A.5
-
12
-
-
78650307766
-
Uracil residues dependent on the deaminase AID in immunoglobulin gene variable and switch regions
-
Maul RW, Saribasak H, Martomo SA, McClure RL, Yang W, et al. (2011) Uracil residues dependent on the deaminase AID in immunoglobulin gene variable and switch regions. Nat Immunol 12: 70-76.
-
(2011)
Nat Immunol
, vol.12
, pp. 70-76
-
-
Maul, R.W.1
Saribasak, H.2
Martomo, S.A.3
McClure, R.L.4
Yang, W.5
-
14
-
-
0037019315
-
AID mutates E. coli suggesting a DNA deamination mechanism for antibody diversification
-
Petersen-Mahrt SK, Harris RS, Neuberger MS, (2002) AID mutates E. coli suggesting a DNA deamination mechanism for antibody diversification. Nature 418: 99-104.
-
(2002)
Nature
, vol.418
, pp. 99-104
-
-
Petersen-Mahrt, S.K.1
Harris, R.S.2
Neuberger, M.S.3
-
15
-
-
0037388165
-
Activation-induced cytidine deaminase deaminates deoxycytidine on single-stranded DNA but requires the action of RNase
-
Bransteitter R, Pham P, Scharff MD, Goodman MF, (2003) Activation-induced cytidine deaminase deaminates deoxycytidine on single-stranded DNA but requires the action of RNase. Proc Natl Acad Sci U S A 100: 4102-4107.
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, pp. 4102-4107
-
-
Bransteitter, R.1
Pham, P.2
Scharff, M.D.3
Goodman, M.F.4
-
16
-
-
0037901850
-
Human activation-induced cytidine deaminase causes transcription-dependent, strand-biased C to U deaminations
-
Sohail A, Klapacz J, Samaranayake M, Ullah A, Bhagwat AS, (2003) Human activation-induced cytidine deaminase causes transcription-dependent, strand-biased C to U deaminations. Nucleic Acids Res 31: 2990-2994.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 2990-2994
-
-
Sohail, A.1
Klapacz, J.2
Samaranayake, M.3
Ullah, A.4
Bhagwat, A.S.5
-
17
-
-
36849011485
-
Single-stranded DNA structure and positional context of the target cytidine determine the enzymatic efficiency of AID
-
Larijani M, Martin A, (2007) Single-stranded DNA structure and positional context of the target cytidine determine the enzymatic efficiency of AID. Mol Cell Biol 27: 8038-8048.
-
(2007)
Mol Cell Biol
, vol.27
, pp. 8038-8048
-
-
Larijani, M.1
Martin, A.2
-
18
-
-
33846424933
-
Detection of chromatin-associated single-stranded DNA in regions targeted for somatic hypermutation
-
Ronai D, Iglesias-Ussel MD, Fan M, Li Z, Martin A, et al. (2007) Detection of chromatin-associated single-stranded DNA in regions targeted for somatic hypermutation. J Exp Med 204: 181-190.
-
(2007)
J Exp Med
, vol.204
, pp. 181-190
-
-
Ronai, D.1
Iglesias-Ussel, M.D.2
Fan, M.3
Li, Z.4
Martin, A.5
-
19
-
-
10944232674
-
Complete RNA polymerase II elongation complex structure and its interactions with NTP and TFIIS
-
Kettenberger H, Armache KJ, Cramer P, (2004) Complete RNA polymerase II elongation complex structure and its interactions with NTP and TFIIS. Mol Cell 16: 955-965.
-
(2004)
Mol Cell
, vol.16
, pp. 955-965
-
-
Kettenberger, H.1
Armache, K.J.2
Cramer, P.3
-
20
-
-
73049092277
-
Nano positioning system reveals the course of upstream and nontemplate DNA within the RNA polymerase II elongation complex
-
Andrecka J, Treutlein B, Arcusa MA, Muschielok A, Lewis R, et al. (2009) Nano positioning system reveals the course of upstream and nontemplate DNA within the RNA polymerase II elongation complex. Nucleic Acids Res 37: 5803-5809.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 5803-5809
-
-
Andrecka, J.1
Treutlein, B.2
Arcusa, M.A.3
Muschielok, A.4
Lewis, R.5
-
21
-
-
79953779997
-
Architecture of the RNA polymerase-Spt4/5 complex and basis of universal transcription processivity
-
Martinez-Rucobo FW, Sainsbury S, Cheung AC, Cramer P, (2011) Architecture of the RNA polymerase-Spt4/5 complex and basis of universal transcription processivity. Embo J 30: 1302-1310.
-
(2011)
Embo J
, vol.30
, pp. 1302-1310
-
-
Martinez-Rucobo, F.W.1
Sainsbury, S.2
Cheung, A.C.3
Cramer, P.4
-
22
-
-
79952256560
-
RNA polymerase and transcription elongation factor Spt4/5 complex structure
-
Klein BJ, Bose D, Baker KJ, Yusoff ZM, Zhang X, et al. (2011) RNA polymerase and transcription elongation factor Spt4/5 complex structure. Proc Natl Acad Sci U S A 108: 546-550.
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, pp. 546-550
-
-
Klein, B.J.1
Bose, D.2
Baker, K.J.3
Yusoff, Z.M.4
Zhang, X.5
-
23
-
-
67349200276
-
Antisense transcripts of V(D)J rearrangements; artifacts caused by false priming?
-
Zhao Y, Dunn-Walters DK, Barone F, Spencer J, (2009) Antisense transcripts of V(D)J rearrangements; artifacts caused by false priming? Mol Immunol 46: 2357-2362.
-
(2009)
Mol Immunol
, vol.46
, pp. 2357-2362
-
-
Zhao, Y.1
Dunn-Walters, D.K.2
Barone, F.3
Spencer, J.4
-
24
-
-
0037650190
-
R-loops at immunoglobulin class switch regions in the chromosomes of stimulated B cells
-
Yu K, Chedin F, Hsieh CL, Wilson TE, Lieber MR, (2003) R-loops at immunoglobulin class switch regions in the chromosomes of stimulated B cells. Nat Immunol 4: 442-451.
-
(2003)
Nat Immunol
, vol.4
, pp. 442-451
-
-
Yu, K.1
Chedin, F.2
Hsieh, C.L.3
Wilson, T.E.4
Lieber, M.R.5
-
25
-
-
55949086124
-
Activities of human exonuclease 1 that promote cleavage of transcribed immunoglobulin switch regions
-
Vallur AC, Maizels N, (2008) Activities of human exonuclease 1 that promote cleavage of transcribed immunoglobulin switch regions. Proc Natl Acad Sci U S A 105: 16508-16512.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 16508-16512
-
-
Vallur, A.C.1
Maizels, N.2
-
26
-
-
4444239054
-
Activation-induced cytidine deaminase (AID) can target both DNA strands when the DNA is supercoiled
-
Shen HM, Storb U, (2004) Activation-induced cytidine deaminase (AID) can target both DNA strands when the DNA is supercoiled. Proc Natl Acad Sci U S A 101: 12997-13002.
-
(2004)
Proc Natl Acad Sci U S A
, vol.101
, pp. 12997-13002
-
-
Shen, H.M.1
Storb, U.2
-
28
-
-
0034813325
-
Clonal instability of V region hypermutation in the Ramos Burkitt's lymphoma cell line
-
Zhang W, Bardwell PD, Woo CJ, Poltoratsky V, Scharff MD, et al. (2001) Clonal instability of V region hypermutation in the Ramos Burkitt's lymphoma cell line. Int Immunol 13: 1175-1184.
-
(2001)
Int Immunol
, vol.13
, pp. 1175-1184
-
-
Zhang, W.1
Bardwell, P.D.2
Woo, C.J.3
Poltoratsky, V.4
Scharff, M.D.5
-
29
-
-
33845901812
-
Control of gene conversion and somatic hypermutation by immunoglobulin promoter and enhancer sequences
-
Yang SY, Fugmann SD, Schatz DG, (2006) Control of gene conversion and somatic hypermutation by immunoglobulin promoter and enhancer sequences. J Exp Med 203: 2919-2928.
-
(2006)
J Exp Med
, vol.203
, pp. 2919-2928
-
-
Yang, S.Y.1
Fugmann, S.D.2
Schatz, D.G.3
-
30
-
-
34547873538
-
Sequence dependence of chromosomal R-loops at the immunoglobulin heavy-chain Smu class switch region
-
Huang FT, Yu K, Balter BB, Selsing E, Oruc Z, et al. (2007) Sequence dependence of chromosomal R-loops at the immunoglobulin heavy-chain Smu class switch region. Mol Cell Biol 27: 5921-5932.
-
(2007)
Mol Cell Biol
, vol.27
, pp. 5921-5932
-
-
Huang, F.T.1
Yu, K.2
Balter, B.B.3
Selsing, E.4
Oruc, Z.5
-
31
-
-
0035923592
-
Variable deletion and duplication at recombination junction ends: implication for staggered double-strand cleavage in class-switch recombination
-
Chen X, Kinoshita K, Honjo T, (2001) Variable deletion and duplication at recombination junction ends: implication for staggered double-strand cleavage in class-switch recombination. Proc Natl Acad Sci U S A 98: 13860-13865.
-
(2001)
Proc Natl Acad Sci U S A
, vol.98
, pp. 13860-13865
-
-
Chen, X.1
Kinoshita, K.2
Honjo, T.3
-
32
-
-
0036674618
-
AID and mismatch repair in antibody diversification
-
Martin A, Scharff MD, (2002) AID and mismatch repair in antibody diversification. Nature Rev Immunol 2: 605-614.
-
(2002)
Nature Rev Immunol
, vol.2
, pp. 605-614
-
-
Martin, A.1
Scharff, M.D.2
-
33
-
-
1842865725
-
Staggered AID-dependent DNA double strand breaks are the predominant DNA lesions targeted to S mu in Ig class switch recombination
-
Rush JS, Fugmann SD, Schatz DG, (2004) Staggered AID-dependent DNA double strand breaks are the predominant DNA lesions targeted to S mu in Ig class switch recombination. Int Immunol 16: 549-557.
-
(2004)
Int Immunol
, vol.16
, pp. 549-557
-
-
Rush, J.S.1
Fugmann, S.D.2
Schatz, D.G.3
-
34
-
-
0037866984
-
H2AX is required for recombination between immunoglobulin switch regions but not for intra-switch region recombination or somatic hypermutation
-
Reina-San-Martin B, Difilippantonio S, Hanitsch L, Masilamani RF, Nussenzweig A, et al. (2003) H2AX is required for recombination between immunoglobulin switch regions but not for intra-switch region recombination or somatic hypermutation. J Exp Med 197: 1767-1778.
-
(2003)
J Exp Med
, vol.197
, pp. 1767-1778
-
-
Reina-San-Martin, B.1
Difilippantonio, S.2
Hanitsch, L.3
Masilamani, R.F.4
Nussenzweig, A.5
-
35
-
-
0242473148
-
Mutations occur in the Ig Smu region but rarely in Sgamma regions prior to class switch recombination
-
Schrader CE, Bradley SP, Vardo J, Mochegova SN, Flanagan E, et al. (2003) Mutations occur in the Ig Smu region but rarely in Sgamma regions prior to class switch recombination. Embo J 22: 5893-5903.
-
(2003)
Embo J
, vol.22
, pp. 5893-5903
-
-
Schrader, C.E.1
Bradley, S.P.2
Vardo, J.3
Mochegova, S.N.4
Flanagan, E.5
-
36
-
-
78651468710
-
Activation-induced cytidine deaminase induces reproducible DNA breaks at many non-Ig Loci in activated B cells
-
Staszewski O, Baker RE, Ucher AJ, Martier R, Stavnezer J, et al. (2011) Activation-induced cytidine deaminase induces reproducible DNA breaks at many non-Ig Loci in activated B cells. Mol Cell 41: 232-242.
-
(2011)
Mol Cell
, vol.41
, pp. 232-242
-
-
Staszewski, O.1
Baker, R.E.2
Ucher, A.J.3
Martier, R.4
Stavnezer, J.5
-
37
-
-
76049125030
-
AID-induced decrease in topoisomerase 1 induces DNA structural alteration and DNA cleavage for class switch recombination
-
Kobayashi M, Aida M, Nagaoka H, Begum NA, Kitawaki Y, et al. (2009) AID-induced decrease in topoisomerase 1 induces DNA structural alteration and DNA cleavage for class switch recombination. Proc Natl Acad Sci U S A 106: 22375-22380.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, pp. 22375-22380
-
-
Kobayashi, M.1
Aida, M.2
Nagaoka, H.3
Begum, N.A.4
Kitawaki, Y.5
-
38
-
-
39149099085
-
Two levels of protection for the B cell genome during somatic hypermutation
-
Liu M, Duke JL, Richter DJ, Vinuesa CG, Goodnow CC, et al. (2008) Two levels of protection for the B cell genome during somatic hypermutation. Nature 451: 841-845.
-
(2008)
Nature
, vol.451
, pp. 841-845
-
-
Liu, M.1
Duke, J.L.2
Richter, D.J.3
Vinuesa, C.G.4
Goodnow, C.C.5
-
39
-
-
0024279845
-
Transcription generates positively and negatively supercoiled domains in the template
-
Wu HY, Shyy SH, Wang JC, Liu LF, (1988) Transcription generates positively and negatively supercoiled domains in the template. Cell 53: 433-440.
-
(1988)
Cell
, vol.53
, pp. 433-440
-
-
Wu, H.Y.1
Shyy, S.H.2
Wang, J.C.3
Liu, L.F.4
-
40
-
-
0023433855
-
Supercoiling of the DNA template during transcription
-
Liu LF, Wang JC, (1987) Supercoiling of the DNA template during transcription. Proc Natl Acad Sci U S A 84: 7024-7027.
-
(1987)
Proc Natl Acad Sci U S A
, vol.84
, pp. 7024-7027
-
-
Liu, L.F.1
Wang, J.C.2
-
41
-
-
0026502006
-
Direct evidence for the effect of transcription on local DNA supercoiling in vivo
-
Rahmouni AR, Wells RD, (1992) Direct evidence for the effect of transcription on local DNA supercoiling in vivo. J Mol Biol 223: 131-144.
-
(1992)
J Mol Biol
, vol.223
, pp. 131-144
-
-
Rahmouni, A.R.1
Wells, R.D.2
-
42
-
-
0026440765
-
Transcriptionally driven cruciform formation in vivo
-
Dayn A, Malkhosyan S, Mirkin SM, (1992) Transcriptionally driven cruciform formation in vivo. Nucleic Acids Res 20: 5991-5997.
-
(1992)
Nucleic Acids Res
, vol.20
, pp. 5991-5997
-
-
Dayn, A.1
Malkhosyan, S.2
Mirkin, S.M.3
-
43
-
-
0033536708
-
Large-scale effects of transcriptional DNA supercoiling in vivo
-
Krasilnikov AS, Podtelezhnikov A, Vologodskii A, Mirkin SM, (1999) Large-scale effects of transcriptional DNA supercoiling in vivo. J Mol Biol 292: 1149-1160.
-
(1999)
J Mol Biol
, vol.292
, pp. 1149-1160
-
-
Krasilnikov, A.S.1
Podtelezhnikov, A.2
Vologodskii, A.3
Mirkin, S.M.4
-
44
-
-
35748946018
-
Transcription-coupled hypernegative supercoiling of plasmid DNA by T7 RNA polymerase in Escherichia coli topoisomerase I-deficient strains
-
Samul R, Leng F, (2007) Transcription-coupled hypernegative supercoiling of plasmid DNA by T7 RNA polymerase in Escherichia coli topoisomerase I-deficient strains. J Mol Biol 374: 925-935.
-
(2007)
J Mol Biol
, vol.374
, pp. 925-935
-
-
Samul, R.1
Leng, F.2
-
45
-
-
0030069150
-
High frequency class switching of an IgM+ B lymphoma clone CH12F3 to IgA+ cells
-
Nakamura M, Kondo S, Sugai M, Nazarea M, Imamura S, et al. (1996) High frequency class switching of an IgM+ B lymphoma clone CH12F3 to IgA+ cells. Int Immunol 8: 193-201.
-
(1996)
Int Immunol
, vol.8
, pp. 193-201
-
-
Nakamura, M.1
Kondo, S.2
Sugai, M.3
Nazarea, M.4
Imamura, S.5
-
46
-
-
76249097153
-
The RNF8/RNF168 ubiquitin ligase cascade facilitates class switch recombination
-
Ramachandran S, Chahwan R, Nepal RM, Frieder D, Panier S, et al. (2010) The RNF8/RNF168 ubiquitin ligase cascade facilitates class switch recombination. Proc Natl Acad Sci U S A 107: 809-814.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 809-814
-
-
Ramachandran, S.1
Chahwan, R.2
Nepal, R.M.3
Frieder, D.4
Panier, S.5
-
47
-
-
58149308524
-
Altered kinetics of nonhomologous end joining and class switch recombination in ligase IV-deficient B cells
-
Han L, Yu K, (2008) Altered kinetics of nonhomologous end joining and class switch recombination in ligase IV-deficient B cells. J Exp Med 205: 2745-2753.
-
(2008)
J Exp Med
, vol.205
, pp. 2745-2753
-
-
Han, L.1
Yu, K.2
-
48
-
-
23744455164
-
Inactivation of the SR protein splicing factor ASF/SF2 results in genomic instability
-
Li X, Manley JL, (2005) Inactivation of the SR protein splicing factor ASF/SF2 results in genomic instability. Cell 122: 365-378.
-
(2005)
Cell
, vol.122
, pp. 365-378
-
-
Li, X.1
Manley, J.L.2
-
49
-
-
33845730352
-
AID associates with single-stranded DNA with high affinity and a long complex half-life in a sequence-independent manner
-
Larijani M, Petrov AP, Kolenchenko O, Berru M, Krylov SN, et al. (2007) AID associates with single-stranded DNA with high affinity and a long complex half-life in a sequence-independent manner. Mol Cell Biol 27: 20-30.
-
(2007)
Mol Cell Biol
, vol.27
, pp. 20-30
-
-
Larijani, M.1
Petrov, A.P.2
Kolenchenko, O.3
Berru, M.4
Krylov, S.N.5
-
50
-
-
0242268033
-
Nucleic acid structures and enzymes in the immunoglobulin class switch recombination mechanism
-
Yu K, Lieber MR, (2003) Nucleic acid structures and enzymes in the immunoglobulin class switch recombination mechanism. DNA Repair (Amst) 2: 1163-1174.
-
(2003)
DNA Repair (Amst)
, vol.2
, pp. 1163-1174
-
-
Yu, K.1
Lieber, M.R.2
-
51
-
-
0038664358
-
The influence of transcriptional orientation on endogenous switch region function
-
Shinkura R, Tian M, Smith M, Chua K, Fujiwara Y, et al. (2003) The influence of transcriptional orientation on endogenous switch region function. Nat Immunol 4: 435-441.
-
(2003)
Nat Immunol
, vol.4
, pp. 435-441
-
-
Shinkura, R.1
Tian, M.2
Smith, M.3
Chua, K.4
Fujiwara, Y.5
-
52
-
-
79955009382
-
Sense transcription through the S region is essential for immunoglobulin class switch recombination
-
Haddad D, Oruc Z, Puget N, Laviolette-Malirat N, Philippe M, et al. (2011) Sense transcription through the S region is essential for immunoglobulin class switch recombination. Embo J 30: 1608-1620.
-
(2011)
Embo J
, vol.30
, pp. 1608-1620
-
-
Haddad, D.1
Oruc, Z.2
Puget, N.3
Laviolette-Malirat, N.4
Philippe, M.5
-
53
-
-
33745224311
-
Detection and structural analysis of R-loops
-
Yu K, Roy D, Huang FT, Lieber MR, (2006) Detection and structural analysis of R-loops. Methods Enzymol 409: 316-329.
-
(2006)
Methods Enzymol
, vol.409
, pp. 316-329
-
-
Yu, K.1
Roy, D.2
Huang, F.T.3
Lieber, M.R.4
-
54
-
-
13444255004
-
An evolutionarily conserved target motif for immunoglobulin class-switch recombination
-
Zarrin AA, Alt FW, Chaudhuri J, Stokes N, Kaushal D, et al. (2004) An evolutionarily conserved target motif for immunoglobulin class-switch recombination. Nat Immunol 5: 1275-1281.
-
(2004)
Nat Immunol
, vol.5
, pp. 1275-1281
-
-
Zarrin, A.A.1
Alt, F.W.2
Chaudhuri, J.3
Stokes, N.4
Kaushal, D.5
-
55
-
-
0033522905
-
Escherichia coli DNA topoisomerase I inhibits R-loop formation by relaxing transcription-induced negative supercoiling
-
Masse E, Drolet M, (1999) Escherichia coli DNA topoisomerase I inhibits R-loop formation by relaxing transcription-induced negative supercoiling. J Biol Chem 274: 16659-16664.
-
(1999)
J Biol Chem
, vol.274
, pp. 16659-16664
-
-
Masse, E.1
Drolet, M.2
-
56
-
-
58249095957
-
Transcriptional pausing and stalling causes multiple clustered mutations by human activation-induced deaminase
-
Canugovi C, Samaranayake M, Bhagwat AS, (2009) Transcriptional pausing and stalling causes multiple clustered mutations by human activation-induced deaminase. Faseb J 23: 34-44.
-
(2009)
Faseb J
, vol.23
, pp. 34-44
-
-
Canugovi, C.1
Samaranayake, M.2
Bhagwat, A.S.3
-
57
-
-
67449161835
-
Immunoglobulin switch mu sequence causes RNA polymerase II accumulation and reduces dA hypermutation
-
Rajagopal D, Maul RW, Ghosh A, Chakraborty T, Khamlichi AA, et al. (2009) Immunoglobulin switch mu sequence causes RNA polymerase II accumulation and reduces dA hypermutation. J Exp Med 206: 1237-1244.
-
(2009)
J Exp Med
, vol.206
, pp. 1237-1244
-
-
Rajagopal, D.1
Maul, R.W.2
Ghosh, A.3
Chakraborty, T.4
Khamlichi, A.A.5
-
58
-
-
68149158825
-
S region sequence, RNA polymerase II, and histone modifications create chromatin accessibility during class switch recombination
-
Wang L, Wuerffel R, Feldman S, Khamlichi AA, Kenter AL, (2009) S region sequence, RNA polymerase II, and histone modifications create chromatin accessibility during class switch recombination. J Exp Med 206: 1817-1830.
-
(2009)
J Exp Med
, vol.206
, pp. 1817-1830
-
-
Wang, L.1
Wuerffel, R.2
Feldman, S.3
Khamlichi, A.A.4
Kenter, A.L.5
-
59
-
-
3042785608
-
Intracellular transcription of G-rich DNAs induces formation of G-loops, novel structures containing G4 DNA
-
Duquette ML, Handa P, Vincent JA, Taylor AF, Maizels N, (2004) Intracellular transcription of G-rich DNAs induces formation of G-loops, novel structures containing G4 DNA. Genes Dev 18: 1618-1629.
-
(2004)
Genes Dev
, vol.18
, pp. 1618-1629
-
-
Duquette, M.L.1
Handa, P.2
Vincent, J.A.3
Taylor, A.F.4
Maizels, N.5
-
60
-
-
27944493275
-
The very 5′ end and the constant region of Ig genes are spared from somatic mutation because AID does not access these regions
-
Longerich S, Tanaka A, Bozek G, Nicolae D, Storb U, (2005) The very 5′ end and the constant region of Ig genes are spared from somatic mutation because AID does not access these regions. J Exp Med 202: 1443-1454.
-
(2005)
J Exp Med
, vol.202
, pp. 1443-1454
-
-
Longerich, S.1
Tanaka, A.2
Bozek, G.3
Nicolae, D.4
Storb, U.5
-
61
-
-
0036169650
-
Effects of sequence and structure on the hypermutability of immunoglobulin genes
-
Michael N, Martin TE, Nicolae D, Kim N, Padjen K, et al. (2002) Effects of sequence and structure on the hypermutability of immunoglobulin genes. Immunity 16: 123-134.
-
(2002)
Immunity
, vol.16
, pp. 123-134
-
-
Michael, N.1
Martin, T.E.2
Nicolae, D.3
Kim, N.4
Padjen, K.5
-
62
-
-
73349098453
-
Switch recombination and somatic hypermutation are controlled by the heavy chain 3′ enhancer region
-
Dunnick WA, Collins JT, Shi J, Westfield G, Fontaine C, et al. (2009) Switch recombination and somatic hypermutation are controlled by the heavy chain 3′ enhancer region. J Exp Med 206: 2613-2623.
-
(2009)
J Exp Med
, vol.206
, pp. 2613-2623
-
-
Dunnick, W.A.1
Collins, J.T.2
Shi, J.3
Westfield, G.4
Fontaine, C.5
-
63
-
-
0037126038
-
Somatic hypermutation of the AID transgene in B and non-B cells
-
Martin A, Scharff MD, (2002) Somatic hypermutation of the AID transgene in B and non-B cells. Proc Natl Acad Sci U S A 99: 12304-12308.
-
(2002)
Proc Natl Acad Sci U S A
, vol.99
, pp. 12304-12308
-
-
Martin, A.1
Scharff, M.D.2
-
64
-
-
78650308767
-
Deep-sequencing identification of the genomic targets of the cytidine deaminase AID and its cofactor RPA in B lymphocytes
-
Yamane A, Resch W, Kuo N, Kuchen S, Li Z, et al. Deep-sequencing identification of the genomic targets of the cytidine deaminase AID and its cofactor RPA in B lymphocytes. Nat Immunol 12: 62-69.
-
Nat Immunol
, vol.12
, pp. 62-69
-
-
Yamane, A.1
Resch, W.2
Kuo, N.3
Kuchen, S.4
Li, Z.5
-
65
-
-
33747869927
-
AID mutates a non-immunoglobulin transgene independent of chromosomal position
-
Parsa JY, Basit W, Wang CL, Gommerman JL, Carlyle JR, et al. (2007) AID mutates a non-immunoglobulin transgene independent of chromosomal position. Mol Immunol 44: 567-575.
-
(2007)
Mol Immunol
, vol.44
, pp. 567-575
-
-
Parsa, J.Y.1
Basit, W.2
Wang, C.L.3
Gommerman, J.L.4
Carlyle, J.R.5
-
66
-
-
70149094600
-
AID constrains germinal center size by rendering B cells susceptible to apoptosis
-
Zaheen A, Boulianne B, Parsa JY, Ramachandran S, Gommerman JL, et al. (2009) AID constrains germinal center size by rendering B cells susceptible to apoptosis. Blood 114: 547-554.
-
(2009)
Blood
, vol.114
, pp. 547-554
-
-
Zaheen, A.1
Boulianne, B.2
Parsa, J.Y.3
Ramachandran, S.4
Gommerman, J.L.5
|