DNA-templated lithography and nanofabrication for the fabrication of nanoscale electronic circuitry

Critical Reviews in Analytical Chemistry

Volumn 44, Issue 4, 2014, Pages 354-370

  Gates, Elisabeth P ^a   Dearden, Andrew M ^a   Woolley, Adam T ^a  

^a Brigham Young University   (United States)

Author keywords

DNA metallization; DNA nanotechnology; DNA origami; nanodevices; nanoelectronics; nanoparticles

Indexed keywords

NANOELECTRONICS; NANOPARTICLES; NANOSTRUCTURED MATERIALS; NANOSTRUCTURES;

DESIGN AND ASSEMBLIES; DNA NANOTECHNOLOGY; DNA ORIGAMIS; ELECTRONICS APPLICATIONS; NANO-DEVICES; NANOSCALE ELECTRONICS; PRECISE POSITIONING; THREE-DIMENSIONAL NANOSTRUCTURES;

DNA;

DESIGN; DNA; NANOTECHNOLOGY; PRECISION;

DNA; METAL; NANOMATERIAL;

CHEMICAL STRUCTURE; CHEMISTRY; CONFORMATION; DEVICES; ELECTRONICS; NANOTECHNOLOGY; PROCEDURES; ULTRASTRUCTURE;

DNA; ELECTRONICS; METALS; MODELS, MOLECULAR; NANOSTRUCTURES; NANOTECHNOLOGY; NUCLEIC ACID CONFORMATION;

EID: 84900854768     PISSN: 10408347     EISSN: 15476510     Source Type: Journal    
DOI: 10.1080/10408347.2014.910636     Document Type: Article

References (161)

1. Acuna, G. P.; Bucher, M.; Stein, I. H.; Steinhauer, C.; Kuzyk, A.; Holzmeister, P.; Schreiber, R.; Moroz, A.; Stefani, F. D.; Liedl, T.; Simmel, F. C.; Tinnefeld, P. Distance Dependence of Single-Fluorophore Quenching by Gold Nanoparticles Studied on DNA Origami. ACS Nano 2012a, 6(4), 3189-3195.
2. Acuna, G. P.; Möller, F. M.; Holzmeister, P.; Beater, S.; Lalkens, B.; Tinnefeld, P. Fluorescence Enhancement at Docking Sites of DNA-Directed Self-Assembled Nanoantennas. Science 2012b, 338(6106), 506-510.
3. Aherne, D.; Satti, A.; Fitzmaurice, D. Diameter-Dependent Evolution of Failure Current Density of Highly Conducting DNA-Templated Gold Nanowires. Nanotechnology 2007, 18 (12). 125205.
4. Aldaye, F. A.; Palmer, A. L.; Sleiman, H. F. Assembling Materials with DNA as the Guide. Science 2008, 321(5897), 1795-1799.
5. Andersen, E. S.; Dong, M.; Nielsen, M. M.; Jahn, K.; Lind-Thomsen, A.; Mamdouh, W.; Gothelf, K. V.; Besenbacher, F.; Kjems, J. DNA Origami Design of Dolphin-Shaped Structures with Flexible Tails. ACS Nano 2008, 2(6), 1213-1218.
6. Andersen, E. S.; Dong, M.; Nielsen, M. M.; Jahn, K.; Subramani, R.; Mamdouh, W.; Golas, M. M.; Sander, B.; Stark, H.; Oliveira, C. L. P.; Pedersen, J. S.; Birkedal, V.; Besenbacher, F.; Gothelf, K. V.; Kjems, J. Self-Assembly of a Nanoscale DNA Box with a Controllable Lid. Nature 2009, 459(7243), 73-77.
7. Barish, R. D.; Schulman, R.; Rothemund, P. W. K.; Winfree, E. An Information-Bearing Seed for Nucleating Algorithmic Self-Assembly. Proc. Natl. Acad. Sci. USA 2009, 106(15), 6054-6059.
8. Bath, J.; Turberfield, A. J. DNA Nanomachines. Nat. Nanotechnol. 2007, 2(5), 275-284.
9. Becerril, H. A.; Woolley, A. T. DNA-Templated Nanofabrication. Chem. Soc. Rev. 2009, 38(2), 329-337.
10. Becerril, H. A.; Stoltenberg, R. M.; Monson, C. F.; Woolley, A. T. Ionic Surface Masking for Low Background in Single- and Double-Stranded DNA-Templated Silver and Copper Nanorods. J. Mater. Chem. 2004, 14(4), 611-616.
11. Becerril, H. A.; Ludtke, P.; Willardson, B. M.; Woolley, A. T. DNA-Templated Nickel Nanostructures and Protein Assemblies. Langmuir 2006, 22(24), 10140-10144.
12. Birac, J. J.; Sherman, W. B.; Kopatsch, J.; Constantinou, P. E.; Seeman, N. C. Architecture with GIDEON, a Program for Design in Structural DNA Nanotechnology. J. Mol. Graph. Model. 2006, 25(4), 470-480.
13. Braun, E.; Eichen, Y.; Sivan, U.; Ben-Yoseph, G. DNA-Templated Assembly and Electrode Attachment of a Conducting Silver Wire. Nature 1998, 391(6669), 775-778.
14. Castro, C. E.; Kilchherr, F.; Kim, D.-N.; Shiao, E. L.; Wauer, T.; Wortmann, P.; Bathe, M.; Dietz, H. A Primer to Scaffolded DNA Origami. Nat. Methods 2011, 8, 221-229.
15. Chen, J. H.; Seeman, N. C. Synthesis from DNA of a Molecule with the Connectivity of a Cube. Nature 1991, 350(6319), 631-633.
16. Cheng, J. Y.; Ross, C. A.; Smith, H. I.; Thomas, E. L. Templated Self-Assembly of Block Copolymers: Top-Down Helps Bottom-Up. Adv. Mater. 2006, 18(19), 2505-2521.
17. Chhabra, R.; Sharma, J.; Ke, Y. G.; Liu, Y.; Rinker, S.; Lindsay, S.; Yan, H. Spatially Addressable Multiprotein Nanoarrays Templated by Aptamer-Tagged DNA Nanoarchitectures. J. Am. Chem. Soc. 2007, 129(34), 10304-10305.
18. Deng, Z. X.; Mao, C. D. DNA-Templated Fabrication of 1D Parallel and 2D Crossed Metallic Nanowire Arrays. Nano Lett. 2003, 3(11), 1545-1548.
19. Dietz, H.; Douglas, S. M.; Shih, W. M. Folding DNA into Twisted and Curved Nanoscale Shapes. Science 2009, 325(5941), 725-730.
20. Ding, B. Q.; Sha, R. J.; Seeman, N. C. Pseudohexagonal 2D DNA Crystals from Double Crossover Cohesion. J. Am. Chem. Soc. 2004, 126(33), 10230-10231.
21. Ding, B. Q.; Deng, Z. T.; Yan, H.; Cabrini, S.; Zuckermann, R. N.; Bokor, J. Gold Nanoparticle Self-Similar Chain Structure Organized by DNA Origami. J. Am. Chem. Soc. 2010, 132(10), 3248-3249.
22. Douglas, S. M.; Chou, J. J.; Shih, W. M. DNA-Nanotube-Induced Alignment of Membrane Proteins for NMR Structure Determination. Proc. Natl. Acad. Sci. USA 2007, 104(16), 6644-6648.
23. Douglas, S. M.; Dietz, H.; Liedl, T.; Hogberg, B.; Graf, F.; Shih, W. M. Self-Assembly of DNA into Nanoscale Three-Dimensional Shapes. Nature 2009a, 459(7245), 414-418.
24. Douglas, S. M.; Marblestone, A. H.; Teerapittayanon, S.; Vazquez, A.; Church, G. M.; Shih, W. M. Rapid Prototyping of 3D DNA-Origami Shapes with CaDNAno. Nucleic Acids Res. 2009b, 37(15), 5001-5006.
25. Douglas, S. M.; Bachelet, I.; Church, G. M. A Logic-Gated Nanorobot for Targeted Transport of Molecular Payloads. Science 2012, 335(6070), 831-834.
26. Endo, M.; Hidaka, K.; Kato, T.; Namba, K.; Sugiyama, H. DNA Prism Structures Constructed by Folding of Multiple Rectangular Arms. J. Am. Chem. Soc. 2009, 131(43), 15570-15571.
27. Endo, M.; Sugita, T.; Katsuda, Y.; Hidaka, K.; Sugiyama, H. Programmed-Assembly System Using DNA Jigsaw Pieces. Chemistry 2010, 16(18), 5362-5368.
28. Eskelinen, A. P.; Kuzyk, A.; Kaltiaisenaho, T. K.; Timmermans, M. Y.; Nasibulin, A. G.; Kauppinen, E. I.; Torma, P. Assembly of Single-Walled Carbon Nanotubes on DNA-Origami Templates through Streptavidin-Biotin Interaction. Small 2011, 7(6), 746-750.
29. Ford, W. E.; Harnack, O.; Yasuda, A.; Wessels, J. M. Platinated DNA as Precursors to Templated Chains of Metal Nanoparticles. Adv. Mater. 2001, 13(23), 1793-1797.
30. Fujibayashi, K.; Hariadi, R.; Park, S. H.; Winfree, E.; Murata, S. Toward Reliable Algorithmic Self-Assembly of DNA Tiles: A Fixed-Width Cellular Automaton Pattern. Nano Lett. 2008, 8(7), 1791-1797.
31. Geng, Y. L.; Liu, J. F.; Pound, E.; Gyawali, S.; Harb, J. N.; Woolley, A. T. Rapid Metallization of Lambda DNA and DNA Origami Using a Pd Seeding Method. J. Mater. Chem. 2011, 21(32), 12126-12131.
32. Geng, Y. L.; Pearson, A. C.; Gates, E. P.; Uprety, B.; Davis, R. C.; Harb, J. N.; Woolley, A. T. Electrically Conductive Gold- and Copper-Metallized DNA Origami Nanostructures. Langmuir 2013, 29(10), 3482-3490.
33. Goodman, R. P.; Berry, R. M.; Turberfield, A. J. The Single-Step Synthesis of a DNA Tetrahedron. Chem. Commun. 2004, (12), 1372-1373.
34. Goodman, R. P.; Schaap, I. A. T.; Tardin, C. F.; Erben, C. M.; Berry, R. M.; Schmidt, C. F.; Turberfield, A. J. Rapid Chiral Assembly of Rigid DNA Building Blocks for Molecular Nanofabrication. Science 2005, 310(5754), 1661-1665.
35. Goodman, R. P.; Heilemann, M.; Doose, S.; Erben, C. M.; Kapanidis, A. N.; Turberfield, A. J. Reconfigurable, Braced, Three-Dimensional DNA Nanostructures. Nat. Nanotechnol. 2008, 3(2), 93-96.
36. Gu, Q.; Haynie, D. T. Palladium Nanoparticle-Controlled Growth of Magnetic Cobalt Nanowires on DNA Templates. Mater. Lett. 2008, 62(17-18), 3047-3050.
37. Gu, Q.; Cheng, C. D.; Gonela, R.; Suryanarayanan, S.; Anabathula, S.; Dai, K.; Haynie, D. T. DNA Nanowire Fabrication. Nanotechnology 2006a, 17(1), R14-R25.
38. Gu, Q.; Cheng, C. D.; Suryanarayanan, S.; Dai, K.; Haynie, D. T. DNA-Templated Fabrication of Nickel Nanocluster Chains. Physica E 2006b, 33(1), 92-98.
39. Gu, H. Z.; Chao, J.; Xiao, S. J.; Seeman, N. C. A Proximity-Based Programmable DNA Nanoscale Assembly Line. Nature 2010, 465(7295), 202-205.
40. Han, D. R.; Pal, S.; Liu, Y.; Yan, H. Folding and Cutting DNA into Reconfigurable Topological Nanostructures. Nat. Nanotechnol. 2010, 5(10), 712-717.
41. Han, D. R.; Pal, S.; Nangreave, J.; Deng, Z. T.; Liu, Y.; Yan, H. DNA Origami with Complex Curvatures in Three-Dimensional Space. Science 2011, 332(6027), 342-346.
42. Han, D. R.; Pal, S.; Yang, Y.; Jiang, S. X.; Nangreave, J.; Liu, Y.; Yan, H. DNA Gridiron Nanostructures Based on Four-Arm Junctions. Science 2013, 339(6126), 1412-1415.
43. Harnack, O.; Ford, W. E.; Yasuda, A.; Wessels, J. M. Tris(hydroxymethyl)Phosphine-Capped Gold Particles Templated by DNA as Nanowire Precursors. Nano Lett. 2002, 2(9), 919-923.
44. He, Y.; Chen, Y.; Liu, H. P.; Ribbe, A. E.; Mao, C. D. Self-Assembly of Hexagonal DNA Two-Dimensional (2D) Arrays. J. Am. Chem. Soc. 2005a, 127(35), 12202-12203.
45. He, Y.; Tian, Y.; Chen, Y.; Deng, Z. X.; Ribbe, A. E.; Mao, C. D. Sequence Symmetry as a Tool for Designing DNA Nanostructures. Angew. Chem. Int. Ed. 2005b, 44(41), 6694-6696.
46. He, Y.; Tian, Y.; Ribbe, A. E.; Mao, C. D. Highly Connected Two-Dimensional Crystals of DNA Six-Point-Stars. J. Am. Chem. Soc. 2006, 128(50), 15978-15979.
47. Hogberg, B.; Liedl, T.; Shih, W. M. Folding DNA Origami from a Double-Stranded Source of Scaffold. J.Am. Chem. Soc. 2009, 131(26), 9154-9155.
48. Hughes, W. L.; Bui, H.; Onodera, C.; Kidwell, C.; Tan, Y.; Graugnard, E.; Kuang, W.; Lee, J.; Knowlton, W. B.; Yurke, B. Programmable Periodicity of Quantum Dot Arrays with DNA Origami Nanotubes. Nano Lett. 2010, 10(9), 3367-3372.
49. Hung, A. M.; Micheel, C. M.; Bozano, L. D.; Osterbur, L. W.; Wallraff, G. M.; Cha, J. N. Large-Area Spatially Ordered Arrays of Gold Nanoparticles Directed by Lithographically Confined DNA Origami. Nat. Nanotechnol. 2010, 5(2), 121-126.
50. ITRS. 2012. International Technology Roadmap for Semiconductors; 2012 Update Overview. http://www.itrs.net/
51. Jungmann, R.; Liedl, T.; Sobey, T. L.; Shih, W.; Simmel, F. C. Isothermal Assembly of DNA Origami Structures Using Denaturing Agents. J. Am. Chem. Soc. 2008, 130(31), 10062-10063.
52. Ke, Y. G.; Lindsay, S.; Chang, Y.; Liu, Y.; Yan, H. Self-Assembled Water-Soluble Nucleic Acid Probe Tiles for Label-Free RNA Hybridization Assays. Science 2008a, 319(5860), 180-183.
53. Ke, Y. G.; Nangreave, J.; Yan, H.; Lindsay, S.; Liu, Y. Developing DNA Tiles for Oligonucleotide Hybridization Assay with Higher Accuracy and Efficiency. Chem. Commun. 2008b, (43), 5622-5624.
54. Ke, Y.; Douglas, S. M.; Liu, M.; Sharma, J.; Cheng, A.; Leung, A.; Liu, Y.; Shih, W. M.; Yan, H. Multilayer DNA Origami Packed on a Square Lattice. J. Am. Chem. Soc. 2009a, 131(43), 15903-15908.
55. Ke, Y.; Sharma, J.; Liu, M.; Jahn, K.; Liu, Y.; Yan, H. Scaffolded DNA Origami of a DNA Tetrahedron Molecular Container. Nano Lett. 2009b, 9(6), 2445-2447.
56. Ke, Y. G.; Bellot, G.; Voigt, N. V.; Fradkov, E.; Shih, W. M. Two Design Strategies for Enhancement of Multilayer-DNA-Origami Folding: Underwinding for Specific Intercalator Rescue and Staple-Break Positioning. Chem. Sci. 2012a, 3(8), 2587-2597.
57. Ke, Y. G.; Ong, L. L.; Shih, W. M.; Yin, P. Three-Dimensional Structures Self-Assembled from DNA Bricks. Science 2012b, 338(6111), 1177-1183.
58. Ke, Y. G.; Voigt, N. V.; Gothelf, K. V.; Shih, W. M. Multilayer DNA Origami Packed on Hexagonal and Hybrid Lattices. J. Am. Chem. Soc. 2012c, 134(3), 1770-1774.
59. Keren, K.; Krueger, M.; Gilad, R.; Ben-Yoseph, G.; Sivan, U.; Braun, E. Sequence-Specific Molecular Lithography on Single DNA Molecules. Science 2002, 297(5578), 72-75.
60. Keren, K.; Berman, R. S.; Buchstab, E.; Sivan, U.; Braun, E. DNA-Templated Carbon Nanotube Field-Effect Transistor. Science 2003, 302(5649), 1380-1382.
61. Keren, K.; Berman, R. S.; Braun, E. Patterned DNA Metallization by Sequence-Specific Localization of a Reducing Agent. Nano Lett. 2004, 4(2), 323-326.
62. Kumar, A.; Pattarkine, M.; Bhadbhade, M.; Mandale, A. B.; Ganesh, K. N.; Datar, S. S.; Dharmadhikari, C. V.; Sastry, M. Linear Superclusters of Colloidal Gold Particles by Electrostatic Assembly on DNA Templates. Adv. Mater. 2001, 13(5), 341-344.
63. Kuzuya, A.; Komiyama, M. Design and Construction of a Box-Shaped 3D-DNA Origami. Chem. Commun. 2009, (28), 4182-4184.
64. Kuzuya, A.; Komiyama, M. DNA Origami: Fold, Stick, and Beyond. Nanoscale 2010, 2(3), 310-322.
65. Kuzuya, A.; Numajiri, K.; Komiyama, M. Accommodation of a Single Protein Guest in Nanometer-Scale Wells Embedded in a "DNA Nanotape." Angew. Chem. Int. Ed. 2008, 47(18), 3400-3402.
66. Kuzuya, A.; Kimura, M.; Numajiri, K.; Koshi, N.; Ohnishi, T.; Okada, F.; Komiyama, M. Precisely Programmed and Robust 2D Streptavidin Nanoarrays by Using Periodical Nanometer-Scale Wells Embedded in DNA Origami Assembly. Chembiochem 2009, 10(11), 1811-1815.
67. Kuzyk, A.; Laitinen, K. T.; Törmä, P. DNA Origami as a Nanoscale Template for Protein Assembly. Nanotechnology 2009, 20(23), 235305.
68. Kuzyk, A.; Schreiber, R.; Fan, Z. Y.; Pardatscher, G.; Roller, E. M.; Hogele, A.; Simmel, F. C.; Govorov, A. O.; Liedl, T. DNA-Based Self-Assembly of Chiral Plasmonic Nanostructures with Tailored Optical Response. Nature 2012, 483(7389), 311-314.
69. LaBean, T. H.; Yan, H.; Kopatsch, J.; Liu, F. R.; Winfree, E.; Reif, J. H.; Seeman, N. C. Construction, Analysis, Ligation, and Self-Assembly of DNA Triple Crossover Complexes. J. Am. Chem. Soc. 2000, 122(9), 1848-1860.
70. Li, X. J.; Yang, X. P.; Qi, J.; Seeman, N. C. Antiparallel DNA Double Crossover Molecules as Components for Nanoconstruction. J. Am. Chem. Soc. 1996, 118(26), 6131-6140.
71. Li, Z.; Liu, M. H.; Wang, L.; Nangreave, J.; Yan, H; Liu, Y. Molecular Behavior of DNA Origami in Higher-Order Self-Assembly. J. Am. Chem. Soc. 2010, 132(38), 13545-13552.
72. Li, Z.; Wang, L.; Yan, H.; Liu, Y. Effect of DNA Hairpin Loops on the Twist of Planar DNA Origami Tiles. Langmuir 2012, 28(4), 1959-1965.
73. Liddle, J. A.; Gallatin, G. M. Lithography, Metrology and Nanomanufacturing. Nanoscale 2011, 3(7), 2679-2688.
74. Liedl, T.; Hogberg, B.; Tytell, J.; Ingber, D. E.; Shih, W. M. Self-Assembly of Three-Dimensional Prestressed Tensegrity Structures from DNA. Nat. Nanotechnol. 2010, 5(7), 520-524.
75. Lin, C. X.; Liu, Y.; Rinker, S.; Yan, H. DNA Tile Based Self-Assembly: Building Complex Nanoarchitectures. Chemphyschem 2006, 7(8), 1641-1647.
76. Liu, H.; Liu, D. S. DNA Nanomachines and Their Functional Evolution. Chem Commun 2009, (19), 2625-2636.
77. Liu, Y.; Yan, H. Designer Curvature. Science 2009, 325(5941), 685-686.
78. Liu, D.; Park, S. H.; Reif, J. H.; LaBean, T. H. DNA Nanotubes Self-Assembled from Triple-Crossover Tiles as Templates for Conductive Nanowires. Proc. Natl. Acad. Sci. USA 2004, 101(3), 717-722.
79. Liu, H. P.; Chen, Y.; He, Y.; Ribbe, A. E.; Mao, C. D. Approaching the Limit: Can One DNA Oligonucleotide Assemble into Large Nanostructures? Angew. Chem. Int. Ed. 2006, 45(12), 1942-1945.
80. Liu, J. F.; Geng, Y. L.; Pound, E.; Gyawali, S.; Ashton, J. R.; Hickey, J.; Woolley, A. T.; Harb, J. N. Metallization of Branched DNA Origami for Nanoelectronic Circuit Fabrication. ACS Nano 2011a, 5(3), 2240-2247.
81. Liu, W. Y.; Zhong, H.; Wang, R. S.; Seeman, N. C. Crystalline Two-Dimensional DNA-Origami Arrays. Angew. Chem. Int. Ed. 2011b, 50(1), 264-267.
82. 3 Nanowires by Galvanic Displacement. Langmuir 2013, 29(35), 11176-11184.
83. Lu, W.; Lieber, C. M. Nanoelectronics from the Bottom Up. Nat. Mater. 2007, 6(11), 841-850.
84. Lund, K.; Manzo, A. J.; Dabby, N.; Michelotti, N.; Johnson-Buck, A.; Nangreave, J.; Taylor, S.; Pei, R. J.; Stojanovic, M. N.; Walter, N. G.; Winfree, E.; Yan, H. Molecular Robots Guided by Prescriptive Landscapes. Nature 2010, 465(7295), 206-210.
85. Madou, M. J. Fundamentals of Microfabrication, 2nd ed.; CRC Press: Boca Raton, Fla., 2002.
86. Mao, C. D.; Sun, W. Q.; Seeman, N. C. Designed Two-Dimensional DNA Holliday Junction Arrays Visualized by Atomic Force Microscopy. J. Am. Chem. Soc. 1999, 121(23), 5437-5443.
87. Mathieu, F.; Liao, S. P.; Kopatscht, J.; Wang, T.; Mao, C. D.; Seeman, N. C. Six-Helix Bundles Designed from DNA. Nano Lett. 2005, 5(4), 661-665.
88. Maubach, G.; Fritzsche, W. Precise Positioning of Individual DNA Structures in Electrode Gaps by Self-Organization onto Guiding Microstructures. Nano Lett. 2004, 4(4), 607-611.
89. Maune, H. T.; Han, S. P.; Barish, R. D.; Bockrath, M.; Goddard, W. A.; Rothemund, P. W. K.; Winfree, E. Self-Assembly of Carbon Nanotubes into Two-Dimensional Geometries Using DNA Origami Templates. Nat. Nanotechnol. 2010, 5(1), 61-66.
90. Mertig, M.; Ciacchi, L. C.; Seidel, R.; Pompe, W.; De Vita, A. DNA as a Selective Metallization Template. Nano Lett. 2002, 2(8), 841-844.
91. Monson, C. F.; Woolley, A. T. DNA-Templated Construction of Copper Nanowires. Nano Lett. 2003, 3(3), 359-363.
92. Moore, G. E. Cramming More Components onto Integrated Circuits. Electronics 1965, 38(8), 82-85.
93. Moore, G. E. Progress in Digital Integrated Electronics. In 1975 International Electron Devices Meeting; IEEE: New York, 1975; pp 11-13.
94. Nangreave, J.; Han, D. R.; Liu, Y.; Yan, H. DNA Origami: A History and Current Perspective. Curr. Opin. Chem. Biol. 2010, 14(5), 608-615.
95. Nguyen, K.; Monteverde, M.; Filoramo, A.; Goux-Capes, L.; Lyonnais, S.; Jegou, P.; Viel, P.; Goffman, M.; Bourgoin, J. P. Synthesis of Thin and Highly Conductive DNA-Based Palladium Nanowires. Adv. Mater. 2008, 20(6), 1099-1104.
96. Omabegho, T.; Sha, R.; Seeman, N. C. A Bipedal DNA Brownian Motor with Coordinated Legs. Science 2009, 324(5923), 67-71.
97. Ongaro, A.; Griffin, F.; Beeeher, P.; Nagle, L.; Iacopino, D.; Quinn, A.; Redmond, G.; Fitzmaurice, D. DNA-Templated Assembly of Conducting Gold Nanowires between Gold Electrodes on a Silicon Oxide Substrate. Chem. Mater. 2005, 17(8), 1959-1964.
98. Ozbay, E. Plasmonics: Merging Photonics and Electronics at Nanoscale Dimensions. Science 2006, 311(5758), 189-193.
99. Pal, S.; Deng, Z. T.; Ding, B. Q.; Yan, H.; Liu, Y. DNA-Origami-Directed Self-Assembly of Discrete Silver-Nanoparticle Architectures. Angew. Chem. Int. Ed. 2010, 49(15), 2700-2704.
100. Park, S. H.; Barish, R.; Li, H. Y.; Reif, J. H.; Finkelstein, G.; Yan, H.; LaBean, T. H. Three-Helix Bundle DNA Tiles Self-Assemble into 2D Lattice or 1D Templates for Silver Nanowires. Nano Lett. 2005, 5(4), 693-696.
101. Park, S. H.; Prior, M. W.; LaBean, T. H.; Finkelstein, G. Optimized Fabrication and Electrical Analysis of Silver Nanowires Templated on DNA Molecules. Appl. Phys. Lett. 2006, 89(3), 033901.
102. Patolsky, F.; Weizmann, Y.; Lioubashevski, O.; Willner, I. Au-Nanoparticle Nanowires Based on DNA and Polylysine Templates. Angew. Chem. Int. Ed. 2002, 41(13), 2323-2327.
103. Pearson, A. C.; Pound, E.; Woolley, A. T.; Linford, M. R.; Harb, J. N.; Davis, R. C. Chemical Alignment of DNA Origami to Block Copolymer Patterned Arrays of 5 nm Gold Nanoparticles. Nano Lett. 2011, 11(5), 1981-1987.
104. Pearson, A. C.; Liu, J.; Pound, E.; Uprety, B.; Woolley, A. T.; Davis, R. C.; Harb, J. N. DNA Origami Metallized Site Specifically to Form Electrically Conductive Nanowires. J. Phys. Chem. B 2012, 116(35), 10551-10560.
105. Pearson, A. C.; Linford, M. R.; Harb, J. N.; Davis, R. C. Dual Patterning of a Poly(Acrylic Acid) Layer by Electron-Beam and Block Copolymer Lithographies. Langmuir 2013, 29(24), 7433-7438.
106. Pilo-Pais, M.; Goldberg, S.; Samano, E.; LaBean, T. H.; Finkelstein, G. Connecting the Nanodots: Programmable Nanofabrication of Fused Metal Shapes on DNA Templates. Nano Lett. 2011, 11(8), 3489-3492.
107. Pound, E.; Ashton, J. R.; Becerril, H. A.; Woolley, A. T. Polymerase Chain Reaction Based Scaffold Preparation for the Production of Thin, Branched DNA Origami Nanostructures of Arbitrary Sizes. Nano Lett. 2009, 9(12), 4302-4305.
108. Qian, L.; Wang, Y.; Zhang, Z.; Zhao, J.; Pan, D.; Zhang, Y.; Liu, Q.; Fan, C. H.; Hu, J.; He, L. Analogic China Map Constructed by DNA. Chin. Sci. Bull. 2006, 51(24), 2973-2976.
109. Rajendran, A.; Endo, M.; Katsuda, Y.; Hidaka, K.; Sugiyama, H. Programmed Two-Dimensional Self-Assembly of Multiple DNA Origami Jigsaw Pieces. ACS Nano 2011, 5(1), 665-671.
110. Rajendran, A.; Endo, M.; Sugiyama, H. Single-Molecule Analysis Using DNA Origami. Angew. Chem. Int. Ed. 2012, 51(4), 874-890.
111. Richter, J. Metallization of DNA. Physica E 2003, 16(2), 157-173.
112. Richter, J.; Seidel, R.; Kirsch, R.; Mertig, M.; Pompe, W.; Plaschke, J.; Schackert, H. K. Nanoscale Palladium Metallization of DNA. Adv. Mater. 2000, 12(7), 507-510.
113. Richter, J.; Mertig, M.; Pompe, W.; Monch, I.; Schackert, H. K. Construction of Highly Conductive Nanowires on a DNA Template. Appl. Phys. Lett. 2001, 78(4), 536-538.
114. Richter, J.; Mertig, M.; Pompe, W.; Vinzelberg, H. Low-Temperature Resistance of DNA-Templated Nanowires. Appl. Phys. A: Mater. Sci. Process. 2002, 74(6), 725-728.
115. Rinker, S.; Ke, Y. G.; Liu, Y.; Chhabra, R.; Yan, H. Self-Assembled DNA Nanostructures for Distance-Dependent Multivalent Ligand-Protein Binding. Nat. Nanotechnol. 2008, 3(7), 418-422.
116. Rothemund, P. W. K. Folding DNA to Create Nanoscale Shapes and Patterns. Nature 2006, 440(7082), 297-302.
117. Rothemund, P. W. K.; Ekani-Nkodo, A.; Papadakis, N.; Kumar, A.; Fygenson, D. K.; Winfree, E. Design and Characterization of Programmable DNA Nanotubes. J. Am. Chem. Soc. 2004, 126(50), 16344-16352.
118. Sacca, B.; Niemeyer, C. M. Functionalization of DNA Nanostructures with Proteins. Chem. Soc. Rev. 2011, 40(12), 5910-5921.
119. Sacca, B.; Niemeyer, C. M. DNA Origami: The Art of Folding DNA. Angew. Chem. Int. Ed. 2012, 51(1), 58-66.
120. Sacca, B.; Meyer, R.; Erkelenz, M.; Kiko, K.; Arndt, A.; Schroeder, H.; Rabe, K. S.; Niemeyer, C. M. Orthogonal Protein Decoration of DNA Origami. Angew. Chem. Int. Ed. 2010, 49(49), 9378-9383.
121. Sastry, M.; Kumar, A.; Datar, S.; Dharmadhikari, C. V.; Ganesh, K. N. DNA-Mediated Electrostatic Assembly of Gold Nanoparticles into Linear Arrays by a Simple Drop-Coating Procedure. Appl. Phys. Lett. 2001, 78(19), 2943-2945.
122. Schreiber, R.; Kempter, S.; Holler, S.; Schuller, V.; Schiffels, D.; Simmel, S. S.; Nickels, P. C.; Liedl, T. DNA Origami-Templated Growth of Arbitrarily Shaped Metal Nanoparticles. Small 2011, 7(13), 1795-1799.
123. Seeman, N. C. Nucleic-Acid Junctions and Lattices. J. Theor. Biol. 1982, 99(2), 237-247.
124. Seeman, N. C. De Novo Design of Sequences for Nucleic Acid Structural Engineering. J. Biomol. Struct. Dyn. 1990, 8(3), 573-581.
125. Seeman, N. C. Nucleic Acid Nanostructures and Topology. Angew. Chem. Int. Ed. 1998, 37(23), 3220-3238.
126. Seeman, N. C. DNA in a Material World. Nature 2003, 421(6921), 427-431.
127. Seeman, N. C. DNA Enables Nanoscale Control of the Structure of Matter. Q. Rev. Biophys. 2005, 38(4), 363-371.
128. Seeman, N. C. Nanomaterials Based on DNA. Annu. Rev. Biochem. 2010, 79, 65-87.
129. Seeman, N. C.; Belcher, A. M. Emulating Biology: Building Nanostructures from the Bottom Up. Proc. Natl. Acad. Sci. USA 2002, 99, 6451-6455.
130. Seeman, N. C.; Lukeman, P. S. Nucleic Acid Nanostructures: Bottom-up Control of Geometry on the Nanoscale. Rep. Prog. Phys. 2005, 68(1), 237-270.
131. Seidel, R.; Mertig, M.; Pompe, W. Scanning Force Microscopy of DNA Metallization. Surf. Interface Anal. 2002, 33(2), 151-154.
132. Seidel, R.; Ciacchi, L. C.; Weigel, M.; Pompe, W.; Mertig, M. Synthesis of Platinum Cluster Chains on DNA Templates: Conditions for a Template-Controlled Cluster Growth. J. Phys. Chem. B 2004, 108(30), 10801-10811.
133. Shapir, E.; Brancolini, G.; Molotsky, T.; Kotlyar, A. B.; Di Felice, R.; Porath, D. Energy Gap Reduction in DNA by Complexation with Metal Ions. Adv. Mater. 2011, 23(37), 4290-4294.
134. Sharma, J.; Ke, Y. G.; Lin, C. X.; Chhabra, R.; Wang, Q. B.; Nangreave, J.; Liu, Y.; Yan, H. DNA-Tile-Directed Self-Assembly of Quantum Dots into Two-Dimensional Nanopatterns. Angew. Chem. Int. Ed. 2008, 47(28), 5157-5159.
135. Sharma, J.; Chhabra, R.; Cheng, A.; Brownell, J.; Liu, Y.; Yan, H. Control of Self-Assembly of DNA Tubules through Integration of Gold Nanoparticles. Science 2009, 323(5910), 112-116.
136. Shen, X. B.; Song, C.; Wang, J. Y.; Shi, D. W.; Wang, Z. A.; Liu, N.; Ding, B. Q. Rolling up Gold Nanoparticle-Dressed DNA Origami into Three-Dimensional Plasmonic Chiral Nanostructures. J. Am. Chem. Soc. 2012, 134(1), 146-149.
137. Shih, W. M.; Lin, C. X. Knitting Complex Weaves with DNA Origami. Curr. Opin. Struct. Biol. 2010, 20(3), 276-282.
138. Shih, W. M.; Quispe, J. D.; Joyce, G. F. A 1.7-Kilobase Single-Stranded DNA That Folds into a Nanoscale Octahedron. Nature 2004, 427(6975), 618-621.
139. Sobczak, J. P. J.; Martin, T. G.; Gerling, T.; Dietz, H. Rapid Folding of DNA into Nanoscale Shapes at Constant Temperature. Science 2012, 338(6113), 1458-1461.
140. Stearns, L. A.; Chhabra, R.; Sharma, J.; Liu, Y.; Petuskey, W. T.; Yan, H.; Chaput, J. C. Template-Directed Nucleation and Growth of Inorganic Nanoparticles on DNA Scaffolds. Angew. Chem. Int. Ed. 2009, 48(45), 8494-8496.
141. Subramani, R.; Juul, S.; Rotaru, A.; Andersen, F. F.; Gothelf, K. V.; Mamdouh, W.; Besenbacher, F.; Dong, M. D.; Knudsen, B. R. A Novel Secondary DNA Binding Site in Human Topoisomerase I Unravelled by Using a 2D DNA Origami Platform. ACS Nano 2010, 4(10), 5969-5977.
142. Subramanian, H. K. K.; Chakraborty, B.; Sha, R.; Seeman, N. C. The Label-Free Unambiguous Detection and Symbolic Display of Single Nucleotide Polymorphisms on DNA Origami. Nano Lett. 2011, 11(2), 910-913.
143. Tan, S. J.; Campolongo, M. J.; Luo, D.; Cheng, W. L. Building Plasmonic Nanostructures with DNA. Nat. Nanotechnol. 2011, 6(5), 268-276.
144. Torring, T.; Voigt, N. V.; Nangreave, J.; Yan, H.; Gothelf, K. V. DNA Origami: A Quantum Leap for Self-Assembly of Complex Structures. Chem. Soc. Rev. 2011, 40(12), 5636-5646.
145. Uprety, B.; Gates, E. P.; Geng, Y.; Woolley, A. T.; Harb, J. N. Site-Specific Metallization of Multiple Metals on a Single DNA Origami Template. Langmuir 2014, 30, 1134-1141.
146. Voigt, N. V.; Torring, T.; Rotaru, A.; Jacobsen, M. F.; Ravnsbaek, J. B.; Subramani, R.; Mamdouh, W.; Kjems, J.; Mokhir, A.; Besenbacher, F.; Gothelf, K. V. Single-Molecule Chemical Reactions on DNA Origami. Nat. Nanotechnol. 2010, 5(3), 200-203.
147. Wickham, S. F. J.; Endo, M.; Katsuda, Y.; Hidaka, K.; Bath, J.; Sugiyama, H.; Turberfield, A. J. Direct Observation of Stepwise Movement of a Synthetic Molecular Transporter. Nat. Nanotechnol. 2011, 6(3), 166-169.
148. Williams, S.; Lund, K.; Lin, C.; Wonka, P.; Lindsay, S.; Yan, H. Tiamat: A Three-Dimensional Editing Tool for Complex DNA Structures. In 14th International Meeting on DNA Computing, DNA14, Prague, Czech Republic; Goel, A.; Simmel, F. C.; Sosík, P., Eds.; Springer: Prague, Czech Republic, 2008; pp 90-101.
149. Winfree, E.; Liu, F. R.; Wenzler, L. A.; Seeman, N. C. Design and Self-Assembly of Two-Dimensional DNA Crystals. Nature 1998, 394(6693), 539-544.
150. Yan, H.; LaBean, T. H.; Feng, L. P.; Reif, J. H. Directed Nucleation Assembly of DNA Tile Complexes for Barcode-Patterned Lattices. Proc. Natl. Acad. Sci. USA 2003a, 100(14), 8103-8108.
151. Yan, H.; Park, S. H.; Finkelstein, G.; Reif, J. H.; LaBean, T. H. DNA-Templated Self-Assembly of Protein Arrays and Highly Conductive Nanowires. Science 2003b, 301(5641), 1882-1884.
152. Yan, H.; Sharma, J.; Chhabra, R.; Andersen, C. S.; Gothelf, K. V.; Liu, Y. Toward Reliable Gold Nanoparticle Patterning on Self-Assembled DNA Nanoscaffold. J. Am. Chem. Soc. 2008, 130(25), 7820-7821.
153. Yang, Y.; Han, D. R.; Nangreave, J.; Liu, Y.; Yan, H. DNA Origami with Double-Stranded DNA as a Unified Scaffold. ACS Nano 2012, 6(9), 8209-8215.
154. Yu, H. B.; Ding, B. Q.; Wu, H.; Xu, W.; Zhao, Z. A.; Liu, Y.; Yan, H. Interconnecting Gold Islands with DNA Origami Nanotubes. Nano Lett. 2010, 10(12), 5065-5069.
155. Zadeh, J. N.; Steenberg, C. D.; Bois, J. S.; Wolfe, B. R.; Pierce, M. B.; Khan, A. R.; Dirks, R. M.; Pierce, N. A. Nupack: Analysis and Design of Nucleic Acid Systems. J. Comput. Chem. 2011, 32(1), 170-173.
156. Zhang, Y. W.; Seeman, N. C. Construction of a DNA-Truncated Octahedron. J. Am. Chem. Soc. 1994, 116(5), 1661-1669.
157. Zhao, Z.; Yan, H.; Liu, Y. A Route to Scale up DNA Origami Using DNA Tiles as Folding Staples. Angew. Chem. Int. Ed. 2010, 49(8), 1414-1417.
158. Zhao, Z.; Jacovetty, E. L.; Liu, Y.; Yan, H. Encapsulation of Gold Nanoparticles in a DNA Origami Cage. Angew. Chem. Int. Ed. 2011a, 50(9), 2041-2044.
159. Zhao, Z.; Liu, Y.; Yan, H. Organizing DNA Origami Tiles into Larger Structures Using Preformed Scaffold Frames. Nano Lett. 2011b, 11(7), 2997-3002.
160. Zheng, M.; Jagota, A.; Semke, E. D.; Diner, B. A.; Mclean, R. S.; Lustig, S. R.; Richardson, R. E.; Tassi, N. G. DNA-Assisted Dispersion and Separation of Carbon Nanotubes. Nat. Mater. 2003, 2(5), 338-342.
161. Zhu, J.; Wei, B.; Yuan, Y.; Mi, Y. UNIQUIMER 3D, a Software System for Structural DNA Nanotechnology Design, Analysis and Evaluation. Nucleic Acids Res. 2009, 37(7), 2164-2175.