-
1
-
-
0037040607
-
Global internal standard technology for comparative proteomics
-
Chakraborty A., Regnier F.E. Global internal standard technology for comparative proteomics. J Chromatogr A 2002, 949:173-184.
-
(2002)
J Chromatogr A
, vol.949
, pp. 173-184
-
-
Chakraborty, A.1
Regnier, F.E.2
-
2
-
-
42349105213
-
Relative quantification of proteins in human cerebrospinal fluids by MS/MS using 6-plex isobaric tags
-
Dayon L., Hainard A., Licker V., Turck N., Kuhn K., Hochstrasser D.F., et al. Relative quantification of proteins in human cerebrospinal fluids by MS/MS using 6-plex isobaric tags. Anal Chem 2008, 80:2921-2931.
-
(2008)
Anal Chem
, vol.80
, pp. 2921-2931
-
-
Dayon, L.1
Hainard, A.2
Licker, V.3
Turck, N.4
Kuhn, K.5
Hochstrasser, D.F.6
-
3
-
-
31544442734
-
Synthesis of acid-cleavable light isotope-coded affinity tags (ICAT-L) for potential use in proteomic expression profiling analysis
-
Fauq A.H., Kache R., Khan M.A., Vega I.E. Synthesis of acid-cleavable light isotope-coded affinity tags (ICAT-L) for potential use in proteomic expression profiling analysis. Bioconjug Chem 2006, 17:248-254.
-
(2006)
Bioconjug Chem
, vol.17
, pp. 248-254
-
-
Fauq, A.H.1
Kache, R.2
Khan, M.A.3
Vega, I.E.4
-
4
-
-
0032875697
-
Quantitative analysis of complex protein mixtures using isotope-coded affinity tags
-
Gygi S.P., Rist B., Gerber S.A., Turecek F., Gelb M.H., Aebersold R. Quantitative analysis of complex protein mixtures using isotope-coded affinity tags. Nat Biotechnol 1999, 17:994-999.
-
(1999)
Nat Biotechnol
, vol.17
, pp. 994-999
-
-
Gygi, S.P.1
Rist, B.2
Gerber, S.A.3
Turecek, F.4
Gelb, M.H.5
Aebersold, R.6
-
5
-
-
19944432197
-
Multiplexed protein quantitation in saccharomyces cerevisiae using amine-reactive isobaric tagging reagents
-
Ross P.L., Huang Y.N., Marchese J.N., Williamson B., Parker K., Hattan S., et al. Multiplexed protein quantitation in saccharomyces cerevisiae using amine-reactive isobaric tagging reagents. Mol Cell Proteomics 2004, 3:1154-1169.
-
(2004)
Mol Cell Proteomics
, vol.3
, pp. 1154-1169
-
-
Ross, P.L.1
Huang, Y.N.2
Marchese, J.N.3
Williamson, B.4
Parker, K.5
Hattan, S.6
-
6
-
-
13244260803
-
A novel strategy for quantitative proteomics using isotope-coded protein labels
-
Schmidt A., Kellermann J., Lottspeich F. A novel strategy for quantitative proteomics using isotope-coded protein labels. Proteomics 2005, 5:4-15.
-
(2005)
Proteomics
, vol.5
, pp. 4-15
-
-
Schmidt, A.1
Kellermann, J.2
Lottspeich, F.3
-
7
-
-
0036583926
-
Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics
-
Ong S.E., Blagoev B., Kratchmarova I., Kristensen D.B., Steen H., Pandey A., et al. Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics. Mol Cell Proteomics 2002, 1:376-386.
-
(2002)
Mol Cell Proteomics
, vol.1
, pp. 376-386
-
-
Ong, S.E.1
Blagoev, B.2
Kratchmarova, I.3
Kristensen, D.B.4
Steen, H.5
Pandey, A.6
-
8
-
-
33644669753
-
Automated comparative proteomics based on multiplex tandem mass spectrometry and stable isotope labeling
-
Zhang G., Neubert T.A. Automated comparative proteomics based on multiplex tandem mass spectrometry and stable isotope labeling. Mol Cell Proteomics 2006, 5:401-411.
-
(2006)
Mol Cell Proteomics
, vol.5
, pp. 401-411
-
-
Zhang, G.1
Neubert, T.A.2
-
9
-
-
10744233766
-
Quantification of proteins and metabolites by mass spectrometry without isotopic labeling or spiked standards
-
Wang W., Zhou H., Lin H., Roy S., Shaler T.A., Hill L.R., et al. Quantification of proteins and metabolites by mass spectrometry without isotopic labeling or spiked standards. Anal Chem 2003, 75:4818-4826.
-
(2003)
Anal Chem
, vol.75
, pp. 4818-4826
-
-
Wang, W.1
Zhou, H.2
Lin, H.3
Roy, S.4
Shaler, T.A.5
Hill, L.R.6
-
10
-
-
51649124498
-
Calculating absolute and relative protein abundance from mass spectrometry-based protein expression data
-
Vogel C., Marcotte E.M. Calculating absolute and relative protein abundance from mass spectrometry-based protein expression data. Nat Protoc 2008, 3:1444-1451.
-
(2008)
Nat Protoc
, vol.3
, pp. 1444-1451
-
-
Vogel, C.1
Marcotte, E.M.2
-
11
-
-
54049090766
-
Selected reaction monitoring for quantitative proteomics: a tutorial
-
Lange V., Picotti P., Domon B., Aebersold R. Selected reaction monitoring for quantitative proteomics: a tutorial. Mol Syst Biol 2008, 4:222.
-
(2008)
Mol Syst Biol
, vol.4
, pp. 222
-
-
Lange, V.1
Picotti, P.2
Domon, B.3
Aebersold, R.4
-
12
-
-
26844559000
-
Exponentially modified protein abundance index (emPAI) for estimation of absolute protein amount in proteomics by the number of sequenced peptides per protein
-
Ishihama Y., Oda Y., Tabata T., Sato T., Nagasu T., Rappsilber J., et al. Exponentially modified protein abundance index (emPAI) for estimation of absolute protein amount in proteomics by the number of sequenced peptides per protein. Mol Cell Proteomics 2005, 4:1265-1272.
-
(2005)
Mol Cell Proteomics
, vol.4
, pp. 1265-1272
-
-
Ishihama, Y.1
Oda, Y.2
Tabata, T.3
Sato, T.4
Nagasu, T.5
Rappsilber, J.6
-
13
-
-
34147173417
-
On the proper use of mass accuracy in proteomics
-
Zubarev R., Mann M. On the proper use of mass accuracy in proteomics. Mol Cell Proteomics 2007, 6:377-381.
-
(2007)
Mol Cell Proteomics
, vol.6
, pp. 377-381
-
-
Zubarev, R.1
Mann, M.2
-
14
-
-
79953278916
-
Ultra-high-pressure RPLC hyphenated to an LTQ-Orbitrap Velos reveals a linear relation between peak capacity and number of identified peptides
-
Kocher T., Swart R., Mechtler K. Ultra-high-pressure RPLC hyphenated to an LTQ-Orbitrap Velos reveals a linear relation between peak capacity and number of identified peptides. Anal Chem 2011, 83:2699-2704.
-
(2011)
Anal Chem
, vol.83
, pp. 2699-2704
-
-
Kocher, T.1
Swart, R.2
Mechtler, K.3
-
15
-
-
57449099865
-
MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
-
Cox J., Mann M. MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification. Nat Biotechnol 2008, 26:1367-1372.
-
(2008)
Nat Biotechnol
, vol.26
, pp. 1367-1372
-
-
Cox, J.1
Mann, M.2
-
16
-
-
42249108173
-
OpenMS - an open-source software framework for mass spectrometry
-
Sturm M., Bertsch A., Gropl C., Hildebrandt A., Hussong R., Lange E., et al. OpenMS - an open-source software framework for mass spectrometry. BMC Bioinformatics 2008, 9:163.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 163
-
-
Sturm, M.1
Bertsch, A.2
Gropl, C.3
Hildebrandt, A.4
Hussong, R.5
Lange, E.6
-
17
-
-
84855900887
-
Über die Verdauung der Eiweisstoffe durch den Pankreassaft
-
Kühne W.F. Über die Verdauung der Eiweisstoffe durch den Pankreassaft. Virchows Arch 1876, 39.
-
(1876)
Virchows Arch
, vol.39
-
-
Kühne, W.F.1
-
18
-
-
3042815334
-
Trypsin cleaves exclusively C-terminal to arginine and lysine residues
-
Olsen J.V., Ong S.E., Mann M. Trypsin cleaves exclusively C-terminal to arginine and lysine residues. Mol Cell Proteomics 2004, 3:608-614.
-
(2004)
Mol Cell Proteomics
, vol.3
, pp. 608-614
-
-
Olsen, J.V.1
Ong, S.E.2
Mann, M.3
-
19
-
-
34848903890
-
The implications of proteolytic background for shotgun proteomics
-
Picotti P., Aebersold R., Domon B. The implications of proteolytic background for shotgun proteomics. Mol Cell Proteomics 2007, 6:1589-1598.
-
(2007)
Mol Cell Proteomics
, vol.6
, pp. 1589-1598
-
-
Picotti, P.1
Aebersold, R.2
Domon, B.3
-
20
-
-
16344377506
-
Tryptic transpeptidation products observed in proteome analysis by liquid chromatography-tandem mass spectrometry
-
Schaefer H., Chamrad D.C., Marcus K., Reidegeld K.A., Bluggel M., Meyer H.E. Tryptic transpeptidation products observed in proteome analysis by liquid chromatography-tandem mass spectrometry. Proteomics 2005, 5:846-852.
-
(2005)
Proteomics
, vol.5
, pp. 846-852
-
-
Schaefer, H.1
Chamrad, D.C.2
Marcus, K.3
Reidegeld, K.A.4
Bluggel, M.5
Meyer, H.E.6
-
21
-
-
0000413586
-
Proteolytic activity of pseudotrypsin
-
Keil-Dlouha V.V., Zylber N., Imhoff J., Tong N., Keil B. Proteolytic activity of pseudotrypsin. FEBS Lett 1971, 16:291-295.
-
(1971)
FEBS Lett
, vol.16
, pp. 291-295
-
-
Keil-Dlouha, V.V.1
Zylber, N.2
Imhoff, J.3
Tong, N.4
Keil, B.5
-
22
-
-
79957655756
-
Microscale affinity purification of trypsin reduces background peptides in matrix-assisted laser desorption/ionization mass spectrometry of protein digests
-
Chamrad I., Strouhal O., Rehulka P., Lenobel R., Sebela M. Microscale affinity purification of trypsin reduces background peptides in matrix-assisted laser desorption/ionization mass spectrometry of protein digests. J Proteomics 2011, 74(7):948-957.
-
(2011)
J Proteomics
, vol.74
, Issue.7
, pp. 948-957
-
-
Chamrad, I.1
Strouhal, O.2
Rehulka, P.3
Lenobel, R.4
Sebela, M.5
-
23
-
-
27344437335
-
Inactivation of Crystalline Trypsin
-
Kunitz M., Northrop J.H. Inactivation of Crystalline Trypsin. J Gen Physiol 1934, 17(4):591-615.
-
(1934)
J Gen Physiol
, vol.17
, Issue.4
, pp. 591-615
-
-
Kunitz, M.1
Northrop, J.H.2
-
24
-
-
77957344363
-
A quantitative study of the effects of chaotropic agents, surfactants, and solvents on the digestion efficiency of human plasma proteins by trypsin
-
Proc J.L., Kuzyk M.A., Hardie D.B., Yang J., Smith D.S., Jackson A.M., et al. A quantitative study of the effects of chaotropic agents, surfactants, and solvents on the digestion efficiency of human plasma proteins by trypsin. J Proteome Res 2010, 9:5422-5437.
-
(2010)
J Proteome Res
, vol.9
, pp. 5422-5437
-
-
Proc, J.L.1
Kuzyk, M.A.2
Hardie, D.B.3
Yang, J.4
Smith, D.S.5
Jackson, A.M.6
-
25
-
-
0142072517
-
Low-attomole electrospray ionization MS and MS/MS analysis of protein tryptic digests using 20-microm-i.d. polystyrene-divinylbenzene monolithic capillary columns
-
Ivanov A.R., Zang L., Karger B.L. Low-attomole electrospray ionization MS and MS/MS analysis of protein tryptic digests using 20-microm-i.d. polystyrene-divinylbenzene monolithic capillary columns. Anal Chem 2003, 75:5306-5316.
-
(2003)
Anal Chem
, vol.75
, pp. 5306-5316
-
-
Ivanov, A.R.1
Zang, L.2
Karger, B.L.3
-
26
-
-
27844559478
-
The human platelet membrane proteome reveals several new potential membrane proteins
-
Moebius J., Zahedi R.P., Lewandrowski U., Berger C., Walter U., Sickmann A. The human platelet membrane proteome reveals several new potential membrane proteins. Mol Cell Proteomics 2005, 4:1754-1761.
-
(2005)
Mol Cell Proteomics
, vol.4
, pp. 1754-1761
-
-
Moebius, J.1
Zahedi, R.P.2
Lewandrowski, U.3
Berger, C.4
Walter, U.5
Sickmann, A.6
-
27
-
-
29244448703
-
Parts per million mass accuracy on an Orbitrap mass spectrometer via lock mass injection into a C-trap
-
Olsen J.V., de Godoy L.M., Li G., Macek B., Mortensen P., Pesch R., et al. Parts per million mass accuracy on an Orbitrap mass spectrometer via lock mass injection into a C-trap. Mol Cell Proteomics 2005, 4:2010-2021.
-
(2005)
Mol Cell Proteomics
, vol.4
, pp. 2010-2021
-
-
Olsen, J.V.1
de Godoy, L.M.2
Li, G.3
Macek, B.4
Mortensen, P.5
Pesch, R.6
-
28
-
-
84988074679
-
Improved silver staining of plant proteins, RNA and DNA in polyacrylamide gels
-
Blum H., Beier H., Gross H.J. Improved silver staining of plant proteins, RNA and DNA in polyacrylamide gels. Electrophoresis 1987, 8:93-99.
-
(1987)
Electrophoresis
, vol.8
, pp. 93-99
-
-
Blum, H.1
Beier, H.2
Gross, H.J.3
-
29
-
-
34447290244
-
Silver- and Coomassie-staining protocols: detection limits and compatibility with ESI MS
-
Winkler C., Denker K., Wortelkamp S., Sickmann A. Silver- and Coomassie-staining protocols: detection limits and compatibility with ESI MS. Electrophoresis 2007, 28:2095-2099.
-
(2007)
Electrophoresis
, vol.28
, pp. 2095-2099
-
-
Winkler, C.1
Denker, K.2
Wortelkamp, S.3
Sickmann, A.4
-
30
-
-
79551536399
-
Strong cation exchange (SCX) based analytical methods for the targeted analysis of protein post-translational modifications
-
Mohammed S., Heck A. Strong cation exchange (SCX) based analytical methods for the targeted analysis of protein post-translational modifications. Curr Opin Biotechnol 2011, 22:9-16.
-
(2011)
Curr Opin Biotechnol
, vol.22
, pp. 9-16
-
-
Mohammed, S.1
Heck, A.2
-
31
-
-
36349019291
-
Enhanced N-glycosylation site analysis of sialoglycopeptides by strong cation exchange prefractionation applied to platelet plasma membranes
-
Lewandrowski U., Zahedi R.P., Moebius J., Walter U., Sickmann A. Enhanced N-glycosylation site analysis of sialoglycopeptides by strong cation exchange prefractionation applied to platelet plasma membranes. Mol Cell Proteomics 2007, 6:1933-1941.
-
(2007)
Mol Cell Proteomics
, vol.6
, pp. 1933-1941
-
-
Lewandrowski, U.1
Zahedi, R.P.2
Moebius, J.3
Walter, U.4
Sickmann, A.5
-
32
-
-
9444223130
-
Inhibition of Chymotrypsin Activity in Crystalline Trypsin Preparations
-
Kostka V., Carpenter F.H. Inhibition of Chymotrypsin Activity in Crystalline Trypsin Preparations. J Biol Chem 1964, 239:1799-1803.
-
(1964)
J Biol Chem
, vol.239
, pp. 1799-1803
-
-
Kostka, V.1
Carpenter, F.H.2
-
33
-
-
0037795741
-
Absolute quantification of proteins and phosphoproteins from cell lysates by tandem MS
-
Gerber S.A., Rush J., Stemman O., Kirschner M.W., Gygi S.P. Absolute quantification of proteins and phosphoproteins from cell lysates by tandem MS. Proc Natl Acad Sci USA 2003, 100:6940-6945.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 6940-6945
-
-
Gerber, S.A.1
Rush, J.2
Stemman, O.3
Kirschner, M.W.4
Gygi, S.P.5
|