메뉴 건너뛰기




Volumn 140, Issue 22, 2014, Pages

Assessment of amide i spectroscopic maps for a gas-phase peptide using IR-UV double-resonance spectroscopy and density functional theory calculations

Author keywords

[No Author keywords available]

Indexed keywords

AMIDES; COMPUTER SIMULATION; DENSITY FUNCTIONAL THEORY; ERRORS; EXPERIMENTS; MOLECULAR DYNAMICS; VIBRATIONS (MECHANICAL);

EID: 84902488926     PISSN: 00219606     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.4882059     Document Type: Article
Times cited : (29)

References (88)
  • 1
    • 0022463740 scopus 로고
    • 10.1016/0076-6879(86)30015-6
    • H. Susi and D. M. Byler, Methods Enzymol. 130, 290 (1986). 10.1016/0076-6879(86)30015-6
    • (1986) Methods Enzymol. , vol.130 , pp. 290
    • Susi, H.1    Byler, D.M.2
  • 3
    • 0027492164 scopus 로고
    • Determination of protein secondary structure by Fourier transform infrared spectroscopy: A critical assessment
    • DOI 10.1021/bi00053a001
    • W. K. Surewicz, H. H. Mantsch, and D. Chapman, Biochemistry 32, 389 (1993). 10.1021/bi00053a001 (Pubitemid 23034873)
    • (1993) Biochemistry , vol.32 , Issue.2 , pp. 389-394
    • Surewicz, W.K.1    Mantsch, H.H.2    Chapman, D.3
  • 7
    • 0042905881 scopus 로고    scopus 로고
    • 10.1063/1.1580807
    • K. Kwac and M. Cho, J. Chem. Phys. 119, 2247 (2003). 10.1063/1.1580807
    • (2003) J. Chem. Phys. , vol.119 , pp. 2247
    • Kwac, K.1    Cho, M.2
  • 9
    • 31544436644 scopus 로고    scopus 로고
    • A transferable electrostatic map for solvation effects on amide I vibrations and its application to linear and two-dimensional spectroscopy
    • DOI 10.1063/1.2148409, 044502
    • T. L. C. Jansen and J. Knoester, J. Chem. Phys. 124, 044502 (2006). 10.1063/1.2148409 (Pubitemid 43166334)
    • (2006) Journal of Chemical Physics , vol.124 , Issue.4 , pp. 1-11
    • La Cour Jansen, T.1    Knoester, J.2
  • 17
    • 27744526374 scopus 로고    scopus 로고
    • Electrostatic DFT map for the complete vibrational amide band of NMA
    • DOI 10.1021/jp052324l
    • T. Hayashi, W. Zhuang, and S. Mukamel, J. Phys. Chem. A 109, 9747 (2005). 10.1021/jp052324l (Pubitemid 41609702)
    • (2005) Journal of Physical Chemistry A , vol.109 , Issue.43 , pp. 9747-9759
    • Hayashi, T.1    Zhuang, W.2    Mukamel, S.3
  • 19
    • 0015271557 scopus 로고
    • 10.1002/bi1972.360110905
    • Y. Abe and S. Krimm, Biopolymers 11, 1817 (1972). 10.1002/bip.1972. 360110905
    • (1972) Biopolymers , vol.11 , pp. 1817
    • Abe, Y.1    Krimm, S.2
  • 22
    • 0001934802 scopus 로고    scopus 로고
    • 10.1002/(SICI)1097-4555(199801)29:1<81::AID-JRS214>3.0.CO;2-H
    • H. Torii and M. Tasumi, J. Raman Spectrosc. 29, 81 (1998). 10.1002/(SICI)1097-4555(199801)29:1<81::AID-JRS214>3.0.CO;2-H
    • (1998) J. Raman Spectrosc. , vol.29 , pp. 81
    • Torii, H.1    Tasumi, M.2
  • 24
    • 33749635854 scopus 로고    scopus 로고
    • Contribution of transition dipole coupling to amide coupling in IR spectra of peptide secondary structures
    • DOI 10.1016/j.vibspec.2006.04.003, PII S0924203106000592
    • J. Kubelka, J. Kim, P. Bour, and T. A. Keiderling, Vib. Spectrosc. 42, 63 (2006). 10.1016/j.vibspec.2006.04.003 (Pubitemid 44540394)
    • (2006) Vibrational Spectroscopy , vol.42 , Issue.1 , pp. 63-73
    • Kubelka, J.1    Kim, J.2    Bour, P.3    Keiderling, T.A.4
  • 27
    • 67649794383 scopus 로고    scopus 로고
    • 10.1016/j.chemphys.2009.05.016
    • J.-H. Choi and M. Cho, Chem. Phys. 361, 168 (2009). 10.1016/j.chemphys. 2009.05.016
    • (2009) Chem. Phys. , vol.361 , pp. 168
    • Choi, J.-H.1    Cho, M.2
  • 28
    • 70350451569 scopus 로고    scopus 로고
    • 10.1063/1.3243078
    • S. Yang and M. Cho, J. Chem. Phys. 131, 135102 (2009). 10.1063/1.3243078
    • (2009) J. Chem. Phys. , vol.131 , pp. 135102
    • Yang, S.1    Cho, M.2
  • 37
    • 33846090722 scopus 로고    scopus 로고
    • Structural disorder of the CD3 transmembrane domain studied with 2D IR spectroscopy and molecular dynamics simulations
    • DOI 10.1021/jp0640530
    • P. Mukherjee, I. Kass, I. T. Arkin, and M. T. Zanni, J. Phys. Chem. B 110, 24740 (2006). 10.1021/jp0640530 (Pubitemid 46065779)
    • (2006) Journal of Physical Chemistry B , vol.110 , Issue.48 , pp. 24740-24749
    • Mukherjee, P.1    Kass, I.2    Arkin, I.T.3    Zanni, M.T.4
  • 39
    • 33847696560 scopus 로고    scopus 로고
    • Amide i two-dimensional infrared spectroscopy of -hairpin peptides
    • DOI 10.1063/1.2428300
    • A. W. Smith and A. Tokmakoff, J. Chem. Phys. 126, 045109 (2007). 10.1063/1.2428300 (Pubitemid 46372735)
    • (2007) Journal of Chemical Physics , vol.126 , Issue.4 , pp. 045109
    • Smith, A.W.1    Tokmakoff, A.2
  • 42
    • 84902522524 scopus 로고    scopus 로고
    • Linear absorption and two-dimensional infrared spectra of N-methylacetamide in chloroform revisited: Polarizability and multipole effects
    • (published online).
    • T. L. C. Jansen, " Linear absorption and two-dimensional infrared spectra of N -methylacetamide in chloroform revisited: Polarizability and multipole effects," J. Phys. Chem. B (published online).
    • J. Phys. Chem. B
    • Jansen, T.L.C.1
  • 45
    • 11344272213 scopus 로고    scopus 로고
    • Local amide I mode frequencies And coupling constants in multiple-stranded antiparallel β-sheet polypeptides
    • DOI 10.1021/jp0471204
    • C. Lee and M. Cho, J. Phys. Chem. B 108, 20397 (2004). 10.1021/jp0471204 (Pubitemid 40073558)
    • (2004) Journal of Physical Chemistry B , vol.108 , Issue.52 , pp. 20397-20407
    • Lee, C.1    Cho, M.2
  • 46
    • 33947198253 scopus 로고    scopus 로고
    • Ab initio based building block model of amide I vibrations in peptides
    • DOI 10.1016/j.cplett.2007.02.033, PII S0009261407002023
    • R. D. Gorbunov and G. Stock, Chem. Phys. Lett. 437, 272 (2007). 10.1016/j.cplett.2007.02.033 (Pubitemid 46428247)
    • (2007) Chemical Physics Letters , vol.437 , Issue.4-6 , pp. 272-276
    • Gorbunov, R.D.1    Stock, G.2
  • 52
    • 15744398699 scopus 로고    scopus 로고
    • 13C isotopic labeling on infrared spectra
    • DOI 10.1021/jp0446837
    • P. Bouř and T. A. Keiderling, J. Phys. Chem. B 109, 5348 (2005). 10.1021/jp0446837 (Pubitemid 40407756)
    • (2005) Journal of Physical Chemistry B , vol.109 , Issue.11 , pp. 5348-5357
    • Bour, P.1    Keiderling, T.A.2
  • 60
    • 84856265285 scopus 로고    scopus 로고
    • version 9.1 (Schrödinger, LLC, New York).
    • MacroModel, version 9.1 (Schrödinger, LLC, New York, 2005).
    • (2005) MacroModel
  • 64
  • 65
    • 0000189651 scopus 로고
    • 10.1063/1.464913
    • A. D. Becke, J. Chem. Phys. 98, 5648 (1993). 10.1063/1.464913
    • (1993) J. Chem. Phys. , vol.98 , pp. 5648
    • Becke, A.D.1
  • 69
  • 70
    • 36649020243 scopus 로고    scopus 로고
    • An evaluation of harmonic vibrational frequency scale factors
    • DOI 10.1021/jp073974n
    • J. P. Merrick, D. Moran, and L. Radom, J. Phys. Chem. A 111, 11683 (2007). 10.1021/jp073974n (Pubitemid 350197612)
    • (2007) Journal of Physical Chemistry A , vol.111 , Issue.45 , pp. 11683-11700
    • Merrick, J.P.1    Moran, D.2    Radom, L.3
  • 71
    • 0037044503 scopus 로고    scopus 로고
    • Inter-peptide interaction and delocalization of amide I vibrational excitons in myoglobin and flavodoxin
    • DOI 10.1063/1.1504438
    • J.-H. Choi, S. Ham, and M. Cho, J. Chem. Phys. 117, 6821 (2002). 10.1063/1.1504438 (Pubitemid 35327234)
    • (2002) Journal of Chemical Physics , vol.117 , Issue.14 , pp. 6821-6832
    • Choi, J.-H.1    Ham, S.2    Cho, M.3
  • 82
    • 33846410438 scopus 로고
    • 10.1103/PhysRev.81.385
    • J. C. Slater, Phys. Rev. 81, 385 (1951). 10.1103/PhysRev.81.385
    • (1951) Phys. Rev. , vol.81 , pp. 385
    • Slater, J.C.1
  • 85
    • 0034752541 scopus 로고    scopus 로고
    • 18O group as a novel infrared probe
    • DOI 10.1002/1097-0282(200111)59:6<396::AID-BIP1044>3.0.CO;2-Y
    • J. Torres, A. Kukol, J. M. Goodman, and I. T. Arkin, Biopolymers 59, 396 (2001). 10.1002/1097-0282(200111)59:6<396::AID-BIP1044>3.0.CO;2-Y (Pubitemid 33029231)
    • (2001) Biopolymers , vol.59 , Issue.6 , pp. 396-401
    • Torres, J.1    Kukol, A.2    Goodman, J.M.3    Arkin, I.T.4
  • 86
    • 26844469318 scopus 로고    scopus 로고
    • 18O isotopomers of alanine residues in an α-helix
    • DOI 10.1021/jp052525p
    • C. Fang and R. M. Hochstrasser, J. Phys. Chem. B 109, 18652 (2005). 10.1021/jp052525p (Pubitemid 41464200)
    • (2005) Journal of Physical Chemistry B , vol.109 , Issue.39 , pp. 18652-18663
    • Fang, C.1    Hochstrasser, R.M.2
  • 87
    • 84902522526 scopus 로고    scopus 로고
    • Empirical maps for the calculation of amide i vibrational spectra of proteins from classical molecular dynamics simulations
    • (published online).
    • E. Małolepsza and J. E. Straub, " Empirical maps for the calculation of amide I vibrational spectra of proteins from classical molecular dynamics simulations," J. Phys. Chem. B (published online).
    • J. Phys. Chem. B
    • Małolepsza, E.1    Straub, J.E.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.