메뉴 건너뛰기




Volumn , Issue , 2013, Pages 403-427

Proteomics and metabolomics

Author keywords

Database; Mass spectrometry; Metabolic profiling; Metabolite annotation; Post translational modification; Quantitative trait loci (QTL); Shotgun proteomics

Indexed keywords


EID: 84891502169     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1201/b14578     Document Type: Chapter
Times cited : (2)

References (108)
  • 1
    • 0037435030 scopus 로고    scopus 로고
    • Mass spectrometry-based proteomics
    • Aebersold R, Mann M (2003) Mass spectrometry-based proteomics. Nature 422: 198-207.
    • (2003) Nature , vol.422 , pp. 198-207
    • Aebersold, R.1    Mann, M.2
  • 2
    • 34250630549 scopus 로고    scopus 로고
    • A proteomic screen and identification of waterlogging-regulated proteins in Tomato roots
    • Ahsan N, Lee D-G, Lee S-H, Lee K-W, Bahk J, Lee B-H (2007a) A proteomic screen and identification of waterlogging-regulated proteins in Tomato roots. Plant Soil 295: 37-51.
    • (2007) Plant Soil , vol.295 , pp. 37-51
    • Ahsan, N.1    Lee, D.-G.2    Lee, S.-H.3    Lee, K.-W.4    Bahk, J.5    Lee, B.-H.6
  • 4
    • 33344476119 scopus 로고    scopus 로고
    • Transcriptome and selected metabolite analyses reveal multiple points of ethylene control during Tomato fruit development
    • Alba R, Payton P, Fei Z, McQuinn R, Debbie P, Martin GB, Tanksley SD, Giovannoni JJ (2005) Transcriptome and selected metabolite analyses reveal multiple points of ethylene control during Tomato fruit development. Plant Cell 17: 2954-2965.
    • (2005) Plant Cell , vol.17 , pp. 2954-2965
    • Alba, R.1    Payton, P.2    Fei, Z.3    McQuinn, R.4    Debbie, P.5    Martin, G.B.6    Tanksley, S.D.7    Giovannoni, J.J.8
  • 5
    • 0030479076 scopus 로고    scopus 로고
    • High-resolution mapping and isolation of a yeast artificial chromosome contig containing fw2.2: A major fruit weight quantitative trait locus in Tomato
    • Alpert KB, Tanksley SD (1996) High-resolution mapping and isolation of a yeast artificial chromosome contig containing fw2.2: a major fruit weight quantitative trait locus in Tomato. Proc Natl Acad Sci USA 93: 15503-15507.
    • (1996) Proc Natl Acad Sci USA , vol.93 , pp. 15503-15507
    • Alpert, K.B.1    Tanksley, S.D.2
  • 8
    • 0022541790 scopus 로고
    • Isolation of phosphoproteins by immobilized metal (Fe3+) affinity chromatography
    • Andersson L, Porath J (1986) Isolation of phosphoproteins by immobilized metal (Fe3+) affinity chromatography. Anal Biochem 154: 250-254.
    • (1986) Anal Biochem , vol.154 , pp. 250-254
    • Andersson, L.1    Porath, J.2
  • 10
    • 0034101998 scopus 로고    scopus 로고
    • Mass spectrometrically detected directly coupled high performance liquid chromatography/nuclear magnetic resonance spectroscopy/mass spectrometry for the identification of xenobiotic metabolites in maize plants
    • Bailey NJ, Stanley PD, Hadfield ST, Lindon JC, Nicholson JK (2000) Mass spectrometrically detected directly coupled high performance liquid chromatography/nuclear magnetic resonance spectroscopy/mass spectrometry for the identification of xenobiotic metabolites in maize plants. Rapid Commun Mass Spectrom 14: 679-684.
    • (2000) Rapid Commun Mass Spectrom , vol.14 , pp. 679-684
    • Bailey, N.J.1    Stanley, P.D.2    Hadfield, S.T.3    Lindon, J.C.4    Nicholson, J.K.5
  • 14
    • 34247868968 scopus 로고    scopus 로고
    • Differential display and protein quantification
    • Baginsky S, Fernie A Bïrkäuser, Basel, Switzerland
    • Brunner E, Gerrits B, Scott M, Roschitzki B (2007) Differential display and protein quantification. In: Baginsky S, Fernie A (eds) Plant Systems Biology, vol 97. Bïrkäuser, Basel, Switzerland, pp 115-140.
    • (2007) Plant Systems Biology , vol.97 , pp. 115-140
    • Brunner, E.1    Gerrits, B.2    Scott, M.3    Roschitzki, B.4
  • 15
    • 33144484350 scopus 로고    scopus 로고
    • Determination and characterization of site-specific N-glycosylation using MALDI-Qq-TOF tandem mass spectrometry: Case study with a plant protease
    • Bykova NV, Rampitsch C, Krokhin O, Standing KG, Ens W (2006) Determination and characterization of site-specific N-glycosylation using MALDI-Qq-TOF tandem mass spectrometry: case study with a plant protease. Anal Chem 78: 1093-1103.
    • (2006) Anal Chem , vol.78 , pp. 1093-1103
    • Bykova, N.V.1    Rampitsch, C.2    Krokhin, O.3    Standing, K.G.4    Ens, W.5
  • 17
    • 22044438390 scopus 로고    scopus 로고
    • Proteomic approach to blossom-end rot in Tomato fruits (Lycopersicon esculentum M.): Antioxidant enzymes and the pentose phosphate pathway
    • Casado-Vela J, Selles S, Bru Martinez R (2005) Proteomic approach to blossom-end rot in Tomato fruits (Lycopersicon esculentum M.): antioxidant enzymes and the pentose phosphate pathway. Proteomics 5: 2488-2496.
    • (2005) Proteomics , vol.5 , pp. 2488-2496
    • Casado-Vela, J.1    Selles, S.2    Bru Martinez, R.3
  • 18
    • 34447646266 scopus 로고    scopus 로고
    • Both additivity and epistasis control the genetic variation for fruit quality traits in Tomato
    • Causse M, Chaib J, Lecomte L, Buret M, Hospital F (2007) Both additivity and epistasis control the genetic variation for fruit quality traits in Tomato. Theor Appl Genet 115: 429-442.
    • (2007) Theor Appl Genet , vol.115 , pp. 429-442
    • Causse, M.1    Chaib, J.2    Lecomte, L.3    Buret, M.4    Hospital, F.5
  • 19
    • 33750588336 scopus 로고    scopus 로고
    • Advances in plant proteomics
    • Chen S, Harmon AC (2006) Advances in plant proteomics. Proteomics 6: 5504-5516.
    • (2006) Proteomics , vol.6 , pp. 5504-5516
    • Chen, S.1    Harmon, A.C.2
  • 20
    • 35649026115 scopus 로고    scopus 로고
    • Visible and fluorescent staining of two-dimensional gels
    • Thiellement H, Zivy M, Damerval C, Méchin V Humana Press, Totowa, NJ, USA
    • Chevalier F, Rofidal V, Rossignol M (2007) Visible and fluorescent staining of two-dimensional gels. In: Thiellement H, Zivy M, Damerval C, Méchin V (eds) Plant Proteomics: methods and protocols, vol 355. Humana Press, Totowa, NJ, USA, pp 145-156.
    • (2007) Plant Proteomics: Methods and protocols , vol.355 , pp. 145-156
    • Chevalier, F.1    Rofidal, V.2    Rossignol, M.3
  • 22
    • 2142734905 scopus 로고    scopus 로고
    • Mapping, genetic effects, and epistatic interaction of two bacterial canker resistance QTLs from Lycopersicon hirsutum
    • Coaker GL, Francis DM (2004) Mapping, genetic effects, and epistatic interaction of two bacterial canker resistance QTLs from Lycopersicon hirsutum. Theor Appl Genet 108: 1047-1055.
    • (2004) Theor Appl Genet , vol.108 , pp. 1047-1055
    • Coaker, G.L.1    Francis, D.M.2
  • 23
    • 4143099179 scopus 로고    scopus 로고
    • Proteomic analysis of resistance mediated by Rcm 2.0 and Rcm 5.1, two loci controlling resistance to bacterial canker of Tomato
    • Coaker GL, Willard B, Kinter M, Stockinger EJ, Francis DM (2004) Proteomic analysis of resistance mediated by Rcm 2.0 and Rcm 5.1, two loci controlling resistance to bacterial canker of Tomato. Mol Plant Microbe Interact 17: 1019-1028.
    • (2004) Mol Plant Microbe Interact , vol.17 , pp. 1019-1028
    • Coaker, G.L.1    Willard, B.2    Kinter, M.3    Stockinger, E.J.4    Francis, D.M.5
  • 24
    • 34548392335 scopus 로고    scopus 로고
    • Analysis of protein phosphorylation on a proteomescale
    • Collins MO, Yu L, Choudhary JS (2007) Analysis of protein phosphorylation on a proteomescale. Proteomics 7: 2751-2768.
    • (2007) Proteomics , vol.7 , pp. 2751-2768
    • Collins, M.O.1    Yu, L.2    Choudhary, J.S.3
  • 25
    • 37249014081 scopus 로고    scopus 로고
    • The biological impact of mass-spectrometry-based proteomics
    • Cravatt BF, Simon GM, Yates JR (2007) The biological impact of mass-spectrometry-based proteomics. Nature 450: 991-1000.
    • (2007) Nature , vol.450 , pp. 991-1000
    • Cravatt, B.F.1    Simon, G.M.2    Yates, J.R.3
  • 26
    • 12844278044 scopus 로고    scopus 로고
    • The oxidative environment and protein damage
    • Davies MJ 2005. The oxidative environment and protein damage. Biochim Biophys Acta 1703: 93-109.
    • (2005) Biochim Biophys Acta , vol.1703 , pp. 93-109
    • Davies, M.J.1
  • 28
    • 34249770724 scopus 로고
    • A genomic library of Lycopersicon pennellii in Lycopersicon esculentum -a tool for fine mapping of genes
    • Eshed Y, Zamir D (1994) A genomic library of Lycopersicon pennellii in Lycopersicon esculentum -a tool for fine mapping of genes. Euphytica 79: 175-179.
    • (1994) Euphytica , vol.79 , pp. 175-179
    • Eshed, Y.1    Zamir, D.2
  • 29
    • 0028846653 scopus 로고
    • An introgression line population of Lycopersicon pennellii in the cultivated Tomato enables the identification and fine mapping of yield-associated QTL
    • Eshed Y, Zamir D (1995) An introgression line population of Lycopersicon pennellii in the cultivated Tomato enables the identification and fine mapping of yield-associated QTL. Genetics 141: 1147-1162.
    • (1995) Genetics , vol.141 , pp. 1147-1162
    • Eshed, Y.1    Zamir, D.2
  • 33
    • 36349007155 scopus 로고    scopus 로고
    • Phenol extraction of proteins for proteomic studies of recalcitrant plant tissues
    • Thiellement H, Zivy M, Damerval C, Méchin V Humana Press, Totowa, NJ, USA
    • Faurobert M, Pelpoir E, Chaib J (2007) Phenol extraction of proteins for proteomic studies of recalcitrant plant tissues. In: Thiellement H, Zivy M, Damerval C, Méchin V (eds) Plant Proteomics: methods and protocols, vol 355. Humana Press, Totowa, NJ, USA, pp 9-14.
    • (2007) Plant Proteomics: Methods and protocols , vol.355 , pp. 9-14
    • Faurobert, M.1    Pelpoir, E.2    Chaib, J.3
  • 34
    • 33644876030 scopus 로고    scopus 로고
    • Tomato Expression Database (TED): A suite of data presentation and analysis tools
    • Fei Z, Tang X, Alba R, Giovannoni J (2006) Tomato Expression Database (TED): a suite of data presentation and analysis tools. Nucl Acids Res 34: D766-770.
    • (2006) Nucl Acids Res , vol.34 , pp. D766-D770
    • Fei, Z.1    Tang, X.2    Alba, R.3    Giovannoni, J.4
  • 36
    • 26444491700 scopus 로고    scopus 로고
    • Setup and annotation of metabolomic experiments by integrating biological and mass spectrometric metadata
    • Ludascher B, Raschid L Springer-Verlag, Berlin, Germany
    • Fiehn O, Wohlgemuth G, Scholz M (2005) Setup and annotation of metabolomic experiments by integrating biological and mass spectrometric metadata. In: Ludascher B, Raschid L (eds) Data Integration in Life Sciences, Lecture Notes in Computer Science, vol 3615. Springer-Verlag, Berlin, Germany, pp 224-239.
    • (2005) Data Integration in Life Sciences, Lecture Notes in Computer Science , vol.3615 , pp. 224-239
    • Fiehn, O.1    Wohlgemuth, G.2    Scholz, M.3
  • 37
    • 37249034649 scopus 로고    scopus 로고
    • Manipulation of phytoene levels in Tomato fruit: Effects on isoprenoids, plastids, and intermediary metabolism
    • Fraser PD, Enfissi EM, Halket JM, Truesdale MR, Yu D, Gerrish C, Bramley PM (2007) Manipulation of phytoene levels in Tomato fruit: effects on isoprenoids, plastids, and intermediary metabolism. Plant Cell 19: 3194-3211.
    • (2007) Plant Cell , vol.19 , pp. 3194-3211
    • Fraser, P.D.1    Enfissi, E.M.2    Halket, J.M.3    Truesdale, M.R.4    Yu, D.5    Gerrish, C.6    Bramley, P.M.7
  • 39
    • 0034712852 scopus 로고    scopus 로고
    • A recombination hotspot delimits a wild-species quantitative trait locus for Tomato sugar content to 484 bp within an invertase gene
    • Fridman E, Pleban T, Zamir D (2000) A recombination hotspot delimits a wild-species quantitative trait locus for Tomato sugar content to 484 bp within an invertase gene. Proc Natl Acad Sci USA 97: 4718-4723.
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 4718-4723
    • Fridman, E.1    Pleban, T.2    Zamir, D.3
  • 43
    • 14744280370 scopus 로고    scopus 로고
    • A Robot-based platform to measure multiple enzyme activities in Arabidopsis using a set of cycling assays: Comparison of changes of enzyme activities and transcript levels during diurnal cycles and in prolonged darkness
    • Gibon Y, Blaesing OE, Hannemann J, Carillo P, Hohne M, Hendriks JH, Palacios N, Cross J, Selbig J, Stitt M (2004) A Robot-based platform to measure multiple enzyme activities in Arabidopsis using a set of cycling assays: comparison of changes of enzyme activities and transcript levels during diurnal cycles and in prolonged darkness. Plant Cell 16: 3304-3325.
    • (2004) Plant Cell , vol.16 , pp. 3304-3325
    • Gibon, Y.1    Blaesing, O.E.2    Hannemann, J.3    Carillo, P.4    Hohne, M.5    Hendriks, J.H.6    Palacios, N.7    Cross, J.8    Selbig, J.9    Stitt, M.10
  • 45
    • 3242741850 scopus 로고    scopus 로고
    • Design of experiments: An efficient strategy to identify factors influencing extraction and derivatization of Arabidopsis thaliana samples in metabolomic studies with gas chromatography/mass spectrometry
    • Gullberg J, Jonsson P, Nordstrom A, Sjostrom M, Moritz T (2004) Design of experiments: an efficient strategy to identify factors influencing extraction and derivatization of Arabidopsis thaliana samples in metabolomic studies with gas chromatography/mass spectrometry. Anal Biochem 331: 283-295.
    • (2004) Anal Biochem , vol.331 , pp. 283-295
    • Gullberg, J.1    Jonsson, P.2    Nordstrom, A.3    Sjostrom, M.4    Moritz, T.5
  • 46
    • 33645070537 scopus 로고    scopus 로고
    • Plant metabolomics: From holistic hope, to hype, to hot topic
    • Hall RD (2006) Plant metabolomics: from holistic hope, to hype, to hot topic. New Phytol 169: 453-468.
    • (2006) New Phytol , vol.169 , pp. 453-468
    • Hall, R.D.1
  • 47
    • 35549008883 scopus 로고    scopus 로고
    • Proteomic analysis of shade-avoidance response in Tomato leaves
    • Hattrup E, Neilson KA, Breci L, Haynes PA (2007) Proteomic analysis of shade-avoidance response in Tomato leaves. J Agric Food Chem 55: 8310-8318.
    • (2007) J Agric Food Chem , vol.55 , pp. 8310-8318
    • Hattrup, E.1    Neilson, K.A.2    Breci, L.3    Haynes, P.A.4
  • 48
    • 23944472666 scopus 로고    scopus 로고
    • Comprehensive label-free method for the relative quantification of proteins from biological samples
    • Higgs RE, Knierman MD, Gelfanova V, Butler JP, Hale JE (2005) Comprehensive label-free method for the relative quantification of proteins from biological samples. J Proteome Res 4: 1442-1450.
    • (2005) J Proteome Res , vol.4 , pp. 1442-1450
    • Higgs, R.E.1    Knierman, M.D.2    Gelfanova, V.3    Butler, J.P.4    Hale, J.E.5
  • 51
    • 0034039551 scopus 로고    scopus 로고
    • Effect of heat stress on Tomato fruit protein expression
    • Iwahashi Y, Hosoda H (2000) Effect of heat stress on Tomato fruit protein expression. Electrophoresis 21: 1766-1771.
    • (2000) Electrophoresis , vol.21 , pp. 1766-1771
    • Iwahashi, Y.1    Hosoda, H.2
  • 52
    • 1042275615 scopus 로고    scopus 로고
    • Modification-specific proteomics: Characterization of post-translational modifications by mass spectrometry
    • Jensen ON (2004) Modification-specific proteomics: characterization of post-translational modifications by mass spectrometry. Curr Opin Chem Biol 8: 33-41.
    • (2004) Curr Opin Chem Biol , vol.8 , pp. 33-41
    • Jensen, O.N.1
  • 53
    • 34547704068 scopus 로고    scopus 로고
    • Practical aspects of uniform stable isotope labeling of higher plants for heteronuclear NMR-based metabolomics
    • Kikuchi J, Hirayama T (2007) Practical aspects of uniform stable isotope labeling of higher plants for heteronuclear NMR-based metabolomics. Methods Mol Biol 358: 273-286.
    • (2007) Methods Mol Biol , vol.358 , pp. 273-286
    • Kikuchi, J.1    Hirayama, T.2
  • 55
    • 13244264923 scopus 로고    scopus 로고
    • Metabolite fingerprinting and profiling in plants using NMR
    • Krishnan P, Kruger NJ, Ratcliffe RG (2005) Metabolite fingerprinting and profiling in plants using NMR. J Exp Bot 56: 255-265.
    • (2005) J Exp Bot , vol.56 , pp. 255-265
    • Krishnan, P.1    Kruger, N.J.2    Ratcliffe, R.G.3
  • 56
    • 0037462046 scopus 로고    scopus 로고
    • Metabolite profiling of Tomato (Lycopersicon esculentum) using 1H NMR spectroscopy as a tool to detect potential unintended effects following a genetic modification
    • Le Gall G, Colquhoun IJ, Davis AL, Collins GJ, Verhoeyen ME (2003) Metabolite profiling of Tomato (Lycopersicon esculentum) using 1H NMR spectroscopy as a tool to detect potential unintended effects following a genetic modification. J Agri Food Chem 51: 2447-2456.
    • (2003) J Agri Food Chem , vol.51 , pp. 2447-2456
    • Le Gall, G.1    Colquhoun, I.J.2    Davis, A.L.3    Collins, G.J.4    Verhoeyen, M.E.5
  • 58
    • 0034923505 scopus 로고    scopus 로고
    • Analysis of proteins and proteomes by mass spectrometry
    • Mann M, Hendrickson RC, Pandey A (2001) Analysis of proteins and proteomes by mass spectrometry. Annu Rev Biochem 70: 437-473.
    • (2001) Annu Rev Biochem , vol.70 , pp. 437-473
    • Mann, M.1    Hendrickson, R.C.2    Pandey, A.3
  • 63
    • 0033079225 scopus 로고    scopus 로고
    • Phenotype of the Tomato high pigment-2 mutant is caused by a mutation in the Tomato homolog of DEETIOLATED1
    • Mustilli AC, Fenzi F, Ciliento R, Alfano F, Bowler C (1999) Phenotype of the Tomato high pigment-2 mutant is caused by a mutation in the Tomato homolog of DEETIOLATED1. Plant Cell 11: 145-157.
    • (1999) Plant Cell , vol.11 , pp. 145-157
    • Mustilli, A.C.1    Fenzi, F.2    Ciliento, R.3    Alfano, F.4    Bowler, C.5
  • 64
    • 8544275813 scopus 로고    scopus 로고
    • Mitochondrial respiratory chain complex patterns from Acanthamoeba castellanii and Lycopersicon esculentum: Comparative analysis by BN-PAGE and evidence of protein-protein interaction between alternative oxidase and complex III
    • Navet R, Jarmuszkiewicz W, Douette P, Sluse-Goffart CM, Sluse FE (2004) Mitochondrial respiratory chain complex patterns from Acanthamoeba castellanii and Lycopersicon esculentum: comparative analysis by BN-PAGE and evidence of protein-protein interaction between alternative oxidase and complex III. J Bioenerg Biomembr 36: 471-479.
    • (2004) J Bioenerg Biomembr , vol.36 , pp. 471-479
    • Navet, R.1    Jarmuszkiewicz, W.2    Douette, P.3    Sluse-Goffart, C.M.4    Sluse, F.E.5
  • 69
    • 0034218717 scopus 로고    scopus 로고
    • Technical advance: Simultaneous analysis of metabolites in potato tuber by gas chromatography-mass spectrometry
    • Roessner U, Wagner C, Kopka J, Trethewey RN, Willmitzer L (2000) Technical advance: simultaneous analysis of metabolites in potato tuber by gas chromatography-mass spectrometry. Plant J 23: 131-142.
    • (2000) Plant J , vol.23 , pp. 131-142
    • Roessner, U.1    Wagner, C.2    Kopka, J.3    Trethewey, R.N.4    Willmitzer, L.5
  • 70
    • 0034718562 scopus 로고    scopus 로고
    • An alternative pathway to betacarotene formation in plant chromoplasts discovered by map-based cloning of beta and old-gold color mutations in Tomato
    • Ronen G, Carmel-Goren L, Zamir D, Hirschberg J (2000) An alternative pathway to betacarotene formation in plant chromoplasts discovered by map-based cloning of beta and old-gold color mutations in Tomato. Proc Natl Acad Sci USA 97: 11102-11107.
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 11102-11107
    • Ronen, G.1    Carmel-Goren, L.2    Zamir, D.3    Hirschberg, J.4
  • 71
    • 4544265213 scopus 로고    scopus 로고
    • Tackling the plant proteome: Practical approaches, hurdles and experimental tools
    • Rose JKC, Bashir S, Giovannoni JJ, Jahn MM, Saravanan RS (2004) Tackling the plant proteome: practical approaches, hurdles and experimental tools. Plant J 39: 715-733.
    • (2004) Plant J , vol.39 , pp. 715-733
    • Rose, J.K.C.1    Bashir, S.2    Giovannoni, J.J.3    Jahn, M.M.4    Saravanan, R.S.5
  • 73
    • 5144227035 scopus 로고    scopus 로고
    • Simultaneous determination of the main metabolites in rice leaves using capillary electrophoresis mass spectrometry and capillary electrophoresis diode array detection
    • Sato S, Soga T, Nishioka T, Tomita M (2004) Simultaneous determination of the main metabolites in rice leaves using capillary electrophoresis mass spectrometry and capillary electrophoresis diode array detection. Plant J 40: 151-163.
    • (2004) Plant J , vol.40 , pp. 151-163
    • Sato, S.1    Soga, T.2    Nishioka, T.3    Tomita, M.4
  • 74
    • 0026409298 scopus 로고
    • Blue native electrophoresis for isolation of membrane protein complexes in enzymatically active form
    • Schagger H, von Jagow G (1991) Blue native electrophoresis for isolation of membrane protein complexes in enzymatically active form. Anal Biochem 199: 223-231.
    • (1991) Anal Biochem , vol.199 , pp. 223-231
    • Schagger, H.1    von Jagow, G.2
  • 77
    • 13244297050 scopus 로고    scopus 로고
    • Metabolic profiling of leaves and fruit of wild species Tomato: A survey of the Solanum lycopersicum complex
    • Schauer N, Zamir D, Fernie AR (2005) Metabolic profiling of leaves and fruit of wild species Tomato: a survey of the Solanum lycopersicum complex. J Exp Bot 56: 297-307.
    • (2005) J Exp Bot , vol.56 , pp. 297-307
    • Schauer, N.1    Zamir, D.2    Fernie, A.R.3
  • 80
    • 34547660375 scopus 로고    scopus 로고
    • Towards dynamic metabolic network measurements by multidimensional NMR-based fluxomics
    • Sekiyama Y, Kikuchi J (2007) Towards dynamic metabolic network measurements by multidimensional NMR-based fluxomics. Phytochemistry 68: 2320-2329.
    • (2007) Phytochemistry , vol.68 , pp. 2320-2329
    • Sekiyama, Y.1    Kikuchi, J.2
  • 82
    • 33748532851 scopus 로고    scopus 로고
    • Detection of redox-based modification in two-dimensional electrophoresis proteomic separations
    • Sheehan D (2006) Detection of redox-based modification in two-dimensional electrophoresis proteomic separations. Biochem Biophys Res Commun 349: 455-462.
    • (2006) Biochem Biophys Res Commun , vol.349 , pp. 455-462
    • Sheehan, D.1
  • 83
    • 0035477025 scopus 로고    scopus 로고
    • Optimization of the isotope-coded affinity tag-labeling procedure for quantitative proteome analysis
    • Smolka MB, Zhou H, Purkayastha S, Aebersold R (2001) Optimization of the isotope-coded affinity tag-labeling procedure for quantitative proteome analysis. Anal Biochem 297: 25-31.
    • (2001) Anal Biochem , vol.297 , pp. 25-31
    • Smolka, M.B.1    Zhou, H.2    Purkayastha, S.3    Aebersold, R.4
  • 84
    • 4444335470 scopus 로고    scopus 로고
    • The ABC’s (and XYZ’s) of peptide sequencing
    • Steen H, Mann M (2004) The ABC’s (and XYZ’s) of peptide sequencing. Nat Rev Mol Cell Biol 5: 699-711.
    • (2004) Nat Rev Mol Cell Biol , vol.5 , pp. 699-711
    • Steen, H.1    Mann, M.2
  • 90
    • 0346458625 scopus 로고    scopus 로고
    • The Arabidopsis LUT1 locus encodes a member of the cytochrome p450 family that is required for carotenoid epsilon-ring hydroxylation activity
    • Tian L, Musetti V, Kim J, Magallanes-Lundback M, DellaPenna D (2004) The Arabidopsis LUT1 locus encodes a member of the cytochrome p450 family that is required for carotenoid epsilon-ring hydroxylation activity. Proc Natl Acad Sci USA 101: 402-407.
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 402-407
    • Tian, L.1    Musetti, V.2    Kim, J.3    Magallanes-Lundback, M.4    DellaPenna, D.5
  • 94
    • 13244275339 scopus 로고    scopus 로고
    • Metabolic profiling reveals altered nitrogen nutrient regimes have diverse effects on the metabolism of hydroponically-grown Tomato (Solanum lycopersicum) plants
    • Urbanczyk-Wochniak E, Fernie AR (2005) Metabolic profiling reveals altered nitrogen nutrient regimes have diverse effects on the metabolism of hydroponically-grown Tomato (Solanum lycopersicum) plants. J Exp Bot 56: 309-321.
    • (2005) J Exp Bot , vol.56 , pp. 309-321
    • Urbanczyk-Wochniak, E.1    Fernie, A.R.2
  • 97
    • 0037371977 scopus 로고    scopus 로고
    • Assessment of 1H NMR spectroscopy and multivariate analysis as a technique for metabolite fingerprinting of Arabidopsis thaliana
    • Ward JL, Harris C, Lewis J, Beale MH (2003) Assessment of 1H NMR spectroscopy and multivariate analysis as a technique for metabolite fingerprinting of Arabidopsis thaliana. Phytochemistry 62: 949-957.
    • (2003) Phytochemistry , vol.62 , pp. 949-957
    • Ward, J.L.1    Harris, C.2    Lewis, J.3    Beale, M.H.4
  • 98
    • 38149106625 scopus 로고    scopus 로고
    • Integration of metabolomics and proteomics in molecular plant physiology-coping with the complexity by data-dimensionality reduction
    • Weckwerth W (2008) Integration of metabolomics and proteomics in molecular plant physiology-coping with the complexity by data-dimensionality reduction. Physiol Plant 132: 176-189.
    • (2008) Physiol Plant , vol.132 , pp. 176-189
    • Weckwerth, W.1
  • 99
    • 2442647715 scopus 로고    scopus 로고
    • Differential metabolic networks unravel the effects of silent plant phenotypes
    • Weckwerth W, Loureiro ME, Wenzel K, Fiehn O (2004) Differential metabolic networks unravel the effects of silent plant phenotypes. Proc Natl Acad Sci USA 101: 7809-7814.
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 7809-7814
    • Weckwerth, W.1    Loureiro, M.E.2    Wenzel, K.3    Fiehn, O.4
  • 100
    • 6044226889 scopus 로고    scopus 로고
    • Differential mass spectrometry: A labelfree LC-MS method for finding significant differences in complex peptide and protein mixtures
    • Wiener MC, Sachs JR, Deyanova EG, Yates NA (2004) Differential mass spectrometry: a labelfree LC-MS method for finding significant differences in complex peptide and protein mixtures. Anal Chem 76: 6085-6096.
    • (2004) Anal Chem , vol.76 , pp. 6085-6096
    • Wiener, M.C.1    Sachs, J.R.2    Deyanova, E.G.3    Yates, N.A.4
  • 101
    • 52649132380 scopus 로고    scopus 로고
    • Integration of metabolomic and proteomic phenotypes-Analysis of data-covariance dissects starch and RFO metabolism from low- and high-temperature compensation response in Arabidopsis thaliana
    • Wienkoop S, Morgenthal K, Wolschin F, Scholz M, Selbig J, Weckwerth W (2008) Integration of metabolomic and proteomic phenotypes-Analysis of data-covariance dissects starch and RFO metabolism from low- and high-temperature compensation response in Arabidopsis thaliana. Mol Cell Proteom 7: 1725-1736.
    • (2008) Mol Cell Proteom , vol.7 , pp. 1725-1736
    • Wienkoop, S.1    Morgenthal, K.2    Wolschin, F.3    Scholz, M.4    Selbig, J.5    Weckwerth, W.6
  • 102
    • 33646251130 scopus 로고    scopus 로고
    • Relative and absolute quantitative shotgun proteomics: Targeting low-abundance proteins in Arabidopsis thaliana
    • Wienkoop S, Weckwerth W (2006) Relative and absolute quantitative shotgun proteomics: targeting low-abundance proteins in Arabidopsis thaliana. J Exp Bot 57: 1529-1535.
    • (2006) J Exp Bot , vol.57 , pp. 1529-1535
    • Wienkoop, S.1    Weckwerth, W.2
  • 105
    • 0042232498 scopus 로고    scopus 로고
    • MALDIQq- TOF-MS and transient gene expression analysis indicated co-enhancement of (beta)- 1,3-glucanase and endochitinase by tMEK2 and the involvement of divergent pathways
    • Xing,T, RampitschC, Miki BL, Mauthe W, Stebbing J-A, Malik K, Jordan M (2003) MALDIQq- TOF-MS and transient gene expression analysis indicated co-enhancement of (beta)- 1,3-glucanase and endochitinase by tMEK2 and the involvement of divergent pathways. Physiol Mol Plant Pathol 62: 209-217.
    • (2003) Physiol Mol Plant Pathol , vol.62 , pp. 209-217
    • Xing, T.1    Rampitsch, C.2    Miki, B.L.3    Mauthe, W.4    Stebbing, J.-A.5    Malik, K.6    Jordan, M.7
  • 108
    • 39049191688 scopus 로고    scopus 로고
    • Quantitative analysis of 2D gels
    • Thiellement H, Zivy M, Damerval C, Méchin V Humana Press, Totowa, NJ, USA
    • Zivy M (2007) Quantitative analysis of 2D gels. In: Thiellement H, Zivy M, Damerval C, Méchin V (eds) Plant Proteomics: methods and protocols, vol 355. Humana Press, Totowa, NJ, USA, pp 175-194.
    • (2007) Plant Proteomics: Methods and protocols , vol.355 , pp. 175-194
    • Zivy, M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.