Metabolic profiling of leaves and fruit of wild species tomato: A survey of the Solanum lycopersicum complex

Journal of Experimental Botany

Volumn 56, Issue 410, 2005, Pages 297-307

  Schauer, Nicolas ^a   Zamir, Dani ^b   Fernie, Alisdair R ^a  

^a MAX PLANCK INSTITUTE OF MOLECULAR PLANT PHYSIOLOGY   (Germany)

^b HEBREW UNIVERSITY OF JERUSALEM   (Israel)

Author keywords

Metabolic engineering; Metabolic profiling; Plant breeding; Solanum lycopersicum; Wild species tomato

Indexed keywords

CROPS; CULTIVATION; METABOLISM; STRESSES;

ABIOTIC STRESSES; SOLANUM LYCOPERSICUM; STRESS RESPONSES;

FRUITS;

CHEMISTRY; CONFERENCE PAPER; FRUIT; GENETICS; MASS FRAGMENTOGRAPHY; METABOLISM; PHENOTYPE; PLANT LEAF; SPECIES DIFFERENCE; TOMATO;

FRUIT; GAS CHROMATOGRAPHY-MASS SPECTROMETRY; LYCOPERSICON ESCULENTUM; PHENOTYPE; PLANT LEAVES; SPECIES SPECIFICITY;

CULTIVATION; FARM CROPS; FRUITS; METABOLISM; STRESSES;

LYCOPERSICON; LYCOPERSICON ESCULENTUM; LYCOPERSICON PARVIFLORUM; LYCOPERSICON PENNELLII; LYCOPERSICON PIMPINELLIFOLIUM; SOLANUM;

EID: 13244297050     PISSN: 00220957     EISSN: None     Source Type: Journal    
DOI: 10.1093/jxb/eri057     Document Type: Conference Paper

References (48)

1. Bovy A, de Vos R, Kemper M, et al. 2002. High-flavonol tomatoes resulting from the heterologous expression of the maize transcription factor genes LC and C1. The Plant Cell 14, 2509-2526.
2. Brugiere N, Dubois F, Limami AM, Lelandais M, Roux Y, Sangwan RS, Hirel B. 1999. Glutamine synthetase in the phloem plays a major role in controlling proline production. The Plant Cell 11, 1995-2011.
3. Carrari F, Nunes-Nesi A, Gibon Y, Lytovchenko A, Ehlers Loureiro M, Fernie AR. 2003. Reduced expression of aconitate results in an enhanced rate of photosynthesis and marked shifts in carbon partitioning in illuminated leaves of wild species tomato. Plant Physiology 133, 1322-1335.
4. Chetelat RT, DeVerna JW, Bennett AB. 1995. Introgression into tomato (Lycopersicon esculentum) of the L. chmielewskii sucrose accumulator gene (sucr) controlling fruit sugar composition. Theoretical and Applied Genetics 91, 327-333.
5. Courtney WH, Lambeth VN. 1977. Glycoalkaloid content of mature green fruit of Lycopersicon species. HortScience 12, 550-551.
6. Dixon RA, Sumner LW. 2003. Legume natural products: understanding and manipulating complex pathways for human and animal health. Plant Physiology 131, 878-885.
7. Dumville JC, Fry SC. 2003. Gentiobiose: a novel oligosaccharin in ripening tomato fruit. Planta 216, 484-495.
8. Eshed Y, Zamir D. 1994. A genomic library of Lycopersicon pennellii in Lycopersicon esculentum - a tool for fine mapping of genes. Euphytica 79, 175-179.
9. Eshed Y, D Zamir. 1995. An introgression line population of Lycopersicon pennellii in the cultivated tomato enables the identification and fine mapping of yield associated QTL. Genetics 141, 1147-1162.
10. Fernie AR. 2003. Metabolome characterization in plant system analysis. Functional Plant Biology 30, 111-120.
11. Fernie AR, Roessner U, Trethewey RN, Willmitzer L. 2001. The contribution of plastidial phosphoglucomutase to the control of starch synthesis within the potato tuber. Planta. 2001, 418-426.
12. Fernie AR, Trethewey RN, Krotzky AJ, Willmitzer L. 2004. Metabolite profiling: from diagnostics to systems biology. Nature Reviews Molecular Cell Biology 5, 763-769.
13. Foolad R, Zhang P, Khan AA, Nino-Liu D, Lin Y. 2002. Identification of QTLs for early blight (Alternaria solani) resistance in tomato using backcross populations of a Lycopersicon esculentumXL. hirsutum cross. Theoretical and Applied Genetics 104, 945-958.
14. Frankel N, Hasson E, Iusem ND, Rossi MS. 2003. Adaptive evolution of the water stress-induced gene Asr2 in Lycopersicon species dwelling in arid habitats. Molecular Biology and Evolution 20, 1955-1962.
15. Frary A, Nesbitt TC, Grandillo S, van der Knaap E, Cong B, Liu JP, Meller J, Elber R, Alpert KB, Tanksley SD. 2000. fw2.2: a quantitative trait locus key to the evolution of tomato fruit size. Science 289, 85-88.
16. Fridman E, Carrari F, Liu YS, Fernie AR, Zamir D. 2004. Zooming in on a quantitative trout for tomato yield using interspecific introgressions. Science 305, 1786-1789.
17. Fridman E, Pleban T, Zamir D. 2000. A recombination hotspot delimits a wild-species quantitative trait locus for tomato sugar content to 484 bp within an invertase gene. Proceedings of the National Academy of Sciences, USA 97, 4718-4723.
18. Gilmour SJ, Sebolt AM, Salazar MP, Everard JD, Thomashow MF. 2000. Overexpression of the Arabidopsis CBF3 transcriptional activator mimics multiple biochemical changes associated with cold acclimation. Plant Physiology 124, 1854-1865.
19. Grandilio S, Ku HM, Tanksley SD. 1996. Characterization of fs8.1, a major QTL influencing fruit shape in tomato. Molecular Breeding 2, 251-260.
20. Holtan HEE, Hake S. 2003. Quantitative trait locus analysis of leaf dissection in tomato using Lycopersicon pennellii segmental introgression lines. Genetics 165, 1541-1550.
21. Lamartiniere CA. 2000. Protection against breast cancer with genistein: a component of soy. American Journal of Clinical Nutrition 71, 1705S-1707S.
22. Lecomte L, Saliba-Colombani V, Gautier A, Gomez-Jimenez MC, Duffe P, Buret M, Causse M. 2004. Fine mapping of QTLs of chromosome 2 affecting the fruit architecture and composition of tomato. Molecular Breeding 13, 1-14.
23. Legnani R, Gognalons P, Selassie KG, Marchoux G, Moretti A, Laterrot H. 1996. Identification and characterization of resistance to tobacco etch virus in Lycopersicon species. Plant Disease 80, 306-309.
24. Liu YS, Gur A, Ronen G, Causse M, Damidaux R, Buret M, Hirschberg J, Zamir D. 2003. There is more to tomato fruit colour than candidate carotenoid genes. Plant Biotechnology Journal 1, 195-207.
25. Koornneef M, Alonso-Blanco C, Vreugdenhil D. 2004. Naturally occurring genetic variation in Arabidopsis thaliana. Annual Review of Plant Biology 55, 141-172.
26. Kovacs MIP, Howes NK, Clarke JM, Leslie D. 1998. Quality characteristics of durum wheat lines deriving high protein from Triticum dicoccoides (6b) substitution. Journal of Cereal Science 27, 47-51.
27. Maloof JN. 2003. Genomic approaches to analyzing natural variation in Arabidopsis thaliana. Current Opinion in Genetics and Development 13, 576-582.
28. Mitchell-Olds T, Gershenzon J, Baldwin I, Boland W. 1998. Research focus - chemical ecology in the molecular era. Trends in Plant Science 3, 362-365.
29. Monforte AJ, Asins MJ, Carbonell EA. 1997a. Salt tolerance in Lycopersicon species. V. Does genetic variability at quantitative trait loci affect their analysis? Theoretical and Applied Genetics 95, 284-293.
30. Monforte AJ, Asins MJ, Carbonell EA. 1997b. Salt tolerance in Lycopersicon species. VI. Genotype-by-salinity interaction in quantitative trait loci detection: constitutive and response QTLs. Theoretical and Applied Genetics 95, 706-713.
31. Murashige T, Skoog F. 1962. A revised medium for rapid growth and bioassays with tobacco tissue cultures. Physiology Plantarum 15, 473-497.
32. Pan Q, Liu YS, Budai-Hadrian O, Sela M, Carmel-Goren L, Zamir D, Fluhr R. 2000. Comparative genetics of nucleotide binding site-leucine rich repeat resistance gene homologues in the genomes of two dicotyledons: tomato and Arabidopsis. Genetics 155, 309-322.
33. Paterson AH, DeVerna JW, Lanini B, Tanksley SD. 1990. Fine mapping of quantitative trait loci using selected overlapping recombinant chromosomes, in an interspecies cross of tomato. Genetics 124, 735-742.
34. Ray JD, Kinfiger B, Sinclair TR. 1999. Introgressing root aerenchyma into maize. Maydica 444, 113-117.
35. Rick CM. 1974. High soluble-solids content in large-fruited tomato lines derived from a wild green-fruited species. Hilgardia 42, 493-510.
36. Roessner U, Luedemann A, Brust D, Fiehn O, Linke T, Willmitzer L, Fernie AR. 2001a. Metabolic profiling allows comprehensive phenotyping of genetically or environmentally modified plant systems. The Plant Cell 13, 11-29.
37. Roessner U, Willmitzer L, Fernie AR. 2001b. High-resolution metabolic phenotyping of genetically and environmentally diverse potato tuber systems. Identification of phenocopies. Plant Physiology 127, 749-764.
38. Roessner-Tunali U, Hegemann B, Lytovchenko A, Carrari F, Bruedigam C, Granot D, Fernie AR. 2003. Metabolic profiling of transgenic tomato plants overexpressing hexokinase reveals that the influence of hexose phosphorylation diminishes during fruit development. Plant Physiology 133, 84-99.
39. Ronen G, Carmel-Goren L, Zamir D, Hirschberg J. 2000. An alternative pathway to β-carotene formation in plant chromoplasts discovered by map-based cloning of β and old-gold color mutations in tomato. Proceedings of the National Academy of Sciences, USA 97, 11102-11107.
40. Saliba-Colombani V, Causse M, Langlois D, Philouze J, Buret M. 2001. Genetic analysis of organoleptic quality in fresh market tomato. 1. Mapping QTLs for physical and chemical traits. Theoretical and Applied Genetics 102, 259-272.
41. Sebolt AM, Shoemaker RC, Diers BW. 2000. Analysis of a quantitative trait locus allele from wild soybean that increases seed protein concentration in soybean. Crop Science 40, 1438-1444.
42. Stitt M, Fernie AR. 2003. From measurements of metabolites to metabolomics: an On the fly' perspective illustrated by recent studies of carbon-nitrogen interactions. Current Opinion in Biotechnology 14, 136-144.
43. Tadmor Y, Fridman E, Gur A, Larkov O, Lastochkin E, Ravid U, Zamir D, Lewinsohn E. 2002. Identification of malodorous, a wild species allele affecting tomato aroma that was selected against during domestication. Journal of Agricultural and Food Chemistry 50, 2005-2009.
44. Tauberger E, Fernie AR, Emmermann M, Renz A, Kossmann J, Willmitzer L, Trethewey RN. 2000. Antisense inhibition of plastidial phosphoglucomutase provides compelling evidence that potato tuber amyloplasts import carbon from the cytosol in the form of glucose-6-phosphate. The Plant Journal 23, 43-53.
45. Van der Knaap E, Lippman ZB, Tanksley SD. 2002. Extremely elongated tomato fruit controlled by four quantitative trait loci with epistatic interactions. Theoretical and Applied Genetics 104, 241-247.
46. Venema JH, Posthumus F, van Hasselt PR. 1999. Impact of suboptimal temperature on growth, photosynthesis, leaf pigments, and carbohydrates of domestic and high-altitude wild Lycopersicon species. Journal of Plant Physiology 155, 711-718.
47. Yates HE, Frary A, Doganlar S, Frampton A, Eannetta NT, Uhlig J, Tanksley SD. 2004. Comparative fine mapping of fruit quality QTLs on chromosome 4 introgressions derived from two wild tomato species. Euphytica 135, 283-296.
48. Zamir D. 2001. Improving plant breeding with exotic genetic libraries. Nature Reviews Genetics 2, 983-990.