-
1
-
-
22544449287
-
Genomic medicine: bringing biomarkers to clinical medicine
-
Seo, D., Ginsburg, G. S., Genomic medicine: bringing biomarkers to clinical medicine. Curr. Opin. Chem. Biol. 2005, 9, 381-386.
-
(2005)
Curr. Opin. Chem. Biol.
, vol.9
, pp. 381-386
-
-
Seo, D.1
Ginsburg, G.S.2
-
2
-
-
33747030845
-
Protein biomarker discovery and validation: the long and uncertain path to clinical utility
-
Rifai, N., Gillette, M. A., Carr, S. A., Protein biomarker discovery and validation: the long and uncertain path to clinical utility. Nat. Biotechnol. 2006, 24, 971-983.
-
(2006)
Nat. Biotechnol.
, vol.24
, pp. 971-983
-
-
Rifai, N.1
Gillette, M.A.2
Carr, S.A.3
-
3
-
-
77954827460
-
The path to personalized medicine
-
Hamburg, M. A., Collins, F. S., The path to personalized medicine. N. Engl. J Med. 2010, 363, 301-304.
-
(2010)
N. Engl. J Med.
, vol.363
, pp. 301-304
-
-
Hamburg, M.A.1
Collins, F.S.2
-
4
-
-
84863534126
-
Proteome and computational analyses reveal new insights into the mechanisms of hepatitis C virus-mediated liver disease posttransplantation
-
Diamond, D. L., Krasnoselsky, A. L., Burnum, K. E., Monroe, M. E. et al., Proteome and computational analyses reveal new insights into the mechanisms of hepatitis C virus-mediated liver disease posttransplantation. Hepatology 2012, 56, 28-38.
-
(2012)
Hepatology
, vol.56
, pp. 28-38
-
-
Diamond, D.L.1
Krasnoselsky, A.L.2
Burnum, K.E.3
Monroe, M.E.4
-
5
-
-
84874285978
-
In vivo quantitative proteomics of somatosensory cortical synapses shows which protein levels are modulated by sensory deprivation
-
Butko, M. T., Savas, J. N., Friedman, B., Delahunty, C. et al., In vivo quantitative proteomics of somatosensory cortical synapses shows which protein levels are modulated by sensory deprivation. Proc. Natl. Acad. Sci. 2013, 110, E726-E735.
-
(2013)
Proc. Natl. Acad. Sci.
, vol.110
-
-
Butko, M.T.1
Savas, J.N.2
Friedman, B.3
Delahunty, C.4
-
6
-
-
84860508745
-
Proteomic portrait of human breast cancer progression identifies novel prognostic markers
-
Geiger, T., Madden, S. F., Gallagher, W. M., Cox, J., Mann, M., Proteomic portrait of human breast cancer progression identifies novel prognostic markers. Cancer Res. 2012, 72, 2428-2439.
-
(2012)
Cancer Res.
, vol.72
, pp. 2428-2439
-
-
Geiger, T.1
Madden, S.F.2
Gallagher, W.M.3
Cox, J.4
Mann, M.5
-
7
-
-
84872593231
-
Systems-level analysis of proteolytic events in increased vascular permeability and complement activation in skin inflammation
-
Auf dem Keller, U., Prudova, A., Eckhard, U., Fingleton, B., Overall, C. M., Systems-level analysis of proteolytic events in increased vascular permeability and complement activation in skin inflammation. Sci. Signal. 2013, 6, rs2.
-
(2013)
Sci. Signal.
, vol.6
-
-
Auf dem Keller, U.1
Prudova, A.2
Eckhard, U.3
Fingleton, B.4
Overall, C.M.5
-
8
-
-
78649315174
-
Mass-spectrometry-based clinical proteomics-a review and prospective
-
Parker, C. E., Pearson, T. W., Anderson, N. L., Borchers, C. H., Mass-spectrometry-based clinical proteomics-a review and prospective. Analyst 2010, 135, 1830-1838.
-
(2010)
Analyst
, vol.135
, pp. 1830-1838
-
-
Parker, C.E.1
Pearson, T.W.2
Anderson, N.L.3
Borchers, C.H.4
-
9
-
-
84872008110
-
The riddle of protein diagnostics: future bleak or bright?
-
Anderson, N. L., Ptolemy, A. S., Rifai, N., The riddle of protein diagnostics: future bleak or bright? Clin. Chem. 2013, 59, 194-197.
-
(2013)
Clin. Chem.
, vol.59
, pp. 194-197
-
-
Anderson, N.L.1
Ptolemy, A.S.2
Rifai, N.3
-
10
-
-
84871983086
-
Quantitative analysis of peptides and proteins in biomedicine by targeted mass spectrometry
-
Gillette, M. A., Carr, S. A., Quantitative analysis of peptides and proteins in biomedicine by targeted mass spectrometry. Nat. Methods 2013, 10, 28-34.
-
(2013)
Nat. Methods
, vol.10
, pp. 28-34
-
-
Gillette, M.A.1
Carr, S.A.2
-
11
-
-
84872017894
-
Unleashing the power of proteomics to develop blood-based cancer markers
-
Taguchi, A., Hanash, S. M., Unleashing the power of proteomics to develop blood-based cancer markers. Clin. Chem. 2013, 59, 119-126.
-
(2013)
Clin. Chem.
, vol.59
, pp. 119-126
-
-
Taguchi, A.1
Hanash, S.M.2
-
12
-
-
84876903149
-
Computational biomarker pipeline from discovery to clinical implementation: plasma proteomic biomarkers for cardiac transplantation
-
Cohen Freue, G. V., Meredith, A., Smith, D., Bergman, A. et al., Computational biomarker pipeline from discovery to clinical implementation: plasma proteomic biomarkers for cardiac transplantation. PLoS Comput. Biol. 2013, 9, e1002963.
-
(2013)
PLoS Comput. Biol.
, vol.9
-
-
Cohen Freue, G.V.1
Meredith, A.2
Smith, D.3
Bergman, A.4
-
13
-
-
33745800293
-
Interpreting the protein language using proteomics
-
Jensen, O. N., Interpreting the protein language using proteomics. Nat. Rev. Mol. Cell Biol. 2006, 7, 391-403.
-
(2006)
Nat. Rev. Mol. Cell Biol.
, vol.7
, pp. 391-403
-
-
Jensen, O.N.1
-
14
-
-
84875255239
-
Protein TAILS: when termini tell tales of proteolysis and function
-
Lange, P. F., Overall, C. M., Protein TAILS: when termini tell tales of proteolysis and function. Curr. Opin. Chem. Biol. 2013, 17, 73-82.
-
(2013)
Curr. Opin. Chem. Biol.
, vol.17
, pp. 73-82
-
-
Lange, P.F.1
Overall, C.M.2
-
15
-
-
33750619876
-
Posttranslational protein modifications current implications for cancer detection, prevention, and therapeutics
-
Krueger, K. E., Srivastava, S., Posttranslational protein modifications current implications for cancer detection, prevention, and therapeutics. Mol. Cell. Proteomics 2006, 5, 1799-1810.
-
(2006)
Mol. Cell. Proteomics
, vol.5
, pp. 1799-1810
-
-
Krueger, K.E.1
Srivastava, S.2
-
16
-
-
64549125924
-
Multiple reaction monitoring for quantitative biomarker analysis in proteomics and metabolomics
-
Kitteringham, N. R., Jenkins, R. E., Lane, C. S., Elliott, V. L., Park, B. K., Multiple reaction monitoring for quantitative biomarker analysis in proteomics and metabolomics. J. Chromatogr. B 2009, 877, 1229-1239.
-
(2009)
J. Chromatogr. B
, vol.877
, pp. 1229-1239
-
-
Kitteringham, N.R.1
Jenkins, R.E.2
Lane, C.S.3
Elliott, V.L.4
Park, B.K.5
-
17
-
-
57649155302
-
Proteases: multifunctional enzymes in life and disease
-
López-Otín, C., Bond, J. S., Proteases: multifunctional enzymes in life and disease. J. Biol. Chem. 2008, 283, 30433-30437.
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 30433-30437
-
-
López-Otín, C.1
Bond, J.S.2
-
18
-
-
84876019734
-
Missing the target: matrix metalloproteinase antitargets in inflammation and cancer
-
Dufour, A., Overall, C. M., Missing the target: matrix metalloproteinase antitargets in inflammation and cancer. Trends Pharmacol. Sci. 2013, 34, 233-242.
-
(2013)
Trends Pharmacol. Sci.
, vol.34
, pp. 233-242
-
-
Dufour, A.1
Overall, C.M.2
-
19
-
-
84859366447
-
Protease signalling: the cutting edge
-
Turk, B., Turk, D., Turk, V., Protease signalling: the cutting edge. EMBO J. 2012, 31, 1630-1643.
-
(2012)
EMBO J.
, vol.31
, pp. 1630-1643
-
-
Turk, B.1
Turk, D.2
Turk, V.3
-
20
-
-
79959886270
-
Amyloid precursor protein processing and Alzheimer's disease
-
O'Brien, R. J., Wong, P. C., Amyloid precursor protein processing and Alzheimer's disease. Annu. Rev. Neurosci. 2011, 34, 185-204.
-
(2011)
Annu. Rev. Neurosci.
, vol.34
, pp. 185-204
-
-
O'Brien, R.J.1
Wong, P.C.2
-
21
-
-
78049374467
-
Novel research horizons for presenilins and γ-secretases in cell biology and disease
-
De Strooper, B., Annaert, W., Novel research horizons for presenilins and γ-secretases in cell biology and disease. Annu. Rev. Cell. Dev. Biol. 2010, 26, 235-260.
-
(2010)
Annu. Rev. Cell. Dev. Biol.
, vol.26
, pp. 235-260
-
-
De Strooper, B.1
Annaert, W.2
-
22
-
-
0028982454
-
Reduction of beta-amyloid peptide42 in the cerebrospinal fluid of patients with Alzheimer's disease
-
Motter, R., Vigo-Pelfrey, C., Kholodenko, D., Barbour, R. et al., Reduction of beta-amyloid peptide42 in the cerebrospinal fluid of patients with Alzheimer's disease. Ann. Neurol. 1995, 38, 643-648.
-
(1995)
Ann. Neurol.
, vol.38
, pp. 643-648
-
-
Motter, R.1
Vigo-Pelfrey, C.2
Kholodenko, D.3
Barbour, R.4
-
23
-
-
0002683274
-
Development of a specific diagnostic test for measurement of β-amyloid (1-42)[βA4 (l-42)] in CSF
-
Vanderstichele, H., Blennow, K., D'Heuvaert, N., Buyse, M.-A. et al., Development of a specific diagnostic test for measurement of β-amyloid (1-42)[βA4 (l-42)] in CSF. Adv. Behavioral Biol. 1998, 49, 773-778.
-
(1998)
Adv. Behavioral Biol.
, vol.49
, pp. 773-778
-
-
Vanderstichele, H.1
Blennow, K.2
D'Heuvaert, N.3
Buyse, M.-A.4
-
24
-
-
84878439275
-
Clinical utility and analytical challenges in measurement of cerebrospinal fluid amyloid- 1-42 and proteins as Alzheimer disease biomarkers
-
Kang, J. H., Korecka, M., Toledo, J. B., Trojanowski, J. Q., Shaw, L. M., Clinical utility and analytical challenges in measurement of cerebrospinal fluid amyloid- 1-42 and proteins as Alzheimer disease biomarkers. Clin. Chem. 2013, 59, 903-916.
-
(2013)
Clin. Chem.
, vol.59
, pp. 903-916
-
-
Kang, J.H.1
Korecka, M.2
Toledo, J.B.3
Trojanowski, J.Q.4
Shaw, L.M.5
-
25
-
-
84867722073
-
Characterization of plasma β-secretase (BACE1) activity and soluble amyloid precursor proteins as potential biomarkers for Alzheimer's disease
-
Wu, G., Sankaranarayanan, S., Wong, J., Tugusheva, K. et al., Characterization of plasma β-secretase (BACE1) activity and soluble amyloid precursor proteins as potential biomarkers for Alzheimer's disease. J. Neurosci. Res. 2012, 90, 2247-2258.
-
(2012)
J. Neurosci. Res.
, vol.90
, pp. 2247-2258
-
-
Wu, G.1
Sankaranarayanan, S.2
Wong, J.3
Tugusheva, K.4
-
26
-
-
84858113047
-
Age and diagnostic performance of Alzheimer disease CSF biomarkers
-
Mattsson, N., Rosen, E., Hansson, O., Andreasen, N. et al., Age and diagnostic performance of Alzheimer disease CSF biomarkers. Neurology 2012, 78, 468-476.
-
(2012)
Neurology
, vol.78
, pp. 468-476
-
-
Mattsson, N.1
Rosen, E.2
Hansson, O.3
Andreasen, N.4
-
27
-
-
84900196508
-
-
Edwards, D., Hoyer-Hansen, G., Blasi, F., Sloane, B. F. (Eds), Springer, New York
-
Cox, J. H., Overall, C. M., Edwards, D., Hoyer-Hansen, G., Blasi, F., Sloane, B. F. (Eds), The cancer degradome. Springer, New York 2008, pp. 519-539.
-
(2008)
The cancer degradome
, pp. 519-539
-
-
Cox, J.H.1
Overall, C.M.2
-
28
-
-
0034682885
-
Inflammation dampened by gelatinase A cleavage of monocyte chemoattractant protein-3
-
McQuibban, G. A., Inflammation dampened by gelatinase A cleavage of monocyte chemoattractant protein-3. Science 2000, 289, 1202-1206.
-
(2000)
Science
, vol.289
, pp. 1202-1206
-
-
McQuibban, G.A.1
-
29
-
-
0141653868
-
HIV-induced metalloproteinase processing of the chemokine stromal cell derived factor-1 causes neurodegeneration
-
Zhang, K., McQuibban, G. A., Silva, C., Butler, G. S. et al., HIV-induced metalloproteinase processing of the chemokine stromal cell derived factor-1 causes neurodegeneration. Nat. Neurosci. 2003, 6, 1064-1071.
-
(2003)
Nat. Neurosci.
, vol.6
, pp. 1064-1071
-
-
Zhang, K.1
McQuibban, G.A.2
Silva, C.3
Butler, G.S.4
-
30
-
-
75749130354
-
The clinical plasma proteome: a survey of clinical assays for proteins in plasma and serum
-
Anderson, N. L., The clinical plasma proteome: a survey of clinical assays for proteins in plasma and serum. Clin. Chem. 2010, 56, 177-185.
-
(2010)
Clin. Chem.
, vol.56
, pp. 177-185
-
-
Anderson, N.L.1
-
31
-
-
0025318519
-
Coagulation disturbances in cancer of the breast and colon measured with specific monoclonal antibody enzyme immunoassay for fibrin-fibrinogen degradation products
-
McCulloch, P., Nieuwenhuizen, W., Douglas, J., Lowe, G. D. O., George, W. D., Coagulation disturbances in cancer of the breast and colon measured with specific monoclonal antibody enzyme immunoassay for fibrin-fibrinogen degradation products. Pathophysiol. Haemos. Thromb. 1990, 20, 73-80.
-
(1990)
Pathophysiol. Haemos. Thromb.
, vol.20
, pp. 73-80
-
-
McCulloch, P.1
Nieuwenhuizen, W.2
Douglas, J.3
Lowe, G.D.O.4
George, W.D.5
-
32
-
-
80052290625
-
TopFIND, a knowledgebase linking protein termini with function
-
Lange, P. F., Overall, C. M., TopFIND, a knowledgebase linking protein termini with function. Nat. Methods 2011, 8, 703-704.
-
(2011)
Nat. Methods
, vol.8
, pp. 703-704
-
-
Lange, P.F.1
Overall, C.M.2
-
33
-
-
84896969045
-
Annotating N termini for the Human Proteome Project: N termini and Nα-acetylation status differentiate stable cleaved protein species from degradation remnants in the human erythrocyte proteome
-
in press.
-
Lange, P. F., Huesgen, P. F., Nguyen, K., Overall, C. M., Annotating N termini for the Human Proteome Project: N termini and Nα-acetylation status differentiate stable cleaved protein species from degradation remnants in the human erythrocyte proteome. J. Proteome Res. 2014. in press.
-
(2014)
J. Proteome Res.
-
-
Lange, P.F.1
Huesgen, P.F.2
Nguyen, K.3
Overall, C.M.4
-
34
-
-
84902110742
-
Transcriptional role of moonlightning MMP12 in antiviral
-
2014, in press.
-
Marchant, D. J., Bellac, C., Moraes, T. J., Wadsworth, S. J. et al., Transcriptional role of moonlightning MMP12 in antiviral Immunity. Nat. Medicine 2014, in press.
-
Immunity. Nat. Medicine
-
-
Marchant, D.J.1
Bellac, C.2
Moraes, T.J.3
Wadsworth, S.J.4
-
35
-
-
40549132858
-
Tools for analyzing and predicting N-terminal protein modifications
-
Meinnel, T., Giglione, C., Tools for analyzing and predicting N-terminal protein modifications. Proteomics 2008, 8, 626-649.
-
(2008)
Proteomics
, vol.8
, pp. 626-649
-
-
Meinnel, T.1
Giglione, C.2
-
36
-
-
79960683356
-
The N-end rule pathway and regulation by proteolysis
-
Varshavsky, A., The N-end rule pathway and regulation by proteolysis. Protein Sci. 2011, 20, 1298-1345.
-
(2011)
Protein Sci.
, vol.20
, pp. 1298-1345
-
-
Varshavsky, A.1
-
37
-
-
0019513273
-
Nonenzymatic glycosylation of proterelevance to diabetes
-
Bunn, H. F., Nonenzymatic glycosylation of proterelevance to diabetes. Am. J. Med. 1981, 70, 325-330.
-
(1981)
Am. J. Med.
, vol.70
, pp. 325-330
-
-
Bunn, H.F.1
-
38
-
-
0025027476
-
Effect of long-term monitoring of glycosylated hemoglobin levels in insulin-dependent diabetes mellitus
-
Larsen, M. L., Hørder, M., Mogensen, E. F., Effect of long-term monitoring of glycosylated hemoglobin levels in insulin-dependent diabetes mellitus. N. Engl. J. Med. 1990, 323, 1021-1025.
-
(1990)
N. Engl. J. Med.
, vol.323
, pp. 1021-1025
-
-
Larsen, M.L.1
Hørder, M.2
Mogensen, E.F.3
-
39
-
-
0028855851
-
Dominant and differential deposition of distinct β-amyloid peptide species, A β N3 (pE), in senile plaques
-
Saido, T. C., Iwatsubo, T., Mann, D., Shimada, H. et al., Dominant and differential deposition of distinct β-amyloid peptide species, A β N3 (pE), in senile plaques. Neuron 1995, 14, 457-466.
-
(1995)
Neuron
, vol.14
, pp. 457-466
-
-
Saido, T.C.1
Iwatsubo, T.2
Mann, D.3
Shimada, H.4
-
40
-
-
0028106152
-
Relative abundance of Alzheimer A beta amyloid peptide variants in Alzheimer disease and normal aging
-
Näslund, J., Schierhorn, A., Hellman, U., Lannfelt, L. et al., Relative abundance of Alzheimer A beta amyloid peptide variants in Alzheimer disease and normal aging. Proc. Natl. Acad. Sci. USA 1994, 91, 8378-8382.
-
(1994)
Proc. Natl. Acad. Sci. USA
, vol.91
, pp. 8378-8382
-
-
Näslund, J.1
Schierhorn, A.2
Hellman, U.3
Lannfelt, L.4
-
41
-
-
33947305482
-
Characterization of Aβ11-40/42 peptide deposition in Alzheimer's disease and young Down's syndrome brains: implication of N-terminally truncated Aβ species in the pathogenesis of Alzheimer's disease
-
Liu, K., Solano, I., Mann, D., Lemere, C. et al., Characterization of Aβ11-40/42 peptide deposition in Alzheimer's disease and young Down's syndrome brains: implication of N-terminally truncated Aβ species in the pathogenesis of Alzheimer's disease. Acta. Neuropathol. 2006, 112, 163-174.
-
(2006)
Acta. Neuropathol.
, vol.112
, pp. 163-174
-
-
Liu, K.1
Solano, I.2
Mann, D.3
Lemere, C.4
-
42
-
-
84866893131
-
The metalloprotease meprin β generates amino terminal-truncated amyloid β peptide species
-
Bien, J., Jefferson, T., Čaušević, M., Jumpertz, T. et al., The metalloprotease meprin β generates amino terminal-truncated amyloid β peptide species. J. Biol. Chem. 2012, 287, 33304-33313.
-
(2012)
J. Biol. Chem.
, vol.287
, pp. 33304-33313
-
-
Bien, J.1
Jefferson, T.2
Čaušević, M.3
Jumpertz, T.4
-
43
-
-
53549099647
-
Glutaminyl cyclase inhibition attenuates pyroglutamate Aβ and Alzheimer's disease-like pathology
-
Schilling, S., Zeitschel, U., Hoffmann, T., Heiser, U. et al., Glutaminyl cyclase inhibition attenuates pyroglutamate Aβ and Alzheimer's disease-like pathology. Nat. Med. 2008, 14, 1106-1111.
-
(2008)
Nat. Med.
, vol.14
, pp. 1106-1111
-
-
Schilling, S.1
Zeitschel, U.2
Hoffmann, T.3
Heiser, U.4
-
44
-
-
0031969223
-
Alzheimer's disease as proteolytic disorders: anabolism and catabolism of beta-amyloid
-
Saido, T. C., Alzheimer's disease as proteolytic disorders: anabolism and catabolism of beta-amyloid. Neurobiol. Aging 1998, 19, S69-S75.
-
(1998)
Neurobiol. Aging
, vol.19
-
-
Saido, T.C.1
-
45
-
-
33749617597
-
On the seeding and oligomerization of pGlu-amyloid peptides (in vitro)
-
Schilling, S., Lauber, T., Schaupp, M., Manhart, S. et al., On the seeding and oligomerization of pGlu-amyloid peptides (in vitro). Biochemistry 2006, 45, 12393-12399.
-
(2006)
Biochemistry
, vol.45
, pp. 12393-12399
-
-
Schilling, S.1
Lauber, T.2
Schaupp, M.3
Manhart, S.4
-
46
-
-
84862227658
-
TopFIND 2.0 - linking protein termini with proteolytic processing and modifications altering protein function
-
Lange, P. F., Huesgen, P. F., Overall, C. M., TopFIND 2.0 - linking protein termini with proteolytic processing and modifications altering protein function. Nucl. Acids Res. 2012, 40, D351-D361.
-
(2012)
Nucl. Acids Res.
, vol.40
-
-
Lange, P.F.1
Huesgen, P.F.2
Overall, C.M.3
-
47
-
-
79960262137
-
Streamlining biomarker discovery
-
Latterich, M., Schnitzer, J. E., Streamlining biomarker discovery. Nat. Biotechnol. 2011, 29, 600-602.
-
(2011)
Nat. Biotechnol.
, vol.29
, pp. 600-602
-
-
Latterich, M.1
Schnitzer, J.E.2
-
48
-
-
33745954240
-
Diagnostics and biomarker development: priming the pipeline
-
Phillips, K. A., Van Bebber, S., Issa, A. M., Diagnostics and biomarker development: priming the pipeline. Nat. Rev. Drug Discov. 2006, 5, 463-469.
-
(2006)
Nat. Rev. Drug Discov.
, vol.5
, pp. 463-469
-
-
Phillips, K.A.1
Van Bebber, S.2
Issa, A.M.3
-
49
-
-
84859847988
-
N- and C-terminal degradomics: new approaches to reveal biological roles for plant proteases from substrate identification
-
Huesgen, P. F., Overall, C. M., N- and C-terminal degradomics: new approaches to reveal biological roles for plant proteases from substrate identification. Physiol. Plant 2012, 145, 5-17.
-
(2012)
Physiol. Plant
, vol.145
, pp. 5-17
-
-
Huesgen, P.F.1
Overall, C.M.2
-
50
-
-
84890577781
-
Proteolytic post-translational modification of proteins: Proteomic tools and methodology
-
Rogers, L. D., Overal, C. M., Proteolytic post-translational modification of proteins: Proteomic tools and methodology. Mol. Cell. Proteomics 2013, 12, 3532-3542.
-
(2013)
Mol. Cell. Proteomics
, vol.12
, pp. 3532-3542
-
-
Rogers, L.D.1
Overal, C.M.2
-
51
-
-
84875266403
-
Contemporary positional proteomics strategies to study protein processing
-
Plasman, K., Van Damme, P., Gevaert, K., Contemporary positional proteomics strategies to study protein processing. Cell 2013, 17, 66-72.
-
(2013)
Cell
, vol.17
, pp. 66-72
-
-
Plasman, K.1
Van Damme, P.2
Gevaert, K.3
-
52
-
-
77749320923
-
Isotopic labeling of terminal amines in complex samples identifies protein N-termini and protease cleavage products
-
Kleifeld, O., Doucet, A., Auf dem Keller, U., Prudova, A. et al., Isotopic labeling of terminal amines in complex samples identifies protein N-termini and protease cleavage products. Nat. Biotechnol. 2010, 28, 281-288.
-
(2010)
Nat. Biotechnol.
, vol.28
, pp. 281-288
-
-
Kleifeld, O.1
Doucet, A.2
Auf dem Keller, U.3
Prudova, A.4
-
53
-
-
77954693076
-
Proteome-wide analysis of protein carboxy termini: C terminomics
-
Schilling, O., Barré, O., Huesgen, P. F., Overall, C. M., Proteome-wide analysis of protein carboxy termini: C terminomics. Nat. Methods 2010, 7, 508-511.
-
(2010)
Nat. Methods
, vol.7
, pp. 508-511
-
-
Schilling, O.1
Barré, O.2
Huesgen, P.F.3
Overall, C.M.4
-
54
-
-
0038333588
-
Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides
-
Gevaert, K., Goethals, M., Martens, L., Van Damme, J. et al., Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides. Nat. Biotechnol. 2003, 21, 566-569.
-
(2003)
Nat. Biotechnol.
, vol.21
, pp. 566-569
-
-
Gevaert, K.1
Goethals, M.2
Martens, L.3
Van Damme, J.4
-
55
-
-
77949502598
-
Sampling the N-terminal proteome of human blood
-
Wildes, D., Wells, J. A., Sampling the N-terminal proteome of human blood. Proc. Natl. Acad. Sci. 2010, 107, 4561-4566.
-
(2010)
Proc. Natl. Acad. Sci.
, vol.107
, pp. 4561-4566
-
-
Wildes, D.1
Wells, J.A.2
-
56
-
-
84897055735
-
The Human Proteome Organization Chromosome 6 Consortium: integrating chromosome-centric and biology/disease driven strategies
-
doi: 10.1016/j.jprot.2013.08.001. [Epub ahead of print]
-
Borchers, C. H., Kast, J., Foster, L. J., Siu, K. W. M. et al., The Human Proteome Organization Chromosome 6 Consortium: integrating chromosome-centric and biology/disease driven strategies. J. Proteomics 2013. doi: 10.1016/j.jprot.2013.08.001. [Epub ahead of print]
-
(2013)
J. Proteomics
-
-
Borchers, C.H.1
Kast, J.2
Foster, L.J.3
Siu, K.W.M.4
-
57
-
-
79960269601
-
A pipeline that integrates the discovery and verification of plasma protein biomarkers reveals candidate markers for cardiovascular disease
-
Addona, T. A., Shi, X., Keshishian, H., Mani, D. R. et al., A pipeline that integrates the discovery and verification of plasma protein biomarkers reveals candidate markers for cardiovascular disease. Nat. Biotechnol. 2011, 29, 635-643.
-
(2011)
Nat. Biotechnol.
, vol.29
, pp. 635-643
-
-
Addona, T.A.1
Shi, X.2
Keshishian, H.3
Mani, D.R.4
-
58
-
-
79960214321
-
A targeted proteomics-based pipeline for verification of biomarkers in plasma
-
Whiteaker, J. R., Lin, C., Kennedy, J., Hou, L. et al., A targeted proteomics-based pipeline for verification of biomarkers in plasma. Nat. Biotechnol. 2011, 29, 625-634.
-
(2011)
Nat. Biotechnol.
, vol.29
, pp. 625-634
-
-
Whiteaker, J.R.1
Lin, C.2
Kennedy, J.3
Hou, L.4
-
59
-
-
33645721632
-
Quantitative mass spectrometric multiple reaction monitoring assays for major plasma proteins
-
Anderson, L., Hunter, C. L., Quantitative mass spectrometric multiple reaction monitoring assays for major plasma proteins. Mol. Cell. Proteomics 2006, 5, 573-588.
-
(2006)
Mol. Cell. Proteomics
, vol.5
, pp. 573-588
-
-
Anderson, L.1
Hunter, C.L.2
-
60
-
-
54049090766
-
Selected reaction monitoring for quantitative proteomics: a tutorial
-
Lange, V., Picotti, P., Domon, B., Aebersold, R., Selected reaction monitoring for quantitative proteomics: a tutorial. Mol. Syst. Biol. 2008, 4, 222.
-
(2008)
Mol. Syst. Biol.
, vol.4
, pp. 222
-
-
Lange, V.1
Picotti, P.2
Domon, B.3
Aebersold, R.4
-
61
-
-
84897097267
-
Absolute proteomic quantification of the activity state of proteases and proteolytic cleavages using proteolytic signature peptides and isobaric tags
-
doi: 10.1016/j.jprot.2013.09.006. [Epub ahead of print].
-
Fahlmann, R. P., Chen, W., Overall, C. M., Absolute proteomic quantification of the activity state of proteases and proteolytic cleavages using proteolytic signature peptides and isobaric tags. J. Proteomics 2013. doi: 10.1016/j.jprot.2013.09.006. [Epub ahead of print].
-
(2013)
J. Proteomics
-
-
Fahlmann, R.P.1
Chen, W.2
Overall, C.M.3
-
62
-
-
67650564834
-
Multi-site assessment of the precision and reproducibility of multiple reaction monitoring-based measurements of proteins in plasma
-
Addona, T. A., Abbatiello, S. E., Schilling, B., Skates, S. J. et al., Multi-site assessment of the precision and reproducibility of multiple reaction monitoring-based measurements of proteins in plasma. Nat. Biotechnol. 2009, 27, 633-641.
-
(2009)
Nat. Biotechnol.
, vol.27
, pp. 633-641
-
-
Addona, T.A.1
Abbatiello, S.E.2
Schilling, B.3
Skates, S.J.4
-
63
-
-
84884373799
-
Design, implementation and multisite evaluation of a system suitability protocol for the quantitative assessment of instrument performance in liquid chromatography-multiple reaction monitoring-MS (LC-MRM-MS)
-
Abbatiello, S. E., Mani, D. R., Schilling, B., MacLean, B. et al., Design, implementation and multisite evaluation of a system suitability protocol for the quantitative assessment of instrument performance in liquid chromatography-multiple reaction monitoring-MS (LC-MRM-MS). Mol. Cell. Proteomics 2013, 12, 2623-2639.
-
(2013)
Mol. Cell. Proteomics
, vol.12
, pp. 2623-2639
-
-
Abbatiello, S.E.1
Mani, D.R.2
Schilling, B.3
MacLean, B.4
-
64
-
-
84888295045
-
Method and platform standardization in MRM-based quantitative plasma proteomics
-
Percy, A. J., Chambers, A. G., Yang, J., Jackson, A. M. et al., Method and platform standardization in MRM-based quantitative plasma proteomics. J. Proteomics 2013, 95, 66-76.
-
(2013)
J. Proteomics
, vol.95
, pp. 66-76
-
-
Percy, A.J.1
Chambers, A.G.2
Yang, J.3
Jackson, A.M.4
-
65
-
-
65749097654
-
Chapter 13. Characterizing proteolytic processing of chemokines by mass spectrometry, biochemistry, neo-epitope antibodies and functional assays
-
Starr, A. E., Overall, C. M., Chapter 13. Characterizing proteolytic processing of chemokines by mass spectrometry, biochemistry, neo-epitope antibodies and functional assays. Meth. Enzymol. 2009, 461, 281-307.
-
(2009)
Meth. Enzymol.
, vol.461
, pp. 281-307
-
-
Starr, A.E.1
Overall, C.M.2
-
66
-
-
0026714961
-
Monoclonal antibodies recognizing protease-generated neoepitopes from cartilage proteoglycan degradation. Application to studies of human link protein cleavage by stromelysin
-
Hughes, C. E., Caterson, B., White, R. J., Roughley, P. J., Mort, J. S., Monoclonal antibodies recognizing protease-generated neoepitopes from cartilage proteoglycan degradation. Application to studies of human link protein cleavage by stromelysin. J. Biol. Chem. 1992, 267, 16011-16014.
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 16011-16014
-
-
Hughes, C.E.1
Caterson, B.2
White, R.J.3
Roughley, P.J.4
Mort, J.S.5
-
67
-
-
2542640080
-
Mass spectrometry as a diagnostic and a cancer biomarker discovery tool: opportunities and potential limitations
-
Diamandis, E. P., Mass spectrometry as a diagnostic and a cancer biomarker discovery tool: opportunities and potential limitations. Mol. Cell. Proteomics 2004, 3, 367-378.
-
(2004)
Mol. Cell. Proteomics
, vol.3
, pp. 367-378
-
-
Diamandis, E.P.1
-
68
-
-
66349106471
-
Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach
-
Gauci, S., Helbig, A. O., Slijper, M., Krijgsveld, J. et al., Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach. Anal. Chem. 2009, 81, 4493-4501.
-
(2009)
Anal. Chem.
, vol.81
, pp. 4493-4501
-
-
Gauci, S.1
Helbig, A.O.2
Slijper, M.3
Krijgsveld, J.4
-
69
-
-
80053404377
-
Identifying and quantifying proteolytic events and the natural N terminome by terminal amine isotopic labeling of substrates
-
Kleifeld, O., Doucet, A., Prudova, A., Keller, U. A. D. et al., Identifying and quantifying proteolytic events and the natural N terminome by terminal amine isotopic labeling of substrates. Nat. Protoc. 2011, 6, 1578-1611.
-
(2011)
Nat. Protoc.
, vol.6
, pp. 1578-1611
-
-
Kleifeld, O.1
Doucet, A.2
Prudova, A.3
Keller, U.A.D.4
-
70
-
-
84855877960
-
Systematic and quantitative comparison of digest efficiency and specificity reveals the impact of trypsin quality on MS-based proteomics
-
Burkhart, J. M., Schumbrutzki, C., Wortelkamp, S., Sickmann, A., Zahedi, R. P., Systematic and quantitative comparison of digest efficiency and specificity reveals the impact of trypsin quality on MS-based proteomics. J. Proteomics 2012, 75, 1454-1462.
-
(2012)
J. Proteomics
, vol.75
, pp. 1454-1462
-
-
Burkhart, J.M.1
Schumbrutzki, C.2
Wortelkamp, S.3
Sickmann, A.4
Zahedi, R.P.5
-
71
-
-
77957344363
-
A quantitative study of the effects of chaotropic agents, surfactants, and solvents on the digestion efficiency of human plasma proteins by trypsin
-
Proc, J. L., Kuzyk, M. A., Hardie, D. B., Yang, J. et al., A quantitative study of the effects of chaotropic agents, surfactants, and solvents on the digestion efficiency of human plasma proteins by trypsin. J. Proteome Res. 2010, 9, 5422-5437.
-
(2010)
J. Proteome Res.
, vol.9
, pp. 5422-5437
-
-
Proc, J.L.1
Kuzyk, M.A.2
Hardie, D.B.3
Yang, J.4
-
72
-
-
84860854049
-
Advancing the sensitivity of selected reaction monitoring-based targeted quantitative proteomics
-
Shi, T., Su, D., Liu, T., Tang, K. et al., Advancing the sensitivity of selected reaction monitoring-based targeted quantitative proteomics. Proteomics 2012, 12, 1074-1092.
-
(2012)
Proteomics
, vol.12
, pp. 1074-1092
-
-
Shi, T.1
Su, D.2
Liu, T.3
Tang, K.4
-
73
-
-
31044436630
-
Differential exoprotease activities confer tumor-specific serum peptidome patterns
-
Villanueva, J., Shaffer, D. R., Philip, J., Chaparro, C. A. et al., Differential exoprotease activities confer tumor-specific serum peptidome patterns. J. Clin. Invest. 2006, 116, 271-284.
-
(2006)
J. Clin. Invest.
, vol.116
, pp. 271-284
-
-
Villanueva, J.1
Shaffer, D.R.2
Philip, J.3
Chaparro, C.A.4
-
74
-
-
66449083773
-
Developing multiplexed assays for troponin I and interleukin-33 in plasma by peptide immunoaffinity enrichment and targeted mass spectrometry
-
Kuhn, E., Addona, T., Keshishian, H., Burgess, M. et al., Developing multiplexed assays for troponin I and interleukin-33 in plasma by peptide immunoaffinity enrichment and targeted mass spectrometry. Clin. Chem. 2009, 55, 1108-1117.
-
(2009)
Clin. Chem.
, vol.55
, pp. 1108-1117
-
-
Kuhn, E.1
Addona, T.2
Keshishian, H.3
Burgess, M.4
-
75
-
-
76649109590
-
An automated and multiplexed method for high throughput peptide immunoaffinity enrichment and multiple reaction monitoring mass spectrometry-based quantification of protein biomarkers
-
Whiteaker, J. R., Zhao, L., Anderson, L., Paulovich, A. G., An automated and multiplexed method for high throughput peptide immunoaffinity enrichment and multiple reaction monitoring mass spectrometry-based quantification of protein biomarkers. Mol. Cell. Proteomics 2010, 9, 184-196.
-
(2010)
Mol. Cell. Proteomics
, vol.9
, pp. 184-196
-
-
Whiteaker, J.R.1
Zhao, L.2
Anderson, L.3
Paulovich, A.G.4
-
76
-
-
54049129625
-
Pivotal evaluation of the accuracy of a biomarker used for classification or prediction: standards for study design
-
Pepe, M. S., Feng, Z., Janes, H., Bossuyt, P. M., Potter, J. D., Pivotal evaluation of the accuracy of a biomarker used for classification or prediction: standards for study design. J. Natl. Cancer Inst. 2008, 100, 1432-1438.
-
(2008)
J. Natl. Cancer Inst.
, vol.100
, pp. 1432-1438
-
-
Pepe, M.S.1
Feng, Z.2
Janes, H.3
Bossuyt, P.M.4
Potter, J.D.5
-
77
-
-
55349134214
-
The interface between biomarker discovery and clinical validation: the tar pit of the protein biomarker pipeline
-
Paulovich, A. G., Whiteaker, J. R., Hoofnagle, A. N., Wang, P., The interface between biomarker discovery and clinical validation: the tar pit of the protein biomarker pipeline. Prot. Clin. Appl. 2008, 2, 1386-1402.
-
(2008)
Prot. Clin. Appl.
, vol.2
, pp. 1386-1402
-
-
Paulovich, A.G.1
Whiteaker, J.R.2
Hoofnagle, A.N.3
Wang, P.4
-
78
-
-
84869790085
-
Measurement of hemoglobin A1c A new twist on the path to harmony
-
Sacks, D. B., Measurement of hemoglobin A1c A new twist on the path to harmony. Diabetes Care 2012, 35, 2674-2680.
-
(2012)
Diabetes Care
, vol.35
, pp. 2674-2680
-
-
Sacks, D.B.1
-
80
-
-
65949116587
-
Activity assays and immunoassays for plasma Renin and proreninformation provided and precautions necessary for accurate measurement
-
Campbell, D. J., Nussberger, J., Stowasser, M., Danser, A. H. J. et al., Activity assays and immunoassays for plasma Renin and proreninformation provided and precautions necessary for accurate measurement. Clin. Chem. 2009, 55, 867-877.
-
(2009)
Clin. Chem.
, vol.55
, pp. 867-877
-
-
Campbell, D.J.1
Nussberger, J.2
Stowasser, M.3
Danser, A.H.J.4
-
81
-
-
84872176550
-
Mass-encoded synthetic biomarkers for multiplexed urinary monitoring of disease
-
Kwong, G. A., Maltzahn von, G., Murugappan, G., Abudayyeh, O. et al., Mass-encoded synthetic biomarkers for multiplexed urinary monitoring of disease. Nat. Biotechnol. 2012, 31, 63-70.
-
(2012)
Nat. Biotechnol.
, vol.31
, pp. 63-70
-
-
Kwong, G.A.1
Maltzahn von, G.2
Murugappan, G.3
Abudayyeh, O.4
-
82
-
-
84876376320
-
Coagulation assays and anticoagulant monitoring
-
Funk, D. M. A., Coagulation assays and anticoagulant monitoring. Hematology 2012, 2012, 460-465.
-
(2012)
Hematology
, vol.2012
, pp. 460-465
-
-
Funk, D.M.A.1
-
83
-
-
83055180536
-
Functional imaging of proteases: recent advances in the design and application of substrate-based and activity-based probes
-
Edgington, L. E., Verdoes, M., Bogyo, M., Functional imaging of proteases: recent advances in the design and application of substrate-based and activity-based probes. Curr. Opin. Chem. Biol. 2011, 15, 798-805.
-
(2011)
Curr. Opin. Chem. Biol.
, vol.15
, pp. 798-805
-
-
Edgington, L.E.1
Verdoes, M.2
Bogyo, M.3
|