Amide I modes of tripeptides: Hessian matrix reconstruction and isotope effects

Journal of Chemical Physics

Volumn 119, Issue 3, 2003, Pages 1451-1461

  Ham, Sihyun ^a   Cha, Sangyob ^a   Choi, Jun Ho ^a   Cho, Minhaeng ^a  

^a Korea University   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

CHEMICAL BONDS; COMPLEXATION; MOLECULAR VIBRATIONS; POLYPEPTIDES; PROTEINS;

FREQUENCY SHIFT;

CONFORMATIONS;

EID: 0042594667     PISSN: 00219606     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.1581855     Document Type: Article

References (48)

1. S. Krimm and J. Bandekar, Adv. Protein Chem. 38, 181 (1986).
2. S. Krimm and Y. Abe, Proc. Natl. Acad. Sci. U.S.A. 69, 2788 (1972); W. H. Moore and S. Krimm, ibid. 72, 4933 (1975).
3. S. Krimm and Y. Abe, Proc. Natl. Acad. Sci. U.S.A. 69, 2788 (1972); W. H. Moore and S. Krimm, ibid. 72, 4933 (1975).
4. W. H. Moore and S. Krimm, Biopolymers 15, 2465 (1976); A. M. Dwivedi and S. Krimm, Macromolecules 15, 186 (1982); 16, 340 (1983).
5. W. H. Moore and S. Krimm, Biopolymers 15, 2465 (1976); A. M. Dwivedi and S. Krimm, Macromolecules 15, 186 (1982); 16, 340 (1983).
6. W. H. Moore and S. Krimm, Biopolymers 15, 2465 (1976); A. M. Dwivedi and S. Krimm, Macromolecules 15, 186 (1982); 16, 340 (1983).
7. H. Toni and M. Tasumi, J. Chem. Phys. 96, 3379 (1992).
8. P. Hamm, M. Lim, and R. M. Hochstrasser, J. Phys. Chem. B 102, 6123 (1998).
9. S. Woutersen and P. Hamm, J. Phys. Chem. B 104, 11316 (2000).
10. C. Scheurer, A. Piryatinski, and S. Mukamel, J. Am. Chem. Soc. 123, 3114 (2001).
11. P. Hamm, M. Lim, W. F. DeGrado, and R. M. Hochstrasser, J. Phys. Chem. A 103, 10049 (1999).
12. P. Hamm, M. Lim, W. F. DeGrado, and R. M. Hochstrasser, J. Chem. Phys. 112, 1907 (2000).
13. H. Torii, T. Tatsumi, and M. Tasumi, J. Raman Spectrosc. 29, 81 (1998).
14. M. Cho, J. Chem. Phys. 118, 3480 (2003).
15. S. Ham, J.-H. Kim, H. Lee, and M. Cho, J. Chem. Phys. 118, 3491 (2003).
16. S. Ham and M. Cho, J. Chem. Phys. 118, 6915 (2003).
17. I. Haris, G. T. Robillard, A. A. v. Dijk, and D. Chapman, Biochemistry 31, 6279 (1992).
18. L. Tadesse, R. Nazarbaghi, and L. Walters, J. Am. Chem. Soc. 113, 7036 (1991).
19. S. Sonar, C.-P. Lee, M. Coleman, N. Patel, X. M. Liu, T. Marti, H. G. Khorana, U. L. Rajhandari, and K. Rothschild, Nat. Struct. Biol. 1, 512 (1994).
20. C. F. C. Ludlam, S. Sonar, C.-P. Lee, M. Coleman, J. Herzfeld, U. L. Rajbhandary, and K. Rothschild, Biochemistry 34, 2 (1995).
21. R. Moritz, H. Fabian, U. Hahn, M. Diem, and D. Naumann, J. Am. Chem. Soc. 124, 6259 (2002).
22. S. M. Decatur and J. Antonic, J. Am. Chem. Soc. 121, 11914 (1999).
23. S. M. Decatur, Biopolymers 54, 180 (2000).
24. C. F. C. Ludlam, I. T. Arkin, X. M. Liu, M. S. Rothman, P. Rath, S. Aimoto, S. O. Smith, D. M. Engleman, and K. Rothschild, Biophys. J. 70, 1728 (1996).
25. K. Halverson, I. Sucholeiki, T. T. Ashborn, and R. T. Landsbury, J. Am. Chem. Soc. 113, 6701 (1991).
26. C.-Y. Huang, Z. l. Getahun, T. g. Wang, W. F. DeGrado, and F. Gai, J. Am. Chem. Soc. 123, 12111 (2001).
27. P. Bour, J. Kubelka, and T. A. Keiderling, Biopolymers 53, 380 (2000).
28. R. A. G. D. Silva, J. Kubelka, P. Bour, S. M. Decatur, and T. A. Keiderling, Proc. Natl. Acad. Sci. U.S.A. 97, 8318 (2000).
29. J. Kubelka and T. A. Keiderling, J. Am. Chem. Soc. 123, 6142 (2001).
30. J. W. Brauner, C. Dugan, and R. Mendelsohn, J. Am. Chem. Soc. 122, 677 (2000).
31. S. Woutersen and P. Hamm, J. Chem. Phys. 114, 2727 (2001).
32. J. Torres, A. Kukol, J. M. Goodman, and I. T. Arkin, Biopolymers 59, 396 (2001).
33. M. Ragazzi, D. R. Ferro, and E. Clementi, J. Chem. Phys. 70, 1040 (1970).
34. M. Ramek, C.-H. Yu, and L. Schafer, Can. J. Chem. 76, 566 (1998).
35. N. G. Mirkin and S. Krimm, J. Phys. Chem. A 106, 3391 (2002).
36. Y. Mu and G. Stock, J. Phys. Chem. B 106, 5294 (2002).
37. R. Schweitzer-Stenner, F. Eker, Q. Huang, and K. Griebenow, J. Am. Chem. Soc. 123, 9628 (2001).
38. F. Eker, X. Cao, L. Nafie, Q. Huang, and R. Schweitzer-Stenner, J. Phys. Chem. B 107, 358 (2003).
39. R. Schweitzer-Stenner, Biophys. J. 83, 523 (2002).
40. M. J. Frisch, G. W. Trucks, H. B. Schlegel et al., GAUSSIAN 98, Revision A.7 Gaussian, Inc., Pittsburgh, PA, 1998.
41. J. A. Pople, A. P. Scott, M. W. Wong, and L. Radom, Isr. J. Chem. 33, 345 (1994).
42. -1 is the life-time broadening contribution.
43. D. Byler and H. Susi, Biopolymers 25, 469 (1986).
44. C. Jung, J. Mol. Recognit. 13, 325 (2000).
45. J.-H. Choi, S. Ham, and M. Cho, J. Chem. Phys. 117, 6821 (2002).
46. P. Hamm and S. Woutersen, Bull. Chem. Soc. Jpn. 75, 985 (2002).
47. R. N. Zare, Angular Monentum (Wiley, New York, 1988), p 79.
48. J.-H. Choi, S. Ham, and M. Cho, J. Phys. Chem. B (to be published).