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Volumn 27, Issue 7, 2013, Pages 778-792

Functional small RNAs are generated from select miRNA hairpin loops in flies and mammals

Author keywords

Argonaute protein; Mirna hairpin loop; Small RNA loading

Indexed keywords

ARGONAUTE 1 PROTEIN; ARGONAUTE 2 PROTEIN; ARGONAUTE PROTEIN; DOUBLE STRANDED RNA; MICRORNA; SHORT HAIRPIN RNA; SINGLE STRANDED RNA;

EID: 84876351771     PISSN: 08909369     EISSN: 15495477     Source Type: Journal    
DOI: 10.1101/gad.211698.112     Document Type: Article
Times cited : (55)

References (75)
  • 2
    • 78650468331 scopus 로고    scopus 로고
    • Target RNA-directed tailing and trimming purifies the sorting of endo-siRNAs between the two Drosophila Argonaute proteins
    • Ameres SL, Hung JH, Xu J, Weng Z, Zamore PD. 2011. Target RNA-directed tailing and trimming purifies the sorting of endo-siRNAs between the two Drosophila Argonaute proteins. RNA 17: 54-63.
    • (2011) RNA , vol.17 , pp. 54-63
    • Ameres, S.L.1    Hung, J.H.2    Xu, J.3    Weng, Z.4    Zamore, P.D.5
  • 4
    • 80555135929 scopus 로고    scopus 로고
    • Another 'loophole' in miRNA processing
    • Bajan S, Hutvagner G. 2011. Another 'loophole' in miRNA processing. Mol Cell 44: 345-347.
    • (2011) Mol Cell , vol.44 , pp. 345-347
    • Bajan, S.1    Hutvagner, G.2
  • 6
    • 84876059864 scopus 로고    scopus 로고
    • MiRNA-like duplexes as RNAi triggers with improved specificity
    • Betancur JG, Yoda M, and Tomari Y. 2012. miRNA-like duplexes as RNAi triggers with improved specificity. Front Genet 3: 127.
    • (2012) Front Genet , vol.3 , pp. 127
    • Betancur, J.G.1    Yoda, M.2    Tomari, Y.3
  • 10
    • 78650306521 scopus 로고    scopus 로고
    • Small RNA sorting: Matchmaking for Argonautes
    • Czech B, Hannon GJ. 2010. Small RNA sorting: Matchmaking for Argonautes. Nat Rev Genet 12: 19-31.
    • (2010) Nat Rev Genet , vol.12 , pp. 19-31
    • Czech, B.1    Hannon, G.J.2
  • 13
    • 70350705948 scopus 로고    scopus 로고
    • Repertoire and evolution of miRNA genes in four divergent nematode species
    • de Wit E, Linsen SE, Cuppen E, Berezikov E. 2009. Repertoire and evolution of miRNA genes in four divergent nematode species. Genome Res 19: 2064-2074.
    • (2009) Genome Res , vol.19 , pp. 2064-2074
    • de Wit, E.1    Linsen, S.E.2    Cuppen, E.3    Berezikov, E.4
  • 14
    • 0035863097 scopus 로고    scopus 로고
    • RNA interference is mediated by 21- and 22-nucleotide RNAs
    • Elbashir SM, Lendeckel W, Tuschl T. 2001. RNA interference is mediated by 21- and 22-nucleotide RNAs. Genes Dev 15: 188-200.
    • (2001) Genes Dev , vol.15 , pp. 188-200
    • Elbashir, S.M.1    Lendeckel, W.2    Tuschl, T.3
  • 17
    • 54149095553 scopus 로고    scopus 로고
    • Biological principles of microRNA- mediated regulation: Shared themes amid diversity
    • Flynt AS, Lai EC. 2008. Biological principles of microRNA- mediated regulation: Shared themes amid diversity. Nat Rev Genet 9: 831-842.
    • (2008) Nat Rev Genet , vol.9 , pp. 831-842
    • Flynt, A.S.1    Lai, E.C.2
  • 18
    • 34447291764 scopus 로고    scopus 로고
    • Drosophila microRNAs are sorted into functionally distinct argonaute complexes after production by dicer-1
    • Forstemann K, Horwich MD, Wee L, Tomari Y, Zamore PD. Drosophila microRNAs are sorted into functionally distinct argonaute complexes after production by dicer-1. Cell 130: 287-297.
    • Cell , vol.130 , pp. 287-297
    • Forstemann, K.1    Horwich, M.D.2    Wee, L.3    Tomari, Y.4    Zamore, P.D.5
  • 19
    • 77953479619 scopus 로고    scopus 로고
    • Structural basis for 5'-nucleotide base-specific recognition of guide RNA by human AGO2
    • Frank F, Sonenberg N, Nagar B. 2010. Structural basis for 5'-nucleotide base-specific recognition of guide RNA by human AGO2. Nature 465: 818-822.
    • (2010) Nature , vol.465 , pp. 818-822
    • Frank, F.1    Sonenberg, N.2    Nagar, B.3
  • 21
    • 75649129754 scopus 로고    scopus 로고
    • Sorting of Drosophila small silencing RNAs partitions microRNA* strands into the RNA interference pathway
    • Ghildiyal M, Xu J, Seitz H, Weng Z, Zamore PD. 2010. Sorting of Drosophila small silencing RNAs partitions microRNA* strands into the RNA interference pathway. RNA 16: 43-56.
    • (2010) RNA , vol.16 , pp. 43-56
    • Ghildiyal, M.1    Xu, J.2    Seitz, H.3    Weng, Z.4    Zamore, P.D.5
  • 23
    • 81355125071 scopus 로고    scopus 로고
    • The 3'-to-5' exoribonuclease Nibbler shapes the 3' ends of microRNAs bound to Drosophila Argonaute1
    • Han BW, Hung JH, Weng Z, Zamore PD, Ameres SL. 2011. The 3'-to-5' exoribonuclease Nibbler shapes the 3' ends of microRNAs bound to Drosophila Argonaute1. Curr Biol 21: 1878-1887.
    • (2011) Curr Biol , vol.21 , pp. 1878-1887
    • Han, B.W.1    Hung, J.H.2    Weng, Z.3    Zamore, P.D.4    Ameres, S.L.5
  • 24
    • 84862922523 scopus 로고    scopus 로고
    • Cell-type-based analysis of microRNA profiles in the mouse brain
    • He M, Liu Y, Wang X, Zhang MQ, Hannon GJ, Huang ZJ. 2012. Cell-type-based analysis of microRNA profiles in the mouse brain. Neuron 73: 35-48.
    • (2012) Neuron , vol.73 , pp. 35-48
    • He, M.1    Liu, Y.2    Wang, X.3    Zhang, M.Q.4    Hannon, G.J.5    Huang, Z.J.6
  • 25
    • 34447291602 scopus 로고    scopus 로고
    • The Drosophila RNA methyltransferase, DmHen1, modifies germline piRNAs and single-stranded siRNAs in RISC
    • Horwich MD, Li C, Matranga C, Vagin V, Farley G, Wang P, Zamore PD. 2007. The Drosophila RNA methyltransferase, DmHen1, modifies germline piRNAs and single-stranded siRNAs in RISC. Curr Biol 17: 1265-1272.
    • (2007) Curr Biol , vol.17 , pp. 1265-1272
    • Horwich, M.D.1    Li, C.2    Matranga, C.3    Vagin, V.4    Farley, G.5    Wang, P.6    Zamore, P.D.7
  • 27
    • 84868589615 scopus 로고    scopus 로고
    • Biology of PIWI-interacting RNAs: New insights into biogenesis and function inside and outside of germlines
    • Ishizu H, Siomi H, Siomi MC. 2012. Biology of PIWI-interacting RNAs: New insights into biogenesis and function inside and outside of germlines. Genes Dev 26: 2361-2373.
    • (2012) Genes Dev , vol.26 , pp. 2361-2373
    • Ishizu, H.1    Siomi, H.2    Siomi, M.C.3
  • 28
  • 29
    • 77951712353 scopus 로고    scopus 로고
    • HSP90 protein stabilizes unloaded argonaute complexes and microscopic P-bodies in human cells
    • Johnston M, Geoffroy MC, Sobala A, Hay R, Hutvagner G. 2010. HSP90 protein stabilizes unloaded argonaute complexes and microscopic P-bodies in human cells. Mol Biol Cell 21: 1462-1469.
    • (2010) . Mol Biol Cell , vol.21 , pp. 1462-1469
    • Johnston, M.1    Geoffroy, M.C.2    Sobala, A.3    Hay, R.4    Hutvagner, G.5
  • 31
    • 69949127421 scopus 로고    scopus 로고
    • Structural determinants of miRNAs for RISC loading and slicer-independent unwinding
    • Kawamata T, Seitz H, Tomari Y. 2009. Structural determinants of miRNAs for RISC loading and slicer-independent unwinding. Nat Struct Mol Biol 16: 953-960.
    • (2009) Nat Struct Mol Biol , vol.16 , pp. 953-960
    • Kawamata, T.1    Seitz, H.2    Tomari, Y.3
  • 33
    • 0142165224 scopus 로고    scopus 로고
    • Functional siRNAs and miRNAs exhibit strand bias
    • Khvorova A, Reynolds A, Jayasena SD. 2003. Functional siRNAs and miRNAs exhibit strand bias. Cell 115: 209-216.
    • (2003) Cell , vol.115 , pp. 209-216
    • Khvorova, A.1    Reynolds, A.2    Jayasena, S.D.3
  • 35
    • 79251485649 scopus 로고    scopus 로고
    • Modifications of small RNAs and their associated proteins
    • Kim YK, Heo I, Kim VN. 2010. Modifications of small RNAs and their associated proteins. Cell 143: 703-709.
    • (2010) Cell , vol.143 , pp. 703-709
    • Kim, Y.K.1    Heo, I.2    Kim, V.N.3
  • 36
    • 28344451166 scopus 로고    scopus 로고
    • Optimizing splinted ligation of highly structured small RNAs
    • Kurschat WC, Muller J, Wombacher R, Helm M. 2005. Optimizing splinted ligation of highly structured small RNAs. RNA 11: 1909-1914.
    • (2005) RNA , vol.11 , pp. 1909-1914
    • Kurschat, W.C.1    Muller, J.2    Wombacher, R.3    Helm, M.4
  • 38
    • 0141868916 scopus 로고    scopus 로고
    • R2D2, a bridge between the initiation and effector steps of the Drosophila RNAi pathway
    • Liu Q, Rand TA, Kalidas S, Du F, Kim HE, Smith DP, Wang X. 2003. R2D2, a bridge between the initiation and effector steps of the Drosophila RNAi pathway. Science 301: 1921-1925.
    • (2003) Science , vol.301 , pp. 1921-1925
    • Liu, Q.1    Rand, T.A.2    Kalidas, S.3    Du, F.4    Kim, H.E.5    Smith, D.P.6    Wang, X.7
  • 40
    • 22144478256 scopus 로고    scopus 로고
    • MicroRNA-dependent localization of targeted mRNAs to mammalian P-bodies
    • Liu J, Valencia-Sanchez MA, Hannon GJ, Parker R. 2005. MicroRNA-dependent localization of targeted mRNAs to mammalian P-bodies. Nat Cell Biol 7: 719-723.
    • (2005) Nat Cell Biol , vol.7 , pp. 719-723
    • Liu, J.1    Valencia-Sanchez, M.A.2    Hannon, G.J.3    Parker, R.4
  • 41
    • 56349133372 scopus 로고    scopus 로고
    • Pre-miRNA loop nucleotides control the distinct activities of mir-181a-1 and mir-181c in early T cell development
    • Liu G, Min H, Yue S, Chen CZ. 2008. Pre-miRNA loop nucleotides control the distinct activities of mir-181a-1 and mir-181c in early T cell development. PLoS ONE 3: e3592.
    • (2008) PLoS ONE , vol.3
    • Liu, G.1    Min, H.2    Yue, S.3    Chen, C.Z.4
  • 43
    • 29144431656 scopus 로고    scopus 로고
    • A human, ATP-independent, RISC assembly machine fueled by pre-miRNA
    • Maniataki E, Mourelatos Z. 2005. A human, ATP-independent, RISC assembly machine fueled by pre-miRNA. Genes Dev 19: 2979-2990.
    • (2005) Genes Dev , vol.19 , pp. 2979-2990
    • Maniataki, E.1    Mourelatos, Z.2
  • 46
  • 48
    • 55049119136 scopus 로고    scopus 로고
    • Post- transcriptional regulation of miRNAs harboring conserved terminal loops
    • Michlewski G, Guil S, Semple CA, Caceres JF. 2008. Post- transcriptional regulation of miRNAs harboring conserved terminal loops. Mol Cell 32: 383-393.
    • (2008) Mol Cell , vol.32 , pp. 383-393
    • Michlewski, G.1    Guil, S.2    Semple, C.A.3    Caceres, J.F.4
  • 49
    • 28444437427 scopus 로고    scopus 로고
    • Slicer function of Drosophila Argonautes and its involvement in RISC formation
    • Miyoshi K, Tsukumo H, Nagami T, Siomi H, Siomi MC. 2005. Slicer function of Drosophila Argonautes and its involvement in RISC formation. Genes Dev 19: 2837-2848.
    • (2005) Genes Dev , vol.19 , pp. 2837-2848
    • Miyoshi, K.1    Tsukumo, H.2    Nagami, T.3    Siomi, H.4    Siomi, M.C.5
  • 52
    • 84863675121 scopus 로고    scopus 로고
    • Diversity of animal small RNA pathways and their biological utility
    • Okamura K. 2012. Diversity of animal small RNA pathways and their biological utility. Wiley Interdiscip Rev RNA 3: 351-368.
    • (2012) Wiley Interdiscip Rev RNA , vol.3 , pp. 351-368
    • Okamura, K.1
  • 53
    • 3142729150 scopus 로고    scopus 로고
    • Distinct roles for Argonaute proteins in small RNA-directed RNA cleavage pathways
    • Okamura K, Ishizuka A, Siomi H, Siomi MC. 2004. Distinct roles for Argonaute proteins in small RNA-directed RNA cleavage pathways. Genes Dev 18: 1655-1666.
    • (2004) Genes Dev , vol.18 , pp. 1655-1666
    • Okamura, K.1    Ishizuka, A.2    Siomi, H.3    Siomi, M.C.4
  • 54
    • 34447107760 scopus 로고    scopus 로고
    • The mirtron pathway generates microRNA-class regulatory RNAs in Drosophila
    • Okamura K, Hagen JW, Duan H, Tyler DM, Lai EC. 2007. The mirtron pathway generates microRNA-class regulatory RNAs in Drosophila. Cell 130: 89-100.
    • (2007) Cell , vol.130 , pp. 89-100
    • Okamura, K.1    Hagen, J.W.2    Duan, H.3    Tyler, D.M.4    Lai, E.C.5
  • 55
    • 41649089309 scopus 로고    scopus 로고
    • The regulatory activity of microRNA* species has substantial influence on microRNA and 3' UTR evolution
    • Okamura K, Phillips MD, Tyler DM, Duan H, Chou YT, Lai EC. The regulatory activity of microRNA* species has substantial influence on microRNA and 3' UTR evolution. Nat Struct Mol Biol 15: 354-363.
    • Nat Struct Mol Biol , vol.15 , pp. 354-363
    • Okamura, K.1    Phillips, M.D.2    Tyler, D.M.3    Duan, H.4    Chou, Y.T.5    Lai, E.C.6
  • 56
    • 70449122099 scopus 로고    scopus 로고
    • Distinct mechanisms for microRNA strand selection by Drosophila Argonautes
    • Okamura K, Liu N, Lai EC. 2009. Distinct mechanisms for microRNA strand selection by Drosophila Argonautes. Mol Cell 36: 431-444.
    • (2009) Mol Cell , vol.36 , pp. 431-444
    • Okamura, K.1    Liu, N.2    Lai, E.C.3
  • 57
    • 79251558104 scopus 로고    scopus 로고
    • R2D2 organizes small regulatory RNA pathways in Drosophila
    • Okamura K, Robine N, Liu Y, Liu Q, Lai EC. 2011. R2D2 organizes small regulatory RNA pathways in Drosophila. Mol Cell Biol 31: 884-896.
    • (2011) Mol Cell Biol , vol.31 , pp. 884-896
    • Okamura, K.1    Robine, N.2    Liu, Y.3    Liu, Q.4    Lai, E.C.5
  • 58
    • 84857400300 scopus 로고    scopus 로고
    • Biological robustness and the role of microRNAs: A network perspective
    • Pelaez N, Carthew RW. 2012. Biological robustness and the role of microRNAs: A network perspective. Curr Top Dev Biol 99: 237-255.
    • (2012) Curr Top Dev Biol , vol.99 , pp. 237-255
    • Pelaez, N.1    Carthew, R.W.2
  • 60
    • 38149071979 scopus 로고    scopus 로고
    • Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
    • Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC. 2007. Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs. Genome Res 17: 1850-1864.
    • (2007) Genome Res , vol.17 , pp. 1850-1864
    • Ruby, J.G.1    Stark, A.2    Johnston, W.K.3    Kellis, M.4    Bartel, D.P.5    Lai, E.C.6
  • 61
    • 84860147226 scopus 로고    scopus 로고
    • Short non-coding RNA fragments accumulating in chloroplasts: Footprints of RNA binding proteins?
    • Ruwe H, Schmitz-Linneweber C. 2012. Short non-coding RNA fragments accumulating in chloroplasts: Footprints of RNA binding proteins? Nucleic Acids Res 40: 3106-3116.
    • (2012) Nucleic Acids Res , vol.40 , pp. 3106-3116
    • Ruwe, H.1    Schmitz-Linneweber, C.2
  • 62
    • 0036752955 scopus 로고    scopus 로고
    • Evidence that siRNAs function as guides, not primers, in the Drosophila and human RNAi pathways
    • Schwarz DS, Hutvagner G, Haley B, Zamore PD. 2002. Evidence that siRNAs function as guides, not primers, in the Drosophila and human RNAi pathways. Mol Cell 10: 537-548.
    • (2002) Mol Cell , vol.10 , pp. 537-548
    • Schwarz, D.S.1    Hutvagner, G.2    Haley, B.3    Zamore, P.D.4
  • 64
    • 38349081145 scopus 로고    scopus 로고
    • Argonaute loading improves the 5' precision of both MicroRNAs and their miRNA strands in flies
    • Seitz H, Ghildiyal M, Zamore PD. 2008. Argonaute loading improves the 5' precision of both MicroRNAs and their miRNA strands in flies. Curr Biol 18: 147-151.
    • (2008) Curr Biol , vol.18 , pp. 147-151
    • Seitz, H.1    Ghildiyal, M.2    Zamore, P.D.3
  • 66
    • 34447642555 scopus 로고    scopus 로고
    • Sorting of Drosophila small silencing RNAs
    • Tomari Y, Du T, Zamore PD. 2007. Sorting of Drosophila small silencing RNAs. Cell 130: 299-308.
    • (2007) Cell , vol.130 , pp. 299-308
    • Tomari, Y.1    Du, T.2    Zamore, P.D.3
  • 67
    • 77957812082 scopus 로고    scopus 로고
    • The potential functions of primary microRNAs in target recognition and repression
    • Trujillo RD, Yue SB, Tang Y, O'Gorman WE, Chen CZ. 2010. The potential functions of primary microRNAs in target recognition and repression. EMBO J 29: 3272-3285.
    • (2010) EMBO J , vol.29 , pp. 3272-3285
    • Trujillo, R.D.1    Yue, S.B.2    Tang, Y.3    O'Gorman, W.E.4    Chen, C.Z.5
  • 69
    • 84856009181 scopus 로고    scopus 로고
    • Common and distinct patterns of terminal modifications to mirtrons and canonical microRNAs
    • Westholm JO, Ladewig E, Okamura K, Robine N, Lai EC. 2012. Common and distinct patterns of terminal modifications to mirtrons and canonical microRNAs. RNA 18: 177-192.
    • (2012) RNA , vol.18 , pp. 177-192
    • Westholm, J.O.1    Ladewig, E.2    Okamura, K.3    Robine, N.4    Lai, E.C.5
  • 72
    • 80052996141 scopus 로고    scopus 로고
    • Alternative miRNA biogenesis pathways and the interpretation of core miRNA pathway mutants
    • Yang JS, Lai EC. 2011. Alternative miRNA biogenesis pathways and the interpretation of core miRNA pathway mutants. Mol Cell 43: 892-903.
    • (2011) Mol Cell , vol.43 , pp. 892-903
    • Yang, J.S.1    Lai, E.C.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.