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Volumn 9, Issue 1, 2014, Pages 45-52

Chromatin remodeling by the small rna machinery in mammalian cells

Author keywords

Argonaute; Chromatin; Epigenetics; miRNA; RNA activation; Small RNA; Transcription

Indexed keywords

ARGONAUTE PROTEIN; HETEROCHROMATIN; HISTONE; RNA BINDING PROTEIN; SMALL INTERFERING RNA;

EID: 84891930123     PISSN: 15592294     EISSN: 15592308     Source Type: Journal    
DOI: 10.4161/epi.26830     Document Type: Article
Times cited : (75)

References (85)
  • 1
    • 80052978224 scopus 로고    scopus 로고
    • Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses
    • PMID:21890647
    • Cabili MN, Trapnell C, Goff L, Koziol M, Tazon-Vega B, Regev A, Rinn JL. Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses. Genes Dev 2011; 25:1915-1927. PMID:21890647 http://dx.doi.org/10.1101/gad.17446611
    • (2011) Genes Dev , vol.25 , pp. 1915-1927
    • Cabili, M.N.1    Trapnell, C.2    Goff, L.3    Koziol, M.4    Tazon-Vega, B.5    Regev, A.6    Rinn, J.L.7
  • 2
  • 3
    • 77954572735 scopus 로고    scopus 로고
    • Long noncoding RNA as modular scaffold of histone modification complexes
    • PMID:20616235
    • Tsai MC, Manor O, Wan Y, Mosammaparast N, Wang JK, Lan F, Shi Y, Segal E, Chang HY. Long noncoding RNA as modular scaffold of histone modification complexes. Science 2010; 329:689-693. PMID:20616235 http://dx.doi.org/10.1126/ science.1192002
    • (2010) Science , vol.329 , pp. 689-693
    • Tsai, M.C.1    Manor, O.2    Wan, Y.3    Mosammaparast, N.4    Wang, J.K.5    Lan, F.6    Shi, Y.7    Segal, E.8    Chang, H.Y.9
  • 4
    • 80053045739 scopus 로고    scopus 로고
    • Molecular mechanisms of long noncoding RNAs
    • PMID:21925379
    • Wang KC, Chang HY. Molecular mechanisms of long noncoding RNAs. Mol Cell 2011; 43:904-914. PMID:21925379 http://dx.doi.org/10.1016/j. molcel.2011.08.018
    • (2011) Mol Cell , vol.43 , pp. 904-914
    • Wang, K.C.1    Chang, H.Y.2
  • 6
    • 4644309196 scopus 로고    scopus 로고
    • The functions of animal microRNAs
    • PMID:15372042
    • Ambros V. The functions of animal microRNAs. Nature 2004; 431:350-355. PMID:15372042 http://dx.doi.org/10.1038/nature02871
    • (2004) Nature , vol.431 , pp. 350-355
    • Ambros, V.1
  • 7
    • 1942435249 scopus 로고    scopus 로고
    • Micromanagers of gene expression: The potentially widespread influence of metazoan microRNAs
    • PMID:15143321
    • Bartel DP, Chen CZ. Micromanagers of gene expression: the potentially widespread influence of metazoan microRNAs. Nat Rev Genet 2004; 5:396-400. PMID:15143321 http://dx.doi.org/10.1038/nrg1328
    • (2004) Nat Rev Genet , vol.5 , pp. 396-400
    • Bartel, D.P.1    Chen, C.Z.2
  • 8
    • 84864300017 scopus 로고    scopus 로고
    • microRNA involvement in human cancer
    • PMID:22491715
    • Iorio MV, Croce CM. microRNA involvement in human cancer. Carcinogenesis 2012; 33:1126-1133. PMID:22491715 http://dx.doi.org/10.1093/carcin/bgs140
    • (2012) Carcinogenesis , vol.33 , pp. 1126-1133
    • Iorio, M.V.1    Croce, C.M.2
  • 9
    • 59949096548 scopus 로고    scopus 로고
    • Essential and overlapping functions for mammalian Argonautes in microRNA silencing
    • PMID:19174539
    • Su H, Trombly MI, Chen J, Wang X. Essential and overlapping functions for mammalian Argonautes in microRNA silencing. Genes Dev 2009; 23:304-317. PMID:19174539 http://dx.doi.org/10.1101/gad.1749809
    • (2009) Genes Dev , vol.23 , pp. 304-317
    • Su, H.1    Trombly, M.I.2    Chen, J.3    Wang, X.4
  • 11
    • 3242736704 scopus 로고    scopus 로고
    • Human Argonaute2 mediates RNA cleavage targeted by miRNAs and siRNAs
    • PMID:15260970
    • Meister G, Landthaler M, Patkaniowska A, Dorsett Y, Teng G, Tuschl T. Human Argonaute2 mediates RNA cleavage targeted by miRNAs and siRNAs. Mol Cell 2004; 15:185-197. PMID:15260970 http://dx.doi.org/10.1016/j.molcel.2004.07.007
    • (2004) Mol Cell , vol.15 , pp. 185-197
    • Meister, G.1    Landthaler, M.2    Patkaniowska, A.3    Dorsett, Y.4    Teng, G.5    Tuschl, T.6
  • 12
    • 84875177348 scopus 로고    scopus 로고
    • X-inactivation, imprinting, and long noncoding RNAs in health and disease
    • PMID:23498939
    • Lee JT, Bartolomei MS. X-inactivation, imprinting, and long noncoding RNAs in health and disease. Cell 2013; 152:1308-1323. PMID:23498939 http://dx.doi. org/10.1016/j.cell.2013.02.016
    • (2013) Cell , vol.152 , pp. 1308-1323
    • Lee, J.T.1    Bartolomei, M.S.2
  • 13
    • 0033166348 scopus 로고    scopus 로고
    • The rox1 and rox2 RNAs are essential components of the compensasome, which mediates dosage compensation in Drosophila
    • PMID:10445033
    • Franke A, Baker BS. The rox1 and rox2 RNAs are essential components of the compensasome, which mediates dosage compensation in Drosophila. Mol Cell 1999; 4:117-122. PMID:10445033 http://dx.doi.org/10.1016/S1097-2765(00)80193-8
    • (1999) Mol Cell , vol.4 , pp. 117-122
    • Franke, A.1    Baker, B.S.2
  • 14
    • 0028031830 scopus 로고
    • RNAdirected de novo methylation of genomic sequences in plants
    • PMID:8313476
    • Wassenegger M, Heimes S, Riedel L, Sänger HL. RNAdirected de novo methylation of genomic sequences in plants. Cell 1994; 76:567-576. PMID:8313476 http://dx.doi.org/10.1016/0092-8674(94)90119-8
    • (1994) Cell , vol.76 , pp. 567-576
    • Wassenegger, M.1    Heimes, S.2    Riedel, L.3    Sänger, H.L.4
  • 15
    • 0037072661 scopus 로고    scopus 로고
    • Regulation of heterochromatic silencing and histone H3 lysine-9 methylation by RNAi
    • PMID:12193640
    • Volpe TA, Kidner C, Hall IM, Teng G, Grewal SI, Martienssen RA. Regulation of heterochromatic silencing and histone H3 lysine-9 methylation by RNAi. Science 2002; 297:1833-1837. PMID:12193640 http://dx.doi.org/10.1126/science.1074973
    • (2002) Science , vol.297 , pp. 1833-1837
    • Volpe, T.A.1    Kidner, C.2    Hall, I.M.3    Teng, G.4    Grewal, S.I.5    Martienssen, R.A.6
  • 16
    • 0942279615 scopus 로고    scopus 로고
    • Heterochromatic silencing and HP1 localization in Drosophila are dependent on the RNAi machinery
    • PMID:14752161
    • Pal-Bhadra M, Leibovitch BA, Gandhi SG, Chikka MR, Bhadra U, Birchler JA, Elgin SC. Heterochromatic silencing and HP1 localization in Drosophila are dependent on the RNAi machinery. Science 2004; 303:669-672. PMID:14752161 http://dx.doi.org/10.1126/science.1092653
    • (2004) Science , vol.303 , pp. 669-672
    • Pal-Bhadra, M.1    Leibovitch, B.A.2    Gandhi, S.G.3    Chikka, M.R.4    Bhadra, U.5    Birchler, J.A.6    Elgin, S.C.7
  • 17
    • 0345306117 scopus 로고    scopus 로고
    • Transposon silencing in the Caenorhabditis elegans germ line by natural RNAi
    • PMID:14628056
    • Sijen T, Plasterk RH. Transposon silencing in the Caenorhabditis elegans germ line by natural RNAi. Nature 2003; 426:310-314. PMID:14628056 http://dx.doi.org/10.1038/nature02107
    • (2003) Nature , vol.426 , pp. 310-314
    • Sijen, T.1    Plasterk, R.H.2
  • 18
    • 4344705410 scopus 로고    scopus 로고
    • Small interfering RNA-induced transcriptional gene silencing in human cells
    • PMID:15297624
    • Morris KV, Chan SW, Jacobsen SE, Looney DJ. Small interfering RNA-induced transcriptional gene silencing in human cells. Science 2004; 305:1289-1292. PMID:15297624 http://dx.doi.org/10.1126/science.1101372
    • (2004) Science , vol.305 , pp. 1289-1292
    • Morris, K.V.1    Chan, S.W.2    Jacobsen, S.E.3    Looney, D.J.4
  • 19
    • 45849120571 scopus 로고    scopus 로고
    • The multifaceted small RNAs
    • PMID:18398309
    • Li LC. The multifaceted small RNAs. RNA Biol 2008; 5:61-64. PMID:18398309 http://dx.doi.org/10.4161/rna.5.2.5989
    • (2008) RNA Biol , vol.5 , pp. 61-64
    • Li, L.C.1
  • 20
    • 84984758049 scopus 로고    scopus 로고
    • Inhibiting gene expression at transcription start sites in chromosomal DNA with antigene RNAs
    • PMID:16408038
    • Janowski BA, Huffman KE, Schwartz JC, Ram R, Hardy D, Shames DS, Minna JD, Corey DR. Inhibiting gene expression at transcription start sites in chromosomal DNA with antigene RNAs. Nat Chem Biol 2005; 1:216-222. PMID:16408038 http://dx.doi.org/10.1038/nchembio725
    • (2005) Nat Chem Biol , vol.1 , pp. 216-222
    • Janowski, B.A.1    Huffman, K.E.2    Schwartz, J.C.3    Ram, R.4    Hardy, D.5    Shames, D.S.6    Minna, J.D.7    Corey, D.R.8
  • 21
    • 33847081733 scopus 로고    scopus 로고
    • Activating gene expression in mammalian cells with promoter-targeted duplex RNAs
    • PMID:17259978
    • Janowski BA, Younger ST, Hardy DB, Ram R, Huffman KE, Corey DR. Activating gene expression in mammalian cells with promoter-targeted duplex RNAs. Nat Chem Biol 2007; 3:166-173. PMID:17259978 http://dx.doi.org/10.1038/ nchembio860
    • (2007) Nat Chem Biol , vol.3 , pp. 166-173
    • Janowski, B.A.1    Younger, S.T.2    Hardy, D.B.3    Ram, R.4    Huffman, K.E.5    Corey, D.R.6
  • 22
    • 33748368912 scopus 로고    scopus 로고
    • Argonaute-1 directs siRNA-mediated transcriptional gene silencing in human cells
    • PMID:16936726
    • Kim DH, Villeneuve LM, Morris KV, Rossi JJ. Argonaute-1 directs siRNA-mediated transcriptional gene silencing in human cells. Nat Struct Mol Biol 2006; 13:793-797. PMID:16936726 http://dx.doi. org/10.1038/nsmb1142
    • (2006) Nat Struct Mol Biol , vol.13 , pp. 793-797
    • Kim, D.H.1    Villeneuve, L.M.2    Morris, K.V.3    Rossi, J.J.4
  • 23
    • 77954231525 scopus 로고    scopus 로고
    • Characterization of the RNA content of chromatin
    • PMID:20404130
    • Mondal T, Rasmussen M, Pandey GK, Isaksson A, Kanduri C. Characterization of the RNA content of chromatin. Genome Res 2010; 20:899-907. PMID:20404130 http://dx.doi.org/10.1101/gr.103473.109
    • (2010) Genome Res , vol.20 , pp. 899-907
    • Mondal, T.1    Rasmussen, M.2    Pandey, G.K.3    Isaksson, A.4    Kanduri, C.5
  • 24
    • 43149109529 scopus 로고    scopus 로고
    • RNA is an integral component of chromatin that contributes to its structural organization
    • PMID:18000552
    • Rodríguez-Campos A, Azorín F. RNA is an integral component of chromatin that contributes to its structural organization. PLoS One 2007; 2:e1182. PMID:18000552 http://dx.doi.org/10.1371/journal.pone.0001182
    • (2007) PLoS One , vol.2
    • Rodríguez-Campos, A.1    Azorín, F.2
  • 25
    • 56649122127 scopus 로고    scopus 로고
    • Fluorescence correlation spectroscopy and fluorescence cross-correlation spectroscopy reveal the cytoplasmic origination of loaded nuclear RISC in vivo in human cells
    • PMID:18842624
    • Ohrt T, Mütze J, Staroske W, Weinmann L, Höck J, Crell K, Meister G, Schwille P. Fluorescence correlation spectroscopy and fluorescence cross-correlation spectroscopy reveal the cytoplasmic origination of loaded nuclear RISC in vivo in human cells. Nucleic Acids Res 2008; 36:6439-6449. PMID:18842624 http://dx.doi.org/10.1093/nar/gkn693
    • (2008) Nucleic Acids Res , vol.36 , pp. 6439-6449
    • Ohrt, T.1    Mütze, J.2    Staroske, W.3    Weinmann, L.4    Höck, J.5    Crell, K.6    Meister, G.7    Schwille, P.8
  • 27
    • 84863229335 scopus 로고    scopus 로고
    • Direct evidence of nuclear Argonaute distribution during transcriptional silencing links the actin cytoskeleton to nuclear RNAi machinery in human cells
    • PMID:22064859
    • Ahlenstiel CL, Lim HG, Cooper DA, Ishida T, Kelleher AD, Suzuki K. Direct evidence of nuclear Argonaute distribution during transcriptional silencing links the actin cytoskeleton to nuclear RNAi machinery in human cells. Nucleic Acids Res 2012; 40:1579-1595. PMID:22064859 http://dx.doi. org/10.1093/nar/gkr891
    • (2012) Nucleic Acids Res , vol.40 , pp. 1579-1595
    • Ahlenstiel, C.L.1    Lim, H.G.2    Cooper, D.A.3    Ishida, T.4    Kelleher, A.D.5    Suzuki, K.6
  • 28
    • 77956278708 scopus 로고    scopus 로고
    • Deep sequencing of human nuclear and cytoplasmic small RNAs reveals an unexpectedly complex subcellular distribution of miRNAs and tRNA 3′ trailers
    • PMID:20498841
    • Liao JY, Ma LM, Guo YH, Zhang YC, Zhou H, Shao P, Chen YQ, Qu LH. Deep sequencing of human nuclear and cytoplasmic small RNAs reveals an unexpectedly complex subcellular distribution of miRNAs and tRNA 3′ trailers. PLoS One 2010; 5:e10563. PMID:20498841 http://dx.doi.org/10.1371/journal.pone.0010563
    • (2010) PLoS One , vol.5
    • Liao, J.Y.1    Ma, L.M.2    Guo, Y.H.3    Zhang, Y.C.4    Zhou, H.5    Shao, P.6    Chen, Y.Q.7    Qu, L.H.8
  • 29
    • 84884692746 scopus 로고    scopus 로고
    • Ago1 Interacts with RNA Polymerase II and Binds to the Promoters of Actively Transcribed Genes in Human Cancer Cells
    • PMID:24086155
    • Huang V, Zheng J, Qi Z, Wang J, Place RF, Yu J, Li H, Li LC. Ago1 Interacts with RNA Polymerase II and Binds to the Promoters of Actively Transcribed Genes in Human Cancer Cells. PLoS Genet 2013; 9:e1003821. PMID:24086155 http://dx.doi. org/10.1371/journal.pgen.1003821
    • (2013) PLoS Genet , vol.9
    • Huang, V.1    Zheng, J.2    Qi, Z.3    Wang, J.4    Place, R.F.5    Yu, J.6    Li, H.7    Li, L.C.8
  • 30
    • 78649874963 scopus 로고    scopus 로고
    • Involvement of argonaute proteins in gene silencing and activation by RNAs complementary to a non-coding transcript at the progesterone receptor promoter
    • PMID:20675357
    • Chu Y, Yue X, Younger ST, Janowski BA, Corey DR. Involvement of argonaute proteins in gene silencing and activation by RNAs complementary to a non-coding transcript at the progesterone receptor promoter. Nucleic Acids Res 2010; 38:7736-7748. PMID:20675357 http://dx.doi.org/10.1093/nar/ gkq648
    • (2010) Nucleic Acids Res , vol.38 , pp. 7736-7748
    • Chu, Y.1    Yue, X.2    Younger, S.T.3    Janowski, B.A.4    Corey, D.R.5
  • 31
    • 84860319206 scopus 로고    scopus 로고
    • Polycombs and microRNA-223 regulate human granulopoiesis by transcriptional control of target gene expression
    • PMID:22327224
    • Zardo G, Ciolfi A, Vian L, Starnes LM, Billi M, Racanicchi S, Maresca C, Fazi F, Travaglini L, Noguera N, et al. Polycombs and microRNA-223 regulate human granulopoiesis by transcriptional control of target gene expression. Blood 2012; 119:4034-4046. PMID:22327224 http://dx.doi.org/10.1182/ blood-2011-08-371344
    • (2012) Blood , vol.119 , pp. 4034-4046
    • Zardo, G.1    Ciolfi, A.2    Vian, L.3    Starnes, L.M.4    Billi, M.5    Racanicchi, S.6    Maresca, C.7    Fazi, F.8    Travaglini, L.9    Noguera, N.10
  • 33
    • 40349094597 scopus 로고    scopus 로고
    • MicroRNA-373 induces expression of genes with complementary promoter sequences
    • PMID:18227514
    • Place RF, Li LC, Pookot D, Noonan EJ, Dahiya R. MicroRNA-373 induces expression of genes with complementary promoter sequences. Proc Natl Acad Sci U S A 2008; 105:1608-1613. PMID:18227514 http://dx.doi.org/10.1073/pnas.0707594105
    • (2008) Proc Natl Acad Sci U S A , vol.105 , pp. 1608-1613
    • Place, R.F.1    Li, L.C.2    Pookot, D.3    Noonan, E.J.4    Dahiya, R.5
  • 34
    • 78650448697 scopus 로고    scopus 로고
    • Activation of LDL receptor expression by small RNAs complementary to a noncoding transcript that overlaps the LDLR promoter
    • PMID:21168770
    • Matsui M, Sakurai F, Elbashir S, Foster DJ, Manoharan M, Corey DR. Activation of LDL receptor expression by small RNAs complementary to a noncoding transcript that overlaps the LDLR promoter. Chem Biol 2010; 17:1344-1355. PMID:21168770 http://dx.doi.org/10.1016/j.chembiol.2010.10.009
    • (2010) Chem Biol , vol.17 , pp. 1344-1355
    • Matsui, M.1    Sakurai, F.2    Elbashir, S.3    Foster, D.J.4    Manoharan, M.5    Corey, D.R.6
  • 35
    • 84883166021 scopus 로고    scopus 로고
    • Targeted induction of endogenous NKX3-1 by small activating RNA inhibits prostate tumor growth
    • PMID:23836514
    • Ren S, Kang MR, Wang J, Huang V, Place RF, Sun Y, Li LC. Targeted induction of endogenous NKX3-1 by small activating RNA inhibits prostate tumor growth. Prostate 2013; 73:1591-1601. PMID:23836514 http://dx.doi.org/10.1002/pros.22709
    • (2013) Prostate , vol.73 , pp. 1591-1601
    • Ren, S.1    Kang, M.R.2    Wang, J.3    Huang, V.4    Place, R.F.5    Sun, Y.6    Li, L.C.7
  • 38
    • 23044507007 scopus 로고    scopus 로고
    • Short double-stranded RNA induces transcriptional gene silencing in human cancer cells in the absence of DNA methylation
    • PMID:16025112
    • Ting AH, Schuebel KE, Herman JG, Baylin SB. Short double-stranded RNA induces transcriptional gene silencing in human cancer cells in the absence of DNA methylation. Nat Genet 2005; 37:906-910. PMID:16025112 http://dx.doi.org/10.1038/ng1611
    • (2005) Nat Genet , vol.37 , pp. 906-910
    • Ting, A.H.1    Schuebel, K.E.2    Herman, J.G.3    Baylin, S.B.4
  • 39
    • 27944492405 scopus 로고    scopus 로고
    • Regulating mammalian transcription with RNA
    • PMID:16226463
    • Corey DR. Regulating mammalian transcription with RNA. Trends Biochem Sci 2005; 30:655-8. PMID:16226463 http://dx.doi.org/10.1016/j. tibs.2005.09.007
    • (2005) Trends Biochem Sci , vol.30 , pp. 655-658
    • Corey, D.R.1
  • 40
    • 84857377246 scopus 로고    scopus 로고
    • Small RNAs targeting transcription start site induce heparanase silencing through interference with transcription initiation in human cancer cells
    • PMID:22363633
    • Jiang G, Zheng L, Pu J, Mei H, Zhao J, Huang K, Zeng F, Tong Q. Small RNAs targeting transcription start site induce heparanase silencing through interference with transcription initiation in human cancer cells. PLoS One 2012; 7:e31379. PMID:22363633 http://dx.doi.org/10.1371/journal.pone.0031379
    • (2012) PLoS One , vol.7
    • Jiang, G.1    Zheng, L.2    Pu, J.3    Mei, H.4    Zhao, J.5    Huang, K.6    Zeng, F.7    Tong, Q.8
  • 41
    • 31044436469 scopus 로고    scopus 로고
    • Prolonged transcriptional silencing and CpG methylation induced by siRNAs targeted to the HIV-1 promoter region
    • PMID:19771207
    • Suzuki K, Shijuuku T, Fukamachi T, Zaunders J, Guillemin G, Cooper D, Kelleher A. Prolonged transcriptional silencing and CpG methylation induced by siRNAs targeted to the HIV-1 promoter region. J RNAi Gene Silencing 2005; 1:66-78. PMID:19771207.
    • (2005) J RNAi Gene Silencing , vol.1 , pp. 66-78
    • Suzuki, K.1    Shijuuku, T.2    Fukamachi, T.3    Zaunders, J.4    Guillemin, G.5    Cooper, D.6    Kelleher, A.7
  • 42
    • 64549113392 scopus 로고    scopus 로고
    • Retroviral delivery of promoter-targeted shRNA induces longterm silencing of HIV-1 transcription
    • PMID:19233310
    • Yamagishi M, Ishida T, Miyake A, Cooper DA, Kelleher AD, Suzuki K, Watanabe T. Retroviral delivery of promoter-targeted shRNA induces longterm silencing of HIV-1 transcription. Microbes Infect 2009; 11:500-508. PMID:19233310 http://dx.doi.org/10.1016/j.micinf.2009.02.003
    • (2009) Microbes Infect , vol.11 , pp. 500-508
    • Yamagishi, M.1    Ishida, T.2    Miyake, A.3    Cooper, D.A.4    Kelleher, A.D.5    Suzuki, K.6    Watanabe, T.7
  • 43
    • 84879604001 scopus 로고    scopus 로고
    • Short hairpin RNA induces methylation of hepatitis B virus covalently closed circular DNA in human hepatoma cells
    • PMID:23727428
    • Park HK, Min BY, Kim NY, Jang ES, Shin CM, Park YS, Hwang JH, Jeong SH, Kim N, Lee DH, et al. Short hairpin RNA induces methylation of hepatitis B virus covalently closed circular DNA in human hepatoma cells. Biochem Biophys Res Commun 2013; 436:152-155. PMID:23727428 http://dx.doi. org/10.1016/j.bbrc.2013.04.108
    • (2013) Biochem Biophys Res Commun , vol.436 , pp. 152-155
    • Park, H.K.1    Min, B.Y.2    Kim, N.Y.3    Jang, E.S.4    Shin, C.M.5    Park, Y.S.6    Hwang, J.H.7    Jeong, S.H.8    Kim, N.9    Lee, D.H.10
  • 44
    • 52049098967 scopus 로고    scopus 로고
    • A piRNA pathway primed by individual transposons is linked to de novo DNA methylation in mice
    • PMID:18922463
    • Aravin AA, Sachidanandam R, Bourc'his D, Schaefer C, Pezic D, Toth KF, Bestor T, Hannon GJ. A piRNA pathway primed by individual transposons is linked to de novo DNA methylation in mice. Mol Cell 2008; 31:785-799. PMID:18922463 http://dx.doi. org/10.1016/j.molcel.2008.09.003
    • (2008) Mol Cell , vol.31 , pp. 785-799
    • Aravin, A.A.1    Sachidanandam, R.2    Bourc'his, D.3    Schaefer, C.4    Pezic, D.5    Toth, K.F.6    Bestor, T.7    Hannon, G.J.8
  • 46
    • 42349099338 scopus 로고    scopus 로고
    • A requirement for DICER to maintain full promoter CpG island hypermethylation in human cancer cells
    • PMID:18413723
    • Ting AH, Suzuki H, Cope L, Schuebel KE, Lee BH, Toyota M, Imai K, Shinomura Y, Tokino T, Baylin SB. A requirement for DICER to maintain full promoter CpG island hypermethylation in human cancer cells. Cancer Res 2008; 68:2570-2575. PMID:18413723 http://dx.doi.org/10.1158/0008-5472.CAN-07-6405
    • (2008) Cancer Res , vol.68 , pp. 2570-2575
    • Ting, A.H.1    Suzuki, H.2    Cope, L.3    Schuebel, K.E.4    Lee, B.H.5    Toyota, M.6    Imai, K.7    Shinomura, Y.8    Tokino, T.9    Baylin, S.B.10
  • 47
    • 84863799077 scopus 로고    scopus 로고
    • Naturally occurring endo-siRNA silences LINE-1 retrotransposons in human cells through DNA methylation
    • PMID:22647391
    • Chen L, Dahlstrom JE, Lee SH, Rangasamy D. Naturally occurring endo-siRNA silences LINE-1 retrotransposons in human cells through DNA methylation. Epigenetics 2012; 7:758-771. PMID:22647391 http://dx.doi.org/10.4161/epi.20706
    • (2012) Epigenetics , vol.7 , pp. 758-771
    • Chen, L.1    Dahlstrom, J.E.2    Lee, S.H.3    Rangasamy, D.4
  • 48
    • 0035942736 scopus 로고    scopus 로고
    • Duplexes of 21-nucleotide RNAs mediate RNA interference in cultured mammalian cells
    • PMID:11373684
    • Elbashir SM, Harborth J, Lendeckel W, Yalcin A, Weber K, Tuschl T. Duplexes of 21-nucleotide RNAs mediate RNA interference in cultured mammalian cells. Nature 2001; 411:494-498. PMID:11373684 http://dx.doi.org/10.1038/35078107
    • (2001) Nature , vol.411 , pp. 494-498
    • Elbashir, S.M.1    Harborth, J.2    Lendeckel, W.3    Yalcin, A.4    Weber, K.5    Tuschl, T.6
  • 49
    • 0032545933 scopus 로고    scopus 로고
    • Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans
    • PMID:9486653
    • Fire A, Xu S, Montgomery MK, Kostas SA, Driver SE, Mello CC. Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans. Nature 1998; 391:806-811. PMID:9486653 http://dx.doi.org/10.1038/35888
    • (1998) Nature , vol.391 , pp. 806-811
    • Fire, A.1    Xu, S.2    Montgomery, M.K.3    Kostas, S.A.4    Driver, S.E.5    Mello, C.C.6
  • 50
    • 84862833567 scopus 로고    scopus 로고
    • Small RNA and transcriptional upregulation
    • PMID:21823233
    • Portnoy V, Huang V, Place RF, Li LC. Small RNA and transcriptional upregulation. Wiley Interdiscip Rev RNA 2011; 2:748-760. PMID:21823233 http://dx.doi.org/10.1002/wrna.90
    • (2011) Wiley Interdiscip Rev RNA , vol.2 , pp. 748-760
    • Portnoy, V.1    Huang, V.2    Place, R.F.3    Li, L.C.4
  • 51
    • 53149132028 scopus 로고    scopus 로고
    • Closed chromatin architecture is induced by an RNA duplex targeting the HIV-1 promoter region
    • PMID:18519571
    • Suzuki K, Juelich T, Lim H, Ishida T, Watanebe T, Cooper DA, Rao S, Kelleher AD. Closed chromatin architecture is induced by an RNA duplex targeting the HIV-1 promoter region. J Biol Chem 2008; 283:23353-23363. PMID:18519571 http://dx.doi. org/10.1074/jbc.M709651200
    • (2008) J Biol Chem , vol.283 , pp. 23353-23363
    • Suzuki, K.1    Juelich, T.2    Lim, H.3    Ishida, T.4    Watanebe, T.5    Cooper, D.A.6    Rao, S.7    Kelleher, A.D.8
  • 52
    • 77956599498 scopus 로고    scopus 로고
    • Defining features and exploring chemical modifications to manipulate RNAa activity
    • PMID:20662764
    • Place RF, Noonan EJ, Földes-Papp Z, Li LC. Defining features and exploring chemical modifications to manipulate RNAa activity. Curr Pharm Biotechnol 2010; 11:518-526. PMID:20662764 http://dx.doi.org/10.2174/138920110791591463
    • (2010) Curr Pharm Biotechnol , vol.11 , pp. 518-526
    • Place, R.F.1    Noonan, E.J.2    Földes-Papp, Z.3    Li, L.C.4
  • 53
    • 84860136644 scopus 로고    scopus 로고
    • Induction of NANOG expression by targeting promoter sequence with small activating RNA antagonizes retinoic acid-induced differentiation
    • PMID:22339500
    • Wang X, Wang J, Huang V, Place RF, Li LC. Induction of NANOG expression by targeting promoter sequence with small activating RNA antagonizes retinoic acid-induced differentiation. Biochem J 2012; 443:821-828. PMID:22339500 http://dx.doi. org/10.1042/BJ20111491
    • (2012) Biochem J , vol.443 , pp. 821-828
    • Wang, X.1    Wang, J.2    Huang, V.3    Place, R.F.4    Li, L.C.5
  • 54
    • 66249108936 scopus 로고    scopus 로고
    • Promoter targeted small RNAs induce long-term transcriptional gene silencing in human cells
    • PMID:19304753
    • Hawkins PG, Santoso S, Adams C, Anest V, Morris KV. Promoter targeted small RNAs induce long-term transcriptional gene silencing in human cells. Nucleic Acids Res 2009; 37:2984-2995. PMID:19304753 http://dx.doi.org/10.1093/nar/gkp127
    • (2009) Nucleic Acids Res , vol.37 , pp. 2984-2995
    • Hawkins, P.G.1    Santoso, S.2    Adams, C.3    Anest, V.4    Morris, K.V.5
  • 55
    • 84861670544 scopus 로고    scopus 로고
    • Characterization of an HIV-targeted transcriptional gene-silencing RNA in primary cells
    • PMID:22122263
    • Turner AM, Ackley AM, Matrone MA, Morris KV. Characterization of an HIV-targeted transcriptional gene-silencing RNA in primary cells. Hum Gene Ther 2012; 23:473-483. PMID:22122263 http://dx.doi.org/10.1089/hum.2011.165
    • (2012) Hum Gene Ther , vol.23 , pp. 473-483
    • Turner, A.M.1    Ackley, A.M.2    Matrone, M.A.3    Morris, K.V.4
  • 56
    • 84892472993 scopus 로고    scopus 로고
    • Long-term suppression of HIV-1C virus production in human peripheral blood mononuclear cells by LTR heterochromatization with a short double-stranded RNA
    • Forthcoming, PMID:24022068
    • Singh A, Palanichamy JK, Ramalingam P, Kassab MA, Bhagat M, Andrabi R, Luthra K, Sinha S, Chattopadhyay P. Long-term suppression of HIV-1C virus production in human peripheral blood mononuclear cells by LTR heterochromatization with a short double-stranded RNA. J Antimicrob Chemother 2013; (Forthcoming) PMID:24022068 http://dx.doi.org/10.1093/jac/dkt348
    • (2013) J Antimicrob Chemother
    • Singh, A.1    Palanichamy, J.K.2    Ramalingam, P.3    Kassab, M.A.4    Bhagat, M.5    Andrabi, R.6    Luthra, K.7    Sinha, S.8    Chattopadhyay, P.9
  • 57
  • 59
    • 0034946061 scopus 로고    scopus 로고
    • Methylation of the E-cadherin gene promoter correlates with progression of prostate cancer
    • PMID:11458121
    • Li LC, Zhao H, Nakajima K, Oh BR, Ribeiro Filho LA, Carroll P, Dahiya R. Methylation of the E-cadherin gene promoter correlates with progression of prostate cancer. J Urol 2001; 166:705-709. PMID:11458121 http://dx.doi.org/10.1016/S0022-5347(05)66047-8
    • (2001) J Urol , vol.166 , pp. 705-709
    • Li, L.C.1    Zhao, H.2    Nakajima, K.3    Oh, B.R.4    Ribeiro, F.L.A.5    Carroll, P.6    Dahiya, R.7
  • 60
    • 70349239135 scopus 로고    scopus 로고
    • Efficient regulation of VEGF expression by promoter-targeted lentiviral shRNAs based on epigenetic mechanism: A novel example of epigenetherapy
    • PMID:19696410
    • Turunen MP, Lehtola T, Heinonen SE, Assefa GS, Korpisalo P, Girnary R, Glass CK, Väisänen S, Ylä-Herttuala S. Efficient regulation of VEGF expression by promoter-targeted lentiviral shRNAs based on epigenetic mechanism: a novel example of epigenetherapy. Circ Res 2009; 105:604-609. PMID:19696410 http://dx.doi.org/10.1161/CIRCRESAHA.109.200774
    • (2009) Circ Res , vol.105 , pp. 604-609
    • Turunen, M.P.1    Lehtola, T.2    Heinonen, S.E.3    Assefa, G.S.4    Korpisalo, P.5    Girnary, R.6    Glass, C.K.7    Väisänen, S.8    Ylä-Herttuala, S.9
  • 62
    • 84863116114 scopus 로고    scopus 로고
    • Expanding the action of duplex RNAs into the nucleus: Redirecting alternative splicing
    • PMID:21948593
    • Liu J, Hu J, Corey DR. Expanding the action of duplex RNAs into the nucleus: redirecting alternative splicing. Nucleic Acids Res 2012; 40:1240-1250. PMID:21948593 http://dx.doi.org/10.1093/nar/gkr780
    • (2012) Nucleic Acids Res , vol.40 , pp. 1240-1250
    • Liu, J.1    Hu, J.2    Corey, D.R.3
  • 63
    • 67649774470 scopus 로고    scopus 로고
    • Predicting potential miRNA target sites within gene promoters
    • PMID:19423343
    • Younger ST, Pertsemlidis A, Corey DR. Predicting potential miRNA target sites within gene promoters. Bioorg Med Chem Lett 2009; 19:3791-3794. PMID:19423343 http://dx.doi.org/10.1016/j.bmcl.2009.04.032
    • (2009) Bioorg Med Chem Lett , vol.19 , pp. 3791-3794
    • Younger, S.T.1    Pertsemlidis, A.2    Corey, D.R.3
  • 64
    • 84860729656 scopus 로고    scopus 로고
    • miRNA goes nuclear
    • PMID:22336708
    • Huang V, Li LC. miRNA goes nuclear. RNA Biol 2012; 9:269-273. PMID:22336708 http://dx.doi.org/10.4161/rna.19354
    • (2012) RNA Biol , vol.9 , pp. 269-273
    • Huang, V.1    Li, L.C.2
  • 66
    • 55849135596 scopus 로고    scopus 로고
    • MicroRNA-directed transcriptional gene silencing in mammalian cells
    • PMID:18852463
    • Kim DH, Saetrom P, Snøve O Jr., Rossi JJ. MicroRNA-directed transcriptional gene silencing in mammalian cells. Proc Natl Acad Sci U S A 2008; 105:16230-16235. PMID:18852463 http://dx.doi. org/10.1073/pnas.0808830105
    • (2008) Proc Natl Acad Sci U S A , vol.105 , pp. 16230-16235
    • Kim, D.H.1    Saetrom, P.2    Snøve Jr., O.3    Rossi, J.J.4
  • 67
    • 79959347056 scopus 로고    scopus 로고
    • Transcriptional gene silencing in mammalian cells by miRNA mimics that target gene promoters
    • PMID:21427083
    • Younger ST, Corey DR. Transcriptional gene silencing in mammalian cells by miRNA mimics that target gene promoters. Nucleic Acids Res 2011; 39:5682-5691. PMID:21427083 http://dx.doi.org/10.1093/nar/ gkr155
    • (2011) Nucleic Acids Res , vol.39 , pp. 5682-5691
    • Younger, S.T.1    Corey, D.R.2
  • 68
    • 65549158866 scopus 로고    scopus 로고
    • Transcriptional inhibiton of Hoxd4 expression by miRNA-10a in human breast cancer cells
    • PMID:19232136
    • Tan Y, Zhang B, Wu T, Skogerbø G, Zhu X, Guo X, He S, Chen R. Transcriptional inhibiton of Hoxd4 expression by miRNA-10a in human breast cancer cells. BMC Mol Biol 2009; 10:12. PMID:19232136 http://dx.doi.org/10.1186/1471-2199-10-12
    • (2009) BMC Mol Biol , vol.10 , pp. 12
    • Tan, Y.1    Zhang, B.2    Wu, T.3    Skogerbø, G.4    Zhu, X.5    Guo, X.6    He, S.7    Chen, R.8
  • 69
    • 28344438648 scopus 로고    scopus 로고
    • A minicircuitry comprised of microRNA-223 and transcription factors NFI-A and C/EBPalpha regulates human granulopoiesis
    • PMID:16325577
    • Fazi F, Rosa A, Fatica A, Gelmetti V, De Marchis ML, Nervi C, Bozzoni I. A minicircuitry comprised of microRNA-223 and transcription factors NFI-A and C/EBPalpha regulates human granulopoiesis. Cell 2005; 123:819-831. PMID:16325577 http://dx.doi. org/10.1016/j.cell.2005.09.023
    • (2005) Cell , vol.123 , pp. 819-831
    • Fazi, F.1    Rosa, A.2    Fatica, A.3    Gelmetti, V.4    de Marchis, M.L.5    Nervi, C.6    Bozzoni, I.7
  • 70
    • 23044498502 scopus 로고    scopus 로고
    • Comprehensive analysis of heterochromatin-and RNAi-mediated epigenetic control of the fission yeast genome
    • PMID:15976807
    • Cam HP, Sugiyama T, Chen ES, Chen X, FitzGerald PC, Grewal SI. Comprehensive analysis of heterochromatin-and RNAi-mediated epigenetic control of the fission yeast genome. Nat Genet 2005; 37:809-819. PMID:15976807 http://dx.doi.org/10.1038/ng1602
    • (2005) Nat Genet , vol.37 , pp. 809-819
    • Cam, H.P.1    Sugiyama, T.2    Chen, E.S.3    Chen, X.4    Fitzgerald, P.C.5    Grewal, S.I.6
  • 71
    • 34249317118 scopus 로고    scopus 로고
    • RNAi-mediated heterochromatin assembly in fission yeast
    • PMID:17381331
    • Zofall M, Grewal SI. RNAi-mediated heterochromatin assembly in fission yeast. Cold Spring Harb Symp Quant Biol 2006; 71:487-496. PMID:17381331 http://dx.doi.org/10.1101/sqb.2006.71.059
    • (2006) Cold Spring Harb Symp Quant Biol , vol.71 , pp. 487-496
    • Zofall, M.1    Grewal, S.I.2
  • 72
    • 84860388943 scopus 로고    scopus 로고
    • RNAi-independent role for Argonaute2 in CTCF/CP190 chromatin insulator function
    • PMID:21852534
    • Moshkovich N, Nisha P, Boyle PJ, Thompson BA, Dale RK, Lei EP. RNAi-independent role for Argonaute2 in CTCF/CP190 chromatin insulator function. Genes Dev 2011; 25:1686-1701. PMID:21852534 http://dx.doi.org/10.1101/ gad.16651211
    • (2011) Genes Dev , vol.25 , pp. 1686-1701
    • Moshkovich, N.1    Nisha, P.2    Boyle, P.J.3    Thompson, B.A.4    Dale, R.K.5    Lei, E.P.6
  • 74
    • 84857784512 scopus 로고    scopus 로고
    • Senescence is an endogenous trigger for microRNAdirected transcriptional gene silencing in human cells
    • PMID:22366686
    • Benhamed M, Herbig U, Ye T, Dejean A, Bischof O. Senescence is an endogenous trigger for microRNAdirected transcriptional gene silencing in human cells. Nat Cell Biol 2012; 14:266-275. PMID:22366686 http://dx.doi.org/10.1038/ncb2443
    • (2012) Nat Cell Biol , vol.14 , pp. 266-275
    • Benhamed, M.1    Herbig, U.2    Ye, T.3    Dejean, A.4    Bischof, O.5
  • 75
    • 84865266916 scopus 로고    scopus 로고
    • Slicingindependent RISC activation requires the argonaute PAZ domain
    • PMID:22795694
    • Gu S, Jin L, Huang Y, Zhang F, Kay MA. Slicingindependent RISC activation requires the argonaute PAZ domain. Curr Biol 2012; 22:1536-1542. PMID:22795694 http://dx.doi.org/10.1016/j. cub.2012.06.040
    • (2012) Curr Biol , vol.22 , pp. 1536-1542
    • Gu, S.1    Jin, L.2    Huang, Y.3    Zhang, F.4    Kay, M.A.5
  • 76
    • 84876351771 scopus 로고    scopus 로고
    • Functional small RNAs are generated from select miRNA hairpin loops in flies and mammals
    • PMID:23535236
    • Okamura K, Ladewig E, Zhou L, Lai EC. Functional small RNAs are generated from select miRNA hairpin loops in flies and mammals. Genes Dev 2013; 27:778-792. PMID:23535236 http://dx.doi. org/10.1101/gad.211698.112
    • (2013) Genes Dev , vol.27 , pp. 778-792
    • Okamura, K.1    Ladewig, E.2    Zhou, L.3    Lai, E.C.4
  • 77
    • 0642345790 scopus 로고    scopus 로고
    • Structure and conserved RNA binding of the PAZ domain
    • PMID:14615802
    • Yan KS, Yan S, Farooq A, Han A, Zeng L, Zhou MM. Structure and conserved RNA binding of the PAZ domain. Nature 2003; 426:468-474. PMID:14615802 http://dx.doi.org/10.1038/nature02129
    • (2003) Nature , vol.426 , pp. 468-474
    • Yan, K.S.1    Yan, S.2    Farooq, A.3    Han, A.4    Zeng, L.5    Zhou, M.M.6
  • 78
    • 84875422712 scopus 로고    scopus 로고
    • Profiling of T helper cell-derived small RNAs reveals unique antisense transcripts and differential association of miRNAs with argonaute proteins 1 and 2
    • PMID:23185045
    • Polikepahad S, Corry DB. Profiling of T helper cell-derived small RNAs reveals unique antisense transcripts and differential association of miRNAs with argonaute proteins 1 and 2. Nucleic Acids Res 2013; 41:1164-1177. PMID:23185045 http://dx.doi. org/10.1093/nar/gks1098
    • (2013) Nucleic Acids Res , vol.41 , pp. 1164-1177
    • Polikepahad, S.1    Corry, D.B.2
  • 79
    • 70449953975 scopus 로고    scopus 로고
    • The complex eukaryotic transcriptome: Unexpected pervasive transcription and novel small RNAs
    • PMID:19920851
    • Jacquier A. The complex eukaryotic transcriptome: unexpected pervasive transcription and novel small RNAs. Nat Rev Genet 2009; 10:833-844. PMID:19920851 http://dx.doi.org/10.1038/ nrg2683
    • (2009) Nat Rev Genet , vol.10 , pp. 833-844
    • Jacquier, A.1
  • 81
    • 71449095148 scopus 로고    scopus 로고
    • Distinct passenger strand and mRNA cleavage activities of human Argonaute proteins
    • PMID:19946268
    • Wang B, Li S, Qi HH, Chowdhury D, Shi Y, Novina CD. Distinct passenger strand and mRNA cleavage activities of human Argonaute proteins. Nat Struct Mol Biol 2009; 16:1259-1266. PMID:19946268 http://dx.doi.org/10.1038/nsmb.1712
    • (2009) Nat Struct Mol Biol , vol.16 , pp. 1259-1266
    • Wang, B.1    Li, S.2    Qi, H.H.3    Chowdhury, D.4    Shi, Y.5    Novina, C.D.6
  • 82
    • 78650306521 scopus 로고    scopus 로고
    • Small RNA sorting: Matchmaking for Argonautes
    • PMID:21116305
    • Czech B, Hannon GJ. Small RNA sorting: matchmaking for Argonautes. Nat Rev Genet 2011; 12:19-31. PMID:21116305 http://dx.doi.org/10.1038/ nrg2916
    • (2011) Nat Rev Genet , vol.12 , pp. 19-31
    • Czech, B.1    Hannon, G.J.2
  • 83
    • 67649537602 scopus 로고    scopus 로고
    • Promoter-specific transcriptional interference and c-myc gene silencing by siRNAs in human cells
    • PMID:19461583
    • Napoli S, Pastori C, Magistri M, Carbone GM, Catapano CV. Promoter-specific transcriptional interference and c-myc gene silencing by siRNAs in human cells. EMBO J 2009; 28:1708-1719. PMID:19461583 http://dx.doi.org/10.1038/ emboj.2009.139
    • (2009) EMBO J , vol.28 , pp. 1708-1719
    • Napoli, S.1    Pastori, C.2    Magistri, M.3    Carbone, G.M.4    Catapano, C.V.5
  • 84
    • 27744506761 scopus 로고    scopus 로고
    • Argonaute2 cleaves the anti-guide strand of siRNA during RISC activation
    • PMID:16271385
    • Rand TA, Petersen S, Du F, Wang X. Argonaute2 cleaves the anti-guide strand of siRNA during RISC activation. Cell 2005; 123:621-629. PMID:16271385 http://dx.doi.org/10.1016/j.cell.2005.10.020
    • (2005) Cell , vol.123 , pp. 621-629
    • Rand, T.A.1    Petersen, S.2    Du, F.3    Wang, X.4
  • 85
    • 27744590896 scopus 로고    scopus 로고
    • Passenger-strand cleavage facilitates assembly of siRNA into Ago2-containing RNAi enzyme complexes
    • PMID:16271386
    • Matranga C, Tomari Y, Shin C, Bartel DP, Zamore PD. Passenger-strand cleavage facilitates assembly of siRNA into Ago2-containing RNAi enzyme complexes. Cell 2005; 123:607-620. PMID:16271386 http://dx.doi.org/10.1016/j.cell.2005.08.044
    • (2005) Cell , vol.123 , pp. 607-620
    • Matranga, C.1    Tomari, Y.2    Shin, C.3    Bartel, D.P.4    Zamore, P.D.5


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