-
1
-
-
14244272868
-
PHENIX: Building new software for automated crystallographic structure determination
-
doi: 10.1107/S0907444902016657
-
Adams PD, Grosse-Kunstleve RW, Hung LW, Ioerger TR, McCoy AJ, Moriarty NW, Read RJ, Sacchettini JC, Sauter NK, Terwilliger TC. 2002. PHENIX: building new software for automated crystallographic structure determination. Acta Crystallographica Section D Biological Crystallography 58:1948-1954. doi: 10.1107/S0907444902016657.
-
(2002)
Acta Crystallographica Section D Biological Crystallography
, vol.58
, pp. 1948-1954
-
-
Adams, P.D.1
Grosse-Kunstleve, R.W.2
Hung, L.W.3
Ioerger, T.R.4
McCoy, A.J.5
Moriarty, N.W.6
Read, R.J.7
Sacchettini, J.C.8
Sauter, N.K.9
Terwilliger, T.C.10
-
2
-
-
84859427527
-
MDA5 cooperatively forms dimers and ATP-sensitive filaments upon binding double-stranded RNA
-
doi: 10.1038/emboj.2012.19
-
Berke IC, Modis Y. 2012. MDA5 cooperatively forms dimers and ATP-sensitive filaments upon binding double-stranded RNA. The EMBO Journal 31:1714-1726. doi: 10.1038/emboj.2012.19.
-
(2012)
The EMBO Journal
, vol.31
, pp. 1714-1726
-
-
Berke, I.C.1
Modis, Y.2
-
3
-
-
75949098312
-
Mitochondrial dynamics regulate the RIG-I-like receptor antiviral pathway
-
doi: 10.1038/embor.2009.258
-
Castanier C, Garcin D, Vazquez A, Arnoult D. 2010. Mitochondrial dynamics regulate the RIG-I-like receptor antiviral pathway. EMBO Reports 11:133-138. doi: 10.1038/embor.2009.258.
-
(2010)
EMBO Reports
, vol.11
, pp. 133-138
-
-
Castanier, C.1
Garcin, D.2
Vazquez, A.3
Arnoult, D.4
-
4
-
-
80255141860
-
The RIG-I ATPase domain structure reveals insights into ATP-dependent antiviral signalling
-
doi: 10.1038/embor.2011.190
-
Civril F, Bennett M, Moldt M, Deimling T, Witte G, Schiesser S, Carell T, Hopfner KP. 2011. The RIG-I ATPase domain structure reveals insights into ATP-dependent antiviral signalling. EMBO Reports 12:1127-1134. doi: 10.1038/embor.2011.190.
-
(2011)
EMBO Reports
, vol.12
, pp. 1127-1134
-
-
Civril, F.1
Bennett, M.2
Moldt, M.3
Deimling, T.4
Witte, G.5
Schiesser, S.6
Carell, T.7
Hopfner, K.P.8
-
5
-
-
33845305513
-
The iterative helical real space reconstruction method: Surmounting the problems posed by real polymers
-
doi: 10.1016/j.jsb.2006.05.015
-
Egelman EH. 2007. The iterative helical real space reconstruction method: surmounting the problems posed by real polymers. Journal of Structural Biology 157:83-94. doi: 10.1016/j.jsb.2006.05.015.
-
(2007)
Journal of Structural Biology
, vol.157
, pp. 83-94
-
-
Egelman, E.H.1
-
10
-
-
68249146531
-
A nonself RNA pattern: Tri-p to panhandle
-
doi: 10.1016/j.immuni.2009.06.014
-
Fujita T. 2009. A nonself RNA pattern: tri-p to panhandle. Immunity 31:4-5. doi: 10.1016/j.immuni.2009.06.014.
-
(2009)
Immunity
, vol.31
, pp. 4-5
-
-
Fujita, T.1
-
11
-
-
79952100792
-
What the Myddosome structure tells us about the initiation of innate immunity
-
doi: 10.1016/j.it.2010.12.005
-
Gay NJ, Gangloff M, O'Neill LA. 2011. What the Myddosome structure tells us about the initiation of innate immunity. Trends in immunology 32:104-109. doi: 10.1016/j.it.2010.12.005.
-
(2011)
Trends in immunology
, vol.32
, pp. 104-109
-
-
Gay, N.J.1
Gangloff, M.2
O'Neill, L.A.3
-
12
-
-
42149143016
-
Three-dimensional resolution doubling in wide-field fluorescence microscopy by structured illumination
-
doi: 10.1529/biophysj.107.120345
-
Gustafsson MG, Shao L, Carlton PM, Wang CJ, Golubovskaya IN, Cande WZ, Agard DA, Sedat JW. 2008. Three-dimensional resolution doubling in wide-field fluorescence microscopy by structured illumination. Biophysical Journal 94:4957-4970. doi: 10.1529/biophysj.107.120345.
-
(2008)
Biophysical Journal
, vol.94
, pp. 4957-4970
-
-
Gustafsson, M.G.1
Shao, L.2
Carlton, P.M.3
Wang, C.J.4
Golubovskaya, I.N.5
Cande, W.Z.6
Agard, D.A.7
Sedat, J.W.8
-
13
-
-
40049084760
-
Regulation of enzyme localization by polymerization: Polymer formation by the SAM domain of diacylglycerol kinase delta1
-
doi: 10.1016/j.str.2007.12.017
-
Harada BT, Knight MJ, Imai S, Qiao F, Ramachander R, Sawaya MR, Gingery M, Sakane F, Bowie JU. 2008. Regulation of enzyme localization by polymerization: polymer formation by the SAM domain of diacylglycerol kinase delta1. Structure 16:380-387. doi: 10.1016/j.str.2007.12.017.
-
(2008)
Structure
, vol.16
, pp. 380-387
-
-
Harada, B.T.1
Knight, M.J.2
Imai, S.3
Qiao, F.4
Ramachander, R.5
Sawaya, M.R.6
Gingery, M.7
Sakane, F.8
Bowie, J.U.9
-
14
-
-
70349453563
-
Crystal structure of the plexin A3 intracellular region reveals an autoinhibited conformation through active site sequestration
-
doi: 10.1073/pnas.0906923106
-
He H, Yang T, Terman JR, Zhang X. 2009. Crystal structure of the plexin A3 intracellular region reveals an autoinhibited conformation through active site sequestration. Proceedings of the National Academy of Sciences of the United States of America 106:15610-15615. doi: 10.1073/pnas.0906923106.
-
(2009)
Proceedings of the National Academy of Sciences of the United States of America
, vol.106
, pp. 15610-15615
-
-
He, H.1
Yang, T.2
Terman, J.R.3
Zhang, X.4
-
15
-
-
79951600430
-
Two-layer membranes of calcium phosphate/collagen/PLGA nanofibres: In vitro biomineralisation and osteogenic differentiation of human mesenchymal stem cells
-
doi: 10.1039/c0nr00615g
-
Hild N, Schneider OD, Mohn D, Luechinger NA, Koehler FM, Hofmann S, Vetsch JR, Thimm BW, Muller R, Stark WJ. 2011. Two-layer membranes of calcium phosphate/collagen/PLGA nanofibres: in vitro biomineralisation and osteogenic differentiation of human mesenchymal stem cells. Nanoscale 3:401-409. doi: 10.1039/c0nr00615g.
-
(2011)
Nanoscale
, vol.3
, pp. 401-409
-
-
Hild, N.1
Schneider, O.D.2
Mohn, D.3
Luechinger, N.A.4
Koehler, F.M.5
Hofmann, S.6
Vetsch, J.R.7
Thimm, B.W.8
Muller, R.9
Stark, W.J.10
-
16
-
-
33750976374
-
5'-Triphosphate RNA is the ligand for RIG-I
-
doi: 10.1126/science.1132505
-
Hornung V, Ellegast J, Kim S, Brzozka K, Jung A, Kato H, Poeck H, Akira S, Conzelmann KK, Schlee M, Endres S, Hartmann G. 2006. 5'-Triphosphate RNA is the ligand for RIG-I. Science 314:994-997. doi: 10.1126/science.1132505.
-
(2006)
Science
, vol.314
, pp. 994-997
-
-
Hornung, V.1
Ellegast, J.2
Kim, S.3
Brzozka, K.4
Jung, A.5
Kato, H.6
Poeck, H.7
Akira, S.8
Conzelmann, K.K.9
Schlee, M.10
Endres, S.11
Hartmann, G.12
-
17
-
-
79961133270
-
MAVS forms functional prion-like aggregates to activate and propagate antiviral innate immune response
-
doi: 10.1016/j.cell.2011.06.041
-
Hou F, Sun L, Zheng H, Skaug B, Jiang QX, Chen ZJ. 2011. MAVS forms functional prion-like aggregates to activate and propagate antiviral innate immune response. Cell 146:448-461. doi: 10.1016/j.cell.2011.06.041.
-
(2011)
Cell
, vol.146
, pp. 448-461
-
-
Hou, F.1
Sun, L.2
Zheng, H.3
Skaug, B.4
Jiang, Q.X.5
Chen, Z.J.6
-
18
-
-
74549167783
-
Regulation of adaptive immunity by the innate immune system
-
doi: 10.1126/science.1183021
-
Iwasaki A, Medzhitov R. 2010. Regulation of adaptive immunity by the innate immune system. Science 327:291-295. doi: 10.1126/science.1183021.
-
(2010)
Science
, vol.327
, pp. 291-295
-
-
Iwasaki, A.1
Medzhitov, R.2
-
19
-
-
80054751625
-
Electron microscopic imaging of integrin
-
doi: 10.1007/978-1-61779-166-6_9
-
Iwasaki K. 2012. Electron microscopic imaging of integrin. Methods in Molecular Biology 757:111-128. doi: 10.1007/978-1-61779-166-6_9.
-
(2012)
Methods in Molecular Biology
, vol.757
, pp. 111-128
-
-
Iwasaki, K.1
-
20
-
-
81555204380
-
Structural basis of RNA recognition and activation by innate immune receptor RIG-I
-
doi: 10.1038/nature10537
-
Jiang F, Ramanathan A, Miller MT, Tang GQ, Gale M, Patel SS, Marcotrigiano J. 2011. Structural basis of RNA recognition and activation by innate immune receptor RIG-I. Nature 479:423-427. doi: 10.1038/nature10537.
-
(2011)
Nature
, vol.479
, pp. 423-427
-
-
Jiang, F.1
Ramanathan, A.2
Miller, M.T.3
Tang, G.Q.4
Gale, M.5
Patel, S.S.6
Marcotrigiano, J.7
-
21
-
-
84862994793
-
Ubiquitin-induced oligomerization of the RNA sensors RIG-I and MDA5 activates antiviral innate immune response
-
doi: 10.1016/j.immuni.2012.03.022
-
Jiang X, Kinch LN, Brautigam CA, Chen X, Du F, Grishin NV, Chen ZJ. 2012. Ubiquitin-induced oligomerization of the RNA sensors RIG-I and MDA5 activates antiviral innate immune response. Immunity 36:959-973. doi: 10.1016/j.immuni.2012.03.022.
-
(2012)
Immunity
, vol.36
, pp. 959-973
-
-
Jiang, X.1
Kinch, L.N.2
Brautigam, C.A.3
Chen, X.4
Du, F.5
Grishin, N.V.6
Chen, Z.J.7
-
22
-
-
46949097299
-
Length-dependent recognition of double-stranded ribonucleic acids by retinoic acid-inducible gene-I and melanoma differentiation-associated gene 5
-
doi: 10.1084/jem.20080091
-
Kato H, Takeuchi O, Mikamo-Satoh E, Hirai R, Kawai T, Matsushita K, Hiiragi A, Dermody TS, Fujita T, Akira S. 2008. Length-dependent recognition of double-stranded ribonucleic acids by retinoic acid-inducible gene-I and melanoma differentiation-associated gene 5. The Journal of Experimental Medicine 205:1601-1610. doi: 10.1084/jem.20080091.
-
(2008)
The Journal of Experimental Medicine
, vol.205
, pp. 1601-1610
-
-
Kato, H.1
Takeuchi, O.2
Mikamo-Satoh, E.3
Hirai, R.4
Kawai, T.5
Matsushita, K.6
Hiiragi, A.7
Dermody, T.S.8
Fujita, T.9
Akira, S.10
-
24
-
-
27144440523
-
IPS-1, an adaptor triggering RIG-I-and Mda5-mediated type I interferon induction
-
doi: 10.1038/ni1243
-
Kawai T, Takahashi K, Sato S, Coban C, Kumar H, Kato H, Ishii KJ, Takeuchi O, Akira S. 2005. IPS-1, an adaptor triggering RIG-I-and Mda5-mediated type I interferon induction. Nature Immunology 6:981-988. doi: 10.1038/ni1243.
-
(2005)
Nature Immunology
, vol.6
, pp. 981-988
-
-
Kawai, T.1
Takahashi, K.2
Sato, S.3
Coban, C.4
Kumar, H.5
Kato, H.6
Ishii, K.J.7
Takeuchi, O.8
Akira, S.9
-
26
-
-
84883488816
-
Defining the functional determinants for RNA surveillance by RIG-I
-
doi: 10.1038/embor.2013.108
-
Kohlway A, Luo D, Rawling DC, Ding SC, Pyle AM. 2013. Defining the functional determinants for RNA surveillance by RIG-I. EMBO Reports 14:772-779. doi: 10.1038/embor.2013.108.
-
(2013)
EMBO Reports
, vol.14
, pp. 772-779
-
-
Kohlway, A.1
Luo, D.2
Rawling, D.C.3
Ding, S.C.4
Pyle, A.M.5
-
27
-
-
79551716551
-
Mitochondrial membrane potential is required for MAVS-mediated antiviral signaling
-
doi: 10.1126/scisignal.2001147
-
Koshiba T, Yasukawa K, Yanagi Y, Kawabata S. 2011. Mitochondrial membrane potential is required for MAVS-mediated antiviral signaling. Science signaling 4:ra7. doi: 10.1126/scisignal.2001147.
-
(2011)
Science signaling
, vol.4
-
-
Koshiba, T.1
Yasukawa, K.2
Yanagi, Y.3
Kawabata, S.4
-
28
-
-
80054703126
-
Structural basis for the activation of innate immune pattern-recognition receptor RIG-i by viral RNA
-
doi: 10.1016/j.cell.2011.09.039
-
Kowalinski E, Lunardi T, McCarthy AA, Louber J, Brunel J, Grigorov B, Gerlier D, Cusack S. 2011. Structural basis for the activation of innate immune pattern-recognition receptor RIG-i by viral RNA. Cell 147:423-435. doi: 10.1016/j.cell.2011.09.039.
-
(2011)
Cell
, vol.147
, pp. 423-435
-
-
Kowalinski, E.1
Lunardi, T.2
McCarthy, A.A.3
Louber, J.4
Brunel, J.5
Grigorov, B.6
Gerlier, D.7
Cusack, S.8
-
29
-
-
80051775478
-
RNA helicase retinoic acid-inducible gene I as a sensor of Hantaan virus replication
-
doi: 10.1099/vir.0.032367-0
-
Lee MH, Lalwani P, Raftery MJ, Matthaei M, Lutteke N, Kirsanovs S, Binder M, Ulrich RG, Giese T, Wolff T, Krüger DH, Schönrich G. 2011. RNA helicase retinoic acid-inducible gene I as a sensor of Hantaan virus replication. The Journal of General Virology 92:2191-2200. doi: 10.1099/vir.0.032367-0.
-
(2011)
The Journal of General Virology
, vol.92
, pp. 2191-2200
-
-
Lee, M.H.1
Lalwani, P.2
Raftery, M.J.3
Matthaei, M.4
Lutteke, N.5
Kirsanovs, S.6
Binder, M.7
Ulrich, R.G.8
Giese, T.9
Wolff, T.10
Krüger, D.H.11
Schönrich, G.12
-
30
-
-
77953714711
-
Helical assembly in the MyD88-IRAK4-IRAK2 complex in TLR/IL-1R signalling
-
doi: 10.1038/nature09121
-
Lin SC, Lo YC, Wu H. 2010. Helical assembly in the MyD88-IRAK4-IRAK2 complex in TLR/IL-1R signalling. Nature 465:885-890. doi: 10.1038/nature09121.
-
(2010)
Nature
, vol.465
, pp. 885-890
-
-
Lin, S.C.1
Lo, Y.C.2
Wu, H.3
-
31
-
-
84882705934
-
MAVS recruits multiple ubiquitin E3 ligases to activate antiviral signaling cascades
-
doi: 10.7554/eLife.00785
-
Liu S, Chen J, Cai X, Wu J, Chen X, Wu YT, Sun L, Chen ZJ. 2013. MAVS recruits multiple ubiquitin E3 ligases to activate antiviral signaling cascades. eLife 2:e00785. doi: 10.7554/eLife.00785.
-
(2013)
eLife
, vol.2
-
-
Liu, S.1
Chen, J.2
Cai, X.3
Wu, J.4
Chen, X.5
Wu, Y.T.6
Sun, L.7
Chen, Z.J.8
-
32
-
-
37349052379
-
Distinct RIG-I and MDA5 signaling by RNA viruses in innate immunity
-
doi: 10.1128/JVI.01080-07
-
Loo YM, Fornek J, Crochet N, Bajwa G, Perwitasari O, Martinez-Sobrido L, Akira S, Gill MA, Garcia-Sastre A, Katze MG, Gale M Jnr. 2008. Distinct RIG-I and MDA5 signaling by RNA viruses in innate immunity. Journal of Virology 82:335-345. doi: 10.1128/JVI.01080-07.
-
(2008)
Journal of Virology
, vol.82
, pp. 335-345
-
-
Loo, Y.M.1
Fornek, J.2
Crochet, N.3
Bajwa, G.4
Perwitasari, O.5
Martinez-Sobrido, L.6
Akira, S.7
Gill, M.A.8
Garcia-Sastre, A.9
Katze, M.G.10
Gale Jr., M.11
-
33
-
-
0033377664
-
EMAN: Semiautomated software for high-resolution single-particle reconstructions
-
doi: 10.1006/jsbi.1999.4174
-
Ludtke SJ, Baldwin PR, Chiu W. 1999. EMAN: semiautomated software for high-resolution single-particle reconstructions. Journal of Structural Biology 128:82-97. doi: 10.1006/jsbi.1999.4174.
-
(1999)
Journal of Structural Biology
, vol.128
, pp. 82-97
-
-
Ludtke, S.J.1
Baldwin, P.R.2
Chiu, W.3
-
34
-
-
80054685883
-
Structural insights into RNA recognition by RIG-I
-
doi: 10.1016/j.cell.2011.09.023
-
Luo D, Ding SC, Vela A, Kohlway A, Lindenbach BD, Pyle AM. 2011. Structural insights into RNA recognition by RIG-I. Cell 147:409-422. doi: 10.1016/j.cell.2011.09.023.
-
(2011)
Cell
, vol.147
, pp. 409-422
-
-
Luo, D.1
Ding, S.C.2
Vela, A.3
Kohlway, A.4
Lindenbach, B.D.5
Pyle, A.M.6
-
35
-
-
84875143223
-
Duplex RNA activated ATPases (DRAs): Platforms for RNA sensing, signaling and processing
-
doi: 10.4161/rna.22706
-
Luo D, Kohlway A, Pyle AM. 2013. Duplex RNA activated ATPases (DRAs): platforms for RNA sensing, signaling and processing. RNA Biology 10:111-120. doi: 10.4161/rna.22706.
-
(2013)
RNA Biology
, vol.10
, pp. 111-120
-
-
Luo, D.1
Kohlway, A.2
Pyle, A.M.3
-
36
-
-
84868553355
-
Visualizing the determinants of viral RNA recognition by innate immune sensor RIG-I
-
doi: 10.1016/j.str.2012.08.029
-
Luo D, Kohlway A, Vela A, Pyle AM. 2012. Visualizing the determinants of viral RNA recognition by innate immune sensor RIG-I. Structure 20:1983-1988. doi: 10.1016/j.str.2012.08.029.
-
(2012)
Structure
, vol.20
, pp. 1983-1988
-
-
Luo, D.1
Kohlway, A.2
Vela, A.3
Pyle, A.M.4
-
37
-
-
79953166075
-
Short double-stranded RNAs with an overhanging 5' ppp-nucleotide, as found in arenavirus genomes, act as RIG-I decoys
-
doi: 10.1074/jbc.M110.186262
-
Marq JB, Hausmann S, Veillard N, Kolakofsky D, Garcin D. 2011. Short double-stranded RNAs with an overhanging 5' ppp-nucleotide, as found in arenavirus genomes, act as RIG-I decoys. The Journal of Biological Chemistry 286:6108-6116. doi: 10.1074/jbc.M110.186262.
-
(2011)
The Journal of Biological Chemistry
, vol.286
, pp. 6108-6116
-
-
Marq, J.B.1
Hausmann, S.2
Veillard, N.3
Kolakofsky, D.4
Garcin, D.5
-
38
-
-
34447508216
-
Phaser crystallographic software
-
doi: 10.1107/S0021889807021206
-
McCoy AJ, Grosse-Kunstleve RW, Adams PD, Winn MD, Storoni LC, Read RJ. 2007. Phaser crystallographic software. Journal of Applied Crystallography 40:658-674. doi: 10.1107/S0021889807021206.
-
(2007)
Journal of Applied Crystallography
, vol.40
, pp. 658-674
-
-
McCoy, A.J.1
Grosse-Kunstleve, R.W.2
Adams, P.D.3
Winn, M.D.4
Storoni, L.C.5
Read, R.J.6
-
39
-
-
27144440476
-
Cardif is an adaptor protein in the RIG-I antiviral pathway and is targeted by hepatitis C virus
-
doi: 10.1038/nature04193
-
Meylan E, Curran J, Hofmann K, Moradpour D, Binder M, Bartenschlager R, Tschopp J. 2005. Cardif is an adaptor protein in the RIG-I antiviral pathway and is targeted by hepatitis C virus. Nature 437:1167-1172. doi: 10.1038/nature04193.
-
(2005)
Nature
, vol.437
, pp. 1167-1172
-
-
Meylan, E.1
Curran, J.2
Hofmann, K.3
Moradpour, D.4
Binder, M.5
Bartenschlager, R.6
Tschopp, J.7
-
40
-
-
0034710897
-
A census of glutamine/asparagine-rich regions: Implications for their conserved function and the prediction of novel prions
-
doi: 10.1073/pnas.97.22.11910
-
Michelitsch MD, Weissman JS. 2000. A census of glutamine/asparagine-rich regions: implications for their conserved function and the prediction of novel prions. Proceedings of the National Academy of Sciences of the United States of America 97:11910-11915. doi: 10.1073/pnas.97.22.11910.
-
(2000)
Proceedings of the National Academy of Sciences of the United States of America
, vol.97
, pp. 11910-11915
-
-
Michelitsch, M.D.1
Weissman, J.S.2
-
41
-
-
84892373963
-
Antibacterial membrane attack by a pore-forming intestinal C-type lectin
-
doi: 10.1038/nature12729
-
Mukherjee S, Zheng H, Derebe MG, Callenberg KM, Partch CL, Rollins D, Propheter DC, Rizo J, Grabe M, Jiang QX, Hooper LV. 2014. Antibacterial membrane attack by a pore-forming intestinal C-type lectin. Nature 505:103-107. doi: 10.1038/nature12729.
-
(2014)
Nature
, vol.505
, pp. 103-107
-
-
Mukherjee, S.1
Zheng, H.2
Derebe, M.G.3
Callenberg, K.M.4
Partch, C.L.5
Rollins, D.6
Propheter, D.C.7
Rizo, J.8
Grabe, M.9
Jiang, Q.X.10
Hooper, L.V.11
-
42
-
-
46949102571
-
Structure and function of LGP2, a DEX(D/H) helicase that regulates the innate immunity response
-
doi: 10.1074/jbc.M800542200
-
Murali A, Li X, Ranjith-Kumar CT, Bhardwaj K, Holzenburg A, Li P, Kao CC. 2008. Structure and function of LGP2, a DEX(D/H) helicase that regulates the innate immunity response. The Journal of Biological Chemistry 283:15825-15833. doi: 10.1074/jbc.M800542200.
-
(2008)
The Journal of Biological Chemistry
, vol.283
, pp. 15825-15833
-
-
Murali, A.1
Li, X.2
Ranjith-Kumar, C.T.3
Bhardwaj, K.4
Holzenburg, A.5
Li, P.6
Kao, C.C.7
-
43
-
-
84877757564
-
Molecular basis of NF-kappaB signaling
-
doi: 10.1146/annurev-biophys-083012-130338
-
Napetschnig J, Wu H. 2013. Molecular basis of NF-kappaB signaling. Annual Review of Biophysics 42:443-468. doi: 10.1146/annurev-biophys-083012-130338.
-
(2013)
Annual Review of Biophysics
, vol.42
, pp. 443-468
-
-
Napetschnig, J.1
Wu, H.2
-
44
-
-
20444440728
-
Structure of the cross-beta spine of amyloid-like fibrils
-
doi: 10.1038/nature03680
-
Nelson R, Sawaya MR, Balbirnie M, Madsen AO, Riekel C, Grothe R, Eisenberg D. 2005. Structure of the cross-beta spine of amyloid-like fibrils. Nature 435:773-778. doi: 10.1038/nature03680.
-
(2005)
Nature
, vol.435
, pp. 773-778
-
-
Nelson, R.1
Sawaya, M.R.2
Balbirnie, M.3
Madsen, A.O.4
Riekel, C.5
Grothe, R.6
Eisenberg, D.7
-
45
-
-
0034641743
-
Molecular basis for CD40 signaling mediated by TRAF3
-
doi: 10.1073/pnas.97.19.10395
-
Ni CZ, Welsh K, Leo E, Chiou CK, Wu H, Reed JC, Ely KR. 2000. Molecular basis for CD40 signaling mediated by TRAF3. Proceedings of the National Academy of Sciences of the United States of America 97:10395-10399. doi: 10.1073/pnas.97.19.10395.
-
(2000)
Proceedings of the National Academy of Sciences of the United States of America
, vol.97
, pp. 10395-10399
-
-
Ni, C.Z.1
Welsh, K.2
Leo, E.3
Chiou, C.K.4
Wu, H.5
Reed, J.C.6
Ely, K.R.7
-
46
-
-
77957666242
-
Virus-infection or 5'ppp-RNA activates antiviral signal through redistribution of IPS-1 mediated by MFN1
-
doi: 10.1371/journal.ppat.1001012
-
Onoguchi K, Onomoto K, Takamatsu S, Jogi M, Takemura A, Morimoto S, Julkunen I, Namiki H, Yoneyama M, Fujita T. 2010. Virus-infection or 5'ppp-RNA activates antiviral signal through redistribution of IPS-1 mediated by MFN1. PLoS Pathogens 6:e1001012. doi: 10.1371/journal.ppat.1001012.
-
(2010)
PLoS Pathogens
, vol.6
-
-
Onoguchi, K.1
Onomoto, K.2
Takamatsu, S.3
Jogi, M.4
Takemura, A.5
Morimoto, S.6
Julkunen, I.7
Namiki, H.8
Yoneyama, M.9
Fujita, T.10
-
47
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
doi: 10.1016/S0076-6879(97)76066-X
-
Otwinowski Z, Minor W. 1997. Processing of X-ray diffraction data collected in oscillation mode. Methods in Enzymology 276:307-326. doi: 10.1016/S0076-6879(97)76066-X.
-
(1997)
Methods in Enzymology
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
48
-
-
0001033803
-
Structural basis for self-association and receptor recognition of human TRAF2
-
doi: 10.1038/19110
-
Park YC, Burkitt V, Villa AR, Tong L, Wu H. 1999. Structural basis for self-association and receptor recognition of human TRAF2. Nature 398:533-538. doi: 10.1038/19110.
-
(1999)
Nature
, vol.398
, pp. 533-538
-
-
Park, Y.C.1
Burkitt, V.2
Villa, A.R.3
Tong, L.4
Wu, H.5
-
49
-
-
84883487585
-
ATPase-driven oligomerization of RIG-I on RNA allows optimal activation of type-I interferon
-
doi: 10.1038/embor.2013.102
-
Patel JR, Jain A, Chou YY, Baum A, Ha T, Garcia-Sastre A. 2013. ATPase-driven oligomerization of RIG-I on RNA allows optimal activation of type-I interferon. EMBO Reports 14:780-787. doi: 10.1038/embor.2013.102.
-
(2013)
EMBO Reports
, vol.14
, pp. 780-787
-
-
Patel, J.R.1
Jain, A.2
Chou, Y.Y.3
Baum, A.4
Ha, T.5
Garcia-Sastre, A.6
-
50
-
-
84862909216
-
Cooperative assembly and dynamic disassembly of MDA5 filaments for viral dsRNA recognition
-
doi: 10.1073/pnas.1113651108
-
Peisley A, Lin C, Wu B, Orme-Johnson M, Liu M, Walz T, Hur S. 2011. Cooperative assembly and dynamic disassembly of MDA5 filaments for viral dsRNA recognition. Proceedings of the National Academy of Sciences of the United States of America 108:21010-21015. doi: 10.1073/pnas.1113651108.
-
(2011)
Proceedings of the National Academy of Sciences of the United States of America
, vol.108
, pp. 21010-21015
-
-
Peisley, A.1
Lin, C.2
Wu, B.3
Orme-Johnson, M.4
Liu, M.5
Walz, T.6
Hur, S.7
-
51
-
-
84883759334
-
RIG-I forms signaling-competent filaments in an ATP-dependent, ubiquitin-independent manner
-
doi: 10.1016/j.molcel.2013.07.024
-
Peisley A, Wu B, Yao H, Walz T, Hur S. 2013. RIG-I forms signaling-competent filaments in an ATP-dependent, ubiquitin-independent manner. Molecular Cell 51:573-583. doi: 10.1016/j.molcel.2013.07.024.
-
(2013)
Molecular Cell
, vol.51
, pp. 573-583
-
-
Peisley, A.1
Wu, B.2
Yao, H.3
Walz, T.4
Hur, S.5
-
52
-
-
4444221565
-
UCSF Chimera-a visualization system for exploratory research and analysis
-
doi: 10.1002/jcc.20084
-
Pettersen EF, Goddard TD, Huang CC, Couch GS, Greenblatt DM, Meng EC, Ferrin TE. 2004. UCSF Chimera-a visualization system for exploratory research and analysis. Journal of Computational Chemistry 25:1605-1612. doi: 10.1002/jcc.20084.
-
(2004)
Journal of Computational Chemistry
, vol.25
, pp. 1605-1612
-
-
Pettersen, E.F.1
Goddard, T.D.2
Huang, C.C.3
Couch, G.S.4
Greenblatt, D.M.5
Meng, E.C.6
Ferrin, T.E.7
-
53
-
-
41849132440
-
Crystal structure of human IPS-1/MAVS/VISA/Cardif caspase activation recruitment domain
-
doi: 10.1186/1472-6807-8-11
-
Potter JA, Randall RE, Taylor GL. 2008. Crystal structure of human IPS-1/MAVS/VISA/Cardif caspase activation recruitment domain. BMC Structural Biology 8:11. doi: 10.1186/1472-6807-8-11.
-
(2008)
BMC Structural Biology
, vol.8
, pp. 11
-
-
Potter, J.A.1
Randall, R.E.2
Taylor, G.L.3
-
54
-
-
59449102889
-
Agonist and antagonist recognition by RIG-I, a cytoplasmic innate immunity receptor
-
doi: 10.1074/jbc.M806219200
-
Ranjith-Kumar CT, Murali A, Dong W, Srisathiyanarayanan D, Vaughan R, Ortiz-Alacantara J, Bhardwaj K, Li X, Li P, Kao CC. 2009. Agonist and antagonist recognition by RIG-I, a cytoplasmic innate immunity receptor. The Journal of Biological Chemistry 284:1155-1165. doi: 10.1074/jbc.M806219200.
-
(2009)
The Journal of Biological Chemistry
, vol.284
, pp. 1155-1165
-
-
Ranjith-Kumar, C.T.1
Murali, A.2
Dong, W.3
Srisathiyanarayanan, D.4
Vaughan, R.5
Ortiz-Alacantara, J.6
Bhardwaj, K.7
Li, X.8
Li, P.9
Kao, C.C.10
-
55
-
-
78449269327
-
Plant and animal sensors of conserved microbial signatures
-
doi: 10.1126/science.1189468
-
Ronald PC, Beutler B. 2010. Plant and animal sensors of conserved microbial signatures. Science 330:1061-1064. doi: 10.1126/science.1189468.
-
(2010)
Science
, vol.330
, pp. 1061-1064
-
-
Ronald, P.C.1
Beutler, B.2
-
56
-
-
68049089651
-
Recognition of 5' triphosphate by RIG-I helicase requires short blunt double-stranded RNA as contained in panhandle of negative-strand virus
-
doi: 10.1016/j.immuni.2009.05.008
-
Schlee M, Roth A, Hornung V, Hagmann CA, Wimmenauer V, Barchet W, Coch C, Janke M, Mihailovic A, Wardle G, Juranek S, Kato H, Kawai T, Poeck H, Fitzgerald KA, Takeuchi O, Akira S, Tuschl T, Latz E, Ludwig J, Hartmann G. 2009. Recognition of 5' triphosphate by RIG-I helicase requires short blunt double-stranded RNA as contained in panhandle of negative-strand virus. Immunity 31:25-34. doi: 10.1016/j.immuni.2009.05.008.
-
(2009)
Immunity
, vol.31
, pp. 25-34
-
-
Schlee, M.1
Roth, A.2
Hornung, V.3
Hagmann, C.A.4
Wimmenauer, V.5
Barchet, W.6
Coch, C.7
Janke, M.8
Mihailovic, A.9
Wardle, G.10
Juranek, S.11
Kato, H.12
Kawai, T.13
Poeck, H.14
Fitzgerald, K.A.15
Takeuchi, O.16
Akira, S.17
Tuschl, T.18
Latz, E.19
Ludwig, J.20
Hartmann, G.21
more..
-
57
-
-
24144461689
-
Identification and characterization of MAVS, a mitochondrial antiviral signaling protein that activates NF-kappaB and IRF 3
-
doi: 10.1016/j.cell.2005.08.012
-
Seth RB, Sun L, Ea CK, Chen ZJ. 2005. Identification and characterization of MAVS, a mitochondrial antiviral signaling protein that activates NF-kappaB and IRF 3. Cell 122:669-682. doi: 10.1016/j.cell.2005.08.012.
-
(2005)
Cell
, vol.122
, pp. 669-682
-
-
Seth, R.B.1
Sun, L.2
Ea, C.K.3
Chen, Z.J.4
-
58
-
-
77950343791
-
Pattern recognition receptors and inflammation
-
doi: 10.1016/j.cell.2010.01.022
-
Takeuchi O, Akira S. 2010. Pattern recognition receptors and inflammation. Cell 140:805-820. doi: 10.1016/j.cell.2010.01.022.
-
(2010)
Cell
, vol.140
, pp. 805-820
-
-
Takeuchi, O.1
Akira, S.2
-
59
-
-
77955358961
-
Using Situs for the integration of multi-resolution structures
-
doi: 10.1007/s12551-009-0026-3
-
Wriggers W. 2010. Using Situs for the integration of multi-resolution structures. Biophysical Reviews 2:21-27. doi: 10.1007/s12551-009-0026-3.
-
(2010)
Biophysical Reviews
, vol.2
, pp. 21-27
-
-
Wriggers, W.1
-
60
-
-
84872604349
-
Structural basis for dsRNA recognition, filament formation, and antiviral signal activation by MDA5
-
doi: 10.1016/j.cell.2012.11.048
-
Wu B, Peisley A, Richards C, Yao H, Zeng X, Lin C, Chu F, Walz T, Hur S. 2013. Structural basis for dsRNA recognition, filament formation, and antiviral signal activation by MDA5. Cell 152:276-289. doi: 10.1016/j.cell.2012.11.048.
-
(2013)
Cell
, vol.152
, pp. 276-289
-
-
Wu, B.1
Peisley, A.2
Richards, C.3
Yao, H.4
Zeng, X.5
Lin, C.6
Chu, F.7
Walz, T.8
Hur, S.9
-
61
-
-
24944538819
-
VISA is an adapter protein required for virus-triggered IFN-beta signaling
-
doi: 10.1016/j.molcel.2005.08.014
-
Xu LG, Wang YY, Han KJ, Li LY, Zhai Z, Shu HB. 2005. VISA is an adapter protein required for virus-triggered IFN-beta signaling. Molecular Cell 19:727-740. doi: 10.1016/j.molcel.2005.08.014.
-
(2005)
Molecular Cell
, vol.19
, pp. 727-740
-
-
Xu, L.G.1
Wang, Y.Y.2
Han, K.J.3
Li, L.Y.4
Zhai, Z.5
Shu, H.B.6
-
62
-
-
70350468688
-
Mitofusin 2 inhibits mitochondrial antiviral signaling
-
doi: 10.1126/scisignal.2000287
-
Yasukawa K, Oshiumi H, Takeda M, Ishihara N, Yanagi Y, Seya T, Kawabata S, Koshiba T. 2009. Mitofusin 2 inhibits mitochondrial antiviral signaling. Science signaling 2:ra47. doi: 10.1126/scisignal.2000287.
-
(2009)
Science signaling
, vol.2
-
-
Yasukawa, K.1
Oshiumi, H.2
Takeda, M.3
Ishihara, N.4
Yanagi, Y.5
Seya, T.6
Kawabata, S.7
Koshiba, T.8
-
63
-
-
58049217490
-
RNA recognition and signal transduction by RIG-I-like receptors
-
doi: 10.1111/j.1600-065X.2008.00727.x
-
Yoneyama M, Fujita T. 2009. RNA recognition and signal transduction by RIG-I-like receptors. Immunological Review 227:54-65. doi: 10.1111/j.1600-065X.2008.00727.x.
-
(2009)
Immunological Review
, vol.227
, pp. 54-65
-
-
Yoneyama, M.1
Fujita, T.2
-
64
-
-
3242813113
-
The RNA helicase RIG-I has an essential function in double-stranded RNA-induced innate antiviral responses
-
doi: 10.1038/ni1087
-
Yoneyama M, Kikuchi M, Natsukawa T, Shinobu N, Imaizumi T, Miyagishi M, Taira K, Akira S, Fujita T. 2004. The RNA helicase RIG-I has an essential function in double-stranded RNA-induced innate antiviral responses. Nature Immunology 5:730-737. doi: 10.1038/ni1087.
-
(2004)
Nature Immunology
, vol.5
, pp. 730-737
-
-
Yoneyama, M.1
Kikuchi, M.2
Natsukawa, T.3
Shinobu, N.4
Imaizumi, T.5
Miyagishi, M.6
Taira, K.7
Akira, S.8
Fujita, T.9
-
65
-
-
84871810150
-
Unclosed HIV-1 capsids suggest a curled sheet model of assembly
-
doi: 10.1016/j.jmb.2012.10.006
-
Yu Z, Dobro MJ, Woodward CL, Levandovsky A, Danielson CM, Sandrin V, Shi J, Aiken C, Zandi R, Hope TJ, Jensen GJ. 2013. Unclosed HIV-1 capsids suggest a curled sheet model of assembly. Journal of Molecular Biology 425:112-123. doi: 10.1016/j.jmb.2012.10.006.
-
(2013)
Journal of Molecular Biology
, vol.425
, pp. 112-123
-
-
Yu, Z.1
Dobro, M.J.2
Woodward, C.L.3
Levandovsky, A.4
Danielson, C.M.5
Sandrin, V.6
Shi, J.7
Aiken, C.8
Zandi, R.9
Hope, T.J.10
Jensen, G.J.11
-
66
-
-
77951708374
-
Reconstitution of the RIG-I pathway reveals a signaling role of unanchored polyubiquitin chains in innate immunity
-
doi: 10.1016/j.cell.2010.03.029
-
Zeng W, Sun L, Jiang X, Chen X, Hou F, Adhikari A, Xu M, Chen ZJ. 2010. Reconstitution of the RIG-I pathway reveals a signaling role of unanchored polyubiquitin chains in innate immunity. Cell 141:315-330. doi: 10.1016/j.cell.2010.03.029.
-
(2010)
Cell
, vol.141
, pp. 315-330
-
-
Zeng, W.1
Sun, L.2
Jiang, X.3
Chen, X.4
Hou, F.5
Adhikari, A.6
Xu, M.7
Chen, Z.J.8
-
67
-
-
77950352082
-
Crystal structures of the TRAF2: CIAP2 and the TRAF1: TRAF2: CIAP2 complexes: Affinity, specificity, and regulation
-
doi: 10.1016/j.molcel.2010.03.009
-
Zheng C, Kabaleeswaran V, Wang Y, Cheng G, Wu H. 2010. Crystal structures of the TRAF2: cIAP2 and the TRAF1: TRAF2: cIAP2 complexes: affinity, specificity, and regulation. Molecular Cell 38:101-113. doi: 10.1016/j.molcel.2010.03.009.
-
(2010)
Molecular Cell
, vol.38
, pp. 101-113
-
-
Zheng, C.1
Kabaleeswaran, V.2
Wang, Y.3
Cheng, G.4
Wu, H.5
|