Inter-peptide interaction and delocalization of amide I vibrational excitons in myoglobin and flavodoxin

Journal of Chemical Physics

Volumn 117, Issue 14, 2002, Pages 6821-6832

  Choi, Jun Ho ^a   Ham, Sihyun ^a   Cho, Minhaeng ^a  

^a Korea University   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

CORRELATION THEORY; FLOW INTERACTIONS; MATHEMATICAL MODELS; MATRIX ALGEBRA; MOLECULAR SPECTROSCOPY; MOLECULAR STRUCTURE; MOLECULAR VIBRATIONS; ORGANIC COMPOUNDS; PHASE INTERFACES; PROTEINS; QUANTUM THEORY;

AMIDE VIBRATIONAL EXCITONS; FLAVODOXIN; GLOBULAR PROTEINS; HESSIAN MATRIX; INTER-PEPTIDE DELOCALIZATION; INTER-PEPTIDE INTERACTION; MYOGLOBIN; PHASE CORRELATION; QUANTUM CHEMISTRY; TRANSITION DIPOLE COUPLING MODEL;

EXCITONS;

EID: 0037044503     PISSN: 00219606     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.1504438     Document Type: Article

References (43)

1. W. K. Surewicz and H. H. Mantsch, in Spectroscopic Methods for Determining Protein Structure in Solution, edited by H. A. Havel (VCH, New York, 1996), p. 135
2. J. L. R. Arrondo and F. M. Goni, Prog. Biophys. Mol. Biol. 72, 367 (1999)
3. Infrared and Raman Spectroscopy of Biological Materials, edited by H.-U. Gremlich and B. Yan (Dekker, New York, 2000)
4. D. M. Byler and H. Susi, Biopolymers 25, 469 (1986)
5. H. Susi and D. M. Byler, Biochem. Biophys. Res. Commun. 115, 391 (1983)
6. W. K. Surewicz and H. H. Mantsch, Biochim. Biophys. Acta 952, 115 (1988)
7. M. Jackson, P. I. Haris, and D. Chapman, J. Mol. Struct. 214 329 (1989)
8. H. H. Mantsch, H. L. Casal, and R. N. Jones, in Spectroscopy of Biological Systems, Advances in Spectroscopy, edited by R. J. H. Clark and R. E. Hester (Wiley, New York, 1986), vol. 13, p. 1
9. H. H. Mantsch, W. K. Surewics, and D. Chapman, Biochemistry 32, 389 (1993)
10. S. J. Prestrelski, D. M. Byler, and M. P. Thompson, Biochemistry 30, 8797 (1994)
11. S. J. Prestrelski, D. M. Byler, and M. P. Thompson, Int. J. Pept. Protein Res. 37, 508 (1991)
12. H. Tori and M. Tasumi, in Infrared Spectroscopy of Biomolecules (Wiley-Liss, New York, 1996), p. 1
13. S. Krimm and J. Bandekar, Adv. Protein Chem. 38, 181 (1986), and references therein
14. S. Krimm and Y. Abe, Proc. Natl. Acad. Sci. U.S.A. 69, 2788 (1972)
15. W. H. Moore and S. Krimm, Proc. Natl. Acad. Sci. U.S.A. 72, 4953 (1975)
16. W. H. Moore and S. Krimm, Biopolymers 15, 2465, (1976)
17. A. M. Dwivedi and S. Krimm, Macromolecules 15, 186 (1982)
18. A. M. Dwivedi and S. Krimm, Macromolecules 16, 340 (1983)
19. C. Scheurer, A. Piryatinski, and S. Mukamel, J. Am. Chem. Soc. 123, 3114 (2001)
20. S. Woutersen and P. Hamm, J. Phys. Chem. B 104, 11316 (2000)
21. (a) P. Hamm, M. Lim, and R. M. Hochstrasser, J. Phys. Chem. B 102, 6123 (1988)
22. (b) P. Hamm, M. Lim, W. F. DeGrado, and R. M. Hochstrasser, J. Phys. Chem. A 103, 10 049 (1999)
23. A. Piryatinski, V. Chernyak, and S. Makamel, in Ultrafast Infrared and Raman Spectroscopy, edited by M. D. Fayer (Dekker, New York, 2001)
24. H. Torii and M. Tasumi, J. Chem. Phys. 96, 3379 (1992)
25. -1
26. H. Torii and M. Tasumi, J. Raman Spectrosc. 29, 81 (1998)
27. T. Miyazawa, J. Chem. Phys. 32, 16447 (1960)
28. T. Miyazawa and E. R. Blout, J. Am. Chem. Soc. 83, 712 (1961)
29. S. Krimm, J. Mol. Biol. 4, 528 (1962)
30. Yu. N. Chirgadze and N. A. Nevskaya, Biopolymers 15, 607 (1976)
31. Yu. N. Chirgadze and N. A. Nevskaya, Biopolymers 15, 627 (1976)
32. N. A. Nevskaya and Yu. N. Chirgadze, ibid. 15, 637 (1976)
33. S. Cha, S. Ham, and M. Cho, J. Chem. Phys. 117, 740 (2002)
34. M. J. Frisch, G. W. Trucks, H. B. Schlegel et al., GAUSSIAN 98, Revision A.7, Gaussian, Inc., Pittsburgh, PA, 1998
35. A. Dong, P. Huang, and W. S. Caughey, Biochemistry 29, 931 (1989)
36. S. Krimm and W. C. Reisdorf, Jr., Faraday Discuss. 99, 181 (1994)
37. T. Meiler, Y. Zhao, V. Chernyak, and S. Mukamel, J. Chem. Phys. 107, 3876 (1997)
38. D. Thouless, Phys. Rep. 13. 379 (1974)
39. M. Schreiber and Y. Toyozawa, J. Phys. Soc. Jpn. 51, 1537 (1982)
40. H. Torii and M. Tasumi, J. Chem. Phys. 97, 92 (1992)
41. H. Torii and M. Tasumi, J. Chem. Phys. 97, 86 (1992)
42. H. Torii, T. Tatsumi, and M. Tasumi, Mikrochim. Acta, Suppl. 14, 531 (1997)
43. N. G. Mirkin and S. Krimm, J. Am. Chem. Soc. 113, 9742 (1991)