메뉴 건너뛰기




Volumn 26, Issue 1, 2014, Pages 74-82

Editing livestock genomes with site-specific nucleases

Author keywords

Clustered regularly interspaced short palindromic repeats Cas9; Homology directed repair; Non homologous end joining; Somatic cell nuclear transfer; Transcription activator like effector nucleases; Zinc finger nucleases

Indexed keywords

NUCLEASE; PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR GAMMA; POLYPEPTIDE;

EID: 84889810604     PISSN: 10313613     EISSN: 14485990     Source Type: Journal    
DOI: 10.1071/RD13260     Document Type: Article
Times cited : (18)

References (55)
  • 3
    • 77956126894 scopus 로고    scopus 로고
    • Xanthomonas AvrBs3 Family-Type III effectors: Discovery and function
    • doi:10.1146/ANNUREV-PHYTO-080508-081936
    • Boch, J., and Bonas, U. (2010). Xanthomonas AvrBs3 Family-Type III effectors: discovery and function. Annu. Rev. Phytopathol. 48, 419-436. doi:10.1146/ANNUREV-PHYTO-080508-081936
    • (2010) Annu. Rev. Phytopathol. , vol.48 , pp. 419-436
    • Boch, J.1    Bonas, U.2
  • 4
    • 72149110399 scopus 로고    scopus 로고
    • Breaking the code of DNA binding specificity of TAL-Type III effectors
    • doi:10.1126/SCIENCE.1178811
    • Boch, J., Scholze, H., Schornack, S., Landgraf, A., Hahn, S., Kay, S., Lahaye, T., Nickstadt, A., and Bonas, U. (2009). Breaking the code of DNA binding specificity of TAL-Type III effectors. Science 326, 1509-1512. doi:10.1126/SCIENCE.1178811
    • (2009) Science , vol.326 , pp. 1509-1512
    • Boch, J.1    Scholze, H.2    Schornack, S.3    Landgraf, A.4    Hahn, S.5    Kay, S.6    Lahaye, T.7    Nickstadt, A.8    Bonas, U.9
  • 5
    • 49249086205 scopus 로고    scopus 로고
    • Impaired capsaicin-induced relaxation of coronary arteries in a porcine model of the metabolic syndrome
    • doi:10.1152/AJPHEART.01191.2007
    • Bratz, I.N., Dick, G. M., Tune, J.D., Edwards, J.M., Neeb, Z. P., Dincer, U.D., and Sturek, M. (2008). Impaired capsaicin-induced relaxation of coronary arteries in a porcine model of the metabolic syndrome. Am. J. Physiol. Heart Circ. Physiol. 294, H2489-H2496. doi:10.1152/AJPHEART.01191.2007
    • (2008) Am. J. Physiol. Heart Circ. Physiol. , vol.294
    • Bratz, I.N.1    Dick, G.M.2    Tune, J.D.3    Edwards, J.M.4    Neeb, Z.P.5    Dincer, U.D.6    Sturek, M.7
  • 6
    • 0030609861 scopus 로고    scopus 로고
    • Bypass of senescence after disruption of p21CIP1/WAF1 gene in normal diploid human fibroblasts
    • doi:10.1126/SCIENCE.277.5327.831
    • Brown, J. P., Wei, W., and Sedivy, J.M. (1997). Bypass of senescence after disruption of p21CIP1/WAF1 gene in normal diploid human fibroblasts. Science 277, 831-834. doi:10.1126/SCIENCE.277.5327.831
    • (1997) Science , vol.277 , pp. 831-834
    • Brown, J.P.1    Wei, W.2    Sedivy, J.M.3
  • 8
    • 19544371373 scopus 로고    scopus 로고
    • Gene targeting in mice: Functional analysis of the mammalian genome for the twenty-first century
    • doi:10.1038/NRG1619
    • Capecchi, M. R. (2005). Gene targeting in mice: functional analysis of the mammalian genome for the twenty-first century. Nat. Rev. Genet. 6, 507-512. doi:10.1038/NRG1619
    • (2005) Nat. Rev. Genet. , vol.6 , pp. 507-512
    • Capecchi, M.R.1
  • 14
  • 15
    • 84864856835 scopus 로고    scopus 로고
    • Comprehensive interrogation of natural TALE DNA-binding modules and transcriptional repressor domains
    • doi:10.1038/NCOMMS1962
    • Cong, L., Zhou, R., Kuo, Y. C., Cunniff, M., and Zhang, F. (2012). Comprehensive interrogation of natural TALE DNA-binding modules and transcriptional repressor domains. Nat. Commun. 3, 968. doi:10.1038/NCOMMS1962
    • (2012) Nat. Commun. , vol.3 , pp. 968
    • Cong, L.1    Zhou, R.2    Kuo, Y.C.3    Cunniff, M.4    Zhang, F.5
  • 17
    • 38849103093 scopus 로고    scopus 로고
    • DNA-binding specificity is a major determinant of the activity and toxicity of zinc-finger nucleases
    • doi:10.1038/SJ.MT.6300357
    • Cornu, T. I., Thibodeau-Beganny, S., Guhl, E., Alwin, S., Eichtinger, M., Joung, J., and Cathomen, T. (2008). DNA-binding specificity is a major determinant of the activity and toxicity of zinc-finger nucleases. Mol. Ther. 16, 352-358. doi:10.1038/SJ.MT.6300357
    • (2008) Mol. Ther. , vol.16 , pp. 352-358
    • Cornu, T.I.1    Thibodeau-Beganny, S.2    Guhl, E.3    Alwin, S.4    Eichtinger, M.5    Joung, J.6    Cathomen, T.7
  • 18
    • 78651322138 scopus 로고    scopus 로고
    • Targeted integration in rat and mouse embryos with zinc-finger nucleases
    • doi:10.1038/NBT.1731
    • Cui, X., Ji, D., Fisher, D. A., Wu, Y., Briner, D. M., and Weinstein, E. J. (2011). Targeted integration in rat and mouse embryos with zinc-finger nucleases. Nat. Biotechnol. 29, 64-67. doi:10.1038/NBT.1731
    • (2011) Nat. Biotechnol. , vol.29 , pp. 64-67
    • Cui, X.1    Ji, D.2    Fisher, D.A.3    Wu, Y.4    Briner, D.M.5    Weinstein, E.J.6
  • 19
    • 84866156176 scopus 로고    scopus 로고
    • Simple methods for generating and detecting locus-specific mutations induced with TALENs in the zebrafish genome
    • doi:10.1371/JOURNAL.PGEN.1002861
    • Dahlem, T. J., Hoshijima, K., Jurynec, M. J., Gunther, D., Starker, C. G., Locke, A. S., Weis, A. M., Voytas, D. F., and Grunwald, D. J. (2012). Simple methods for generating and detecting locus-specific mutations induced with TALENs in the zebrafish genome. PLoS Genet. 8, e1002861. doi:10.1371/JOURNAL. PGEN.1002861
    • (2012) PLoS Genet. , vol.8
    • Dahlem, T.J.1    Hoshijima, K.2    Jurynec, M.J.3    Gunther, D.4    Starker, C.G.5    Locke, A.S.6    Weis, A.M.7    Voytas, D.F.8    Grunwald, D.J.9
  • 27
    • 84876567971 scopus 로고    scopus 로고
    • RNAprogrammed genome editing in human cells
    • doi:10.7554/ELIFE.00471
    • Jinek, M., East, A., Cheng, A., Lin, S., Ma, E., and Doudna, J. (2013). RNAprogrammed genome editing in human cells. eLife 2. doi:10.7554/ELIFE.00471
    • (2013) ELife , pp. 2
    • Jinek, M.1    East, A.2    Cheng, A.3    Lin, S.4    Ma, E.5    Doudna, J.6
  • 28
    • 0030032063 scopus 로고    scopus 로고
    • Hybrid restriction enzymes: Zinc finger fusions to Fok i cleavage domain
    • doi:10.1073/PNAS.93.3.1156
    • Kim, Y. G., Cha, J., and Chandrasegaran, S. (1996). Hybrid restriction enzymes: zinc finger fusions to Fok I cleavage domain. Proc. Natl Acad. Sci. USA 93, 1156-1160. doi:10.1073/PNAS.93.3.1156
    • (1996) Proc. Natl Acad. Sci. USA , vol.93 , pp. 1156-1160
    • Kim, Y.G.1    Cha, J.2    Chandrasegaran, S.3
  • 30
    • 0037154209 scopus 로고    scopus 로고
    • Mutation rates in mammalian genomes
    • doi:10.1073/PNAS. 022629899
    • Kumar, S., and Subramanian, S. (2002). Mutation rates in mammalian genomes. Proc. Natl Acad. Sci. USA 99, 803-808. doi:10.1073/PNAS. 022629899
    • (2002) Proc. Natl Acad. Sci. USA , vol.99 , pp. 803-808
    • Kumar, S.1    Subramanian, S.2
  • 32
    • 44849108492 scopus 로고    scopus 로고
    • Update and analysis of the University College London low density lipoprotein receptor familial hypercholesterolemia database
    • doi:10.1111/J.1469-1809.2008.00436.X
    • Leigh, S. E., Foster, A. H., Whittall, R. A., Hubbart, C. S., and Humphries, S. E. (2008). Update and analysis of the University College London low density lipoprotein receptor familial hypercholesterolemia database. Ann. Hum. Genet. 72, 485-498. doi:10.1111/J.1469-1809.2008.00436.X
    • (2008) Ann. Hum. Genet. , vol.72 , pp. 485-498
    • Leigh, S.E.1    Foster, A.H.2    Whittall, R.A.3    Hubbart, C.S.4    Humphries, S.E.5
  • 33
    • 0023779566 scopus 로고
    • Deletion in the first cysteine-rich repeat of low density lipoprotein receptor impairs its transport but not lipoprotein binding in fibroblasts from a subject with familial hypercholesterolemia
    • doi:10.1073/PNAS.85.21.7912
    • Leitersdorf, E., Hobbs, H. H., Fourie, A. M., Jacobs, M., van der Westhuyzen, D. R., and Coetzee, G. A. (1988). Deletion in the first cysteine-rich repeat of low density lipoprotein receptor impairs its transport but not lipoprotein binding in fibroblasts from a subject with familial hypercholesterolemia. Proc. Natl Acad. Sci. USA 85, 7912-7916. doi:10.1073/PNAS.85.21.7912
    • (1988) Proc. Natl Acad. Sci. USA , vol.85 , pp. 7912-7916
    • Leitersdorf, E.1    Hobbs, H.H.2    Fourie, A.M.3    Jacobs, M.4    Van Der-Westhuyzen, D.R.5    Coetzee, G.A.6
  • 34
    • 79960034141 scopus 로고    scopus 로고
    • Modularly assembled designer TAL effector nucleases for targeted gene knockout and gene replacement in eukaryotes
    • doi:10.1093/NAR/GKR188
    • Li, T., Huang, S., Zhao, X., Wright, D. A., Carpenter, S., Spalding, M. H., Weeks, D. P., and Yang, B. (2011). Modularly assembled designer TAL effector nucleases for targeted gene knockout and gene replacement in eukaryotes. Nucleic Acids Res. 39, 6315-6325. doi:10.1093/NAR/GKR188
    • (2011) Nucleic Acids Res. , vol.39 , pp. 6315-6325
    • Li, T.1    Huang, S.2    Zhao, X.3    Wright, D.A.4    Carpenter, S.5    Spalding, M.H.6    Weeks, D.P.7    Yang, B.8
  • 38
    • 79960066049 scopus 로고    scopus 로고
    • Assembly of custom TALE-type DNA binding domains by modular cloning
    • doi:10.1093/NAR/GKR151
    • Morbitzer, R., Elsaesser, J., Hausner, J., and Lahaye, T. (2011). Assembly of custom TALE-type DNA binding domains by modular cloning. Nucleic Acids Res. 39, 5790-5799. doi:10.1093/NAR/GKR151
    • (2011) Nucleic Acids Res. , vol.39 , pp. 5790-5799
    • Morbitzer, R.1    Elsaesser, J.2    Hausner, J.3    Lahaye, T.4
  • 39
    • 72149090954 scopus 로고    scopus 로고
    • A simple cipher governs DNA recognition by TAL effectors
    • doi:10.1126/SCIENCE.1178817
    • Moscou, M. J., and Bogdanove, A. J. (2009). A simple cipher governs DNA recognition by TAL effectors. Science 326, 1501. doi:10.1126/SCIENCE.1178817
    • (2009) Science , vol.326 , pp. 1501
    • Moscou, M.J.1    Bogdanove, A.J.2
  • 40
    • 80053039555 scopus 로고    scopus 로고
    • A novel TALE nuclease scaffold enables high genome editing activity in combination with low toxicity
    • doi:10.1093/NAR/GKR597
    • Mussolino, C., Morbitzer, R., Lutge, F., Dannemann, N., Lahaye, T., and Cathomen, T. (2011). A novel TALE nuclease scaffold enables high genome editing activity in combination with low toxicity. Nucleic Acids Res. 39, 9283-9293. doi:10.1093/NAR/GKR597
    • (2011) Nucleic Acids Res. , vol.39 , pp. 9283-9293
    • Mussolino, C.1    Morbitzer, R.2    Lutge, F.3    Dannemann, N.4    Lahaye, T.5    Cathomen, T.6
  • 42
    • 80052293623 scopus 로고    scopus 로고
    • Revealing off-target cleavage specificities of zinc-finger nucleases by in vitro selection
    • doi:10.1038/NMETH.1670
    • Pattanayak, V., Ramirez, C. L., Joung, J. K., and Liu, D. R. (2011). Revealing off-target cleavage specificities of zinc-finger nucleases by in vitro selection. Nat. Methods 8, 765-770. doi:10.1038/NMETH.1670
    • (2011) Nat. Methods , vol.8 , pp. 765-770
    • Pattanayak, V.1    Ramirez, C.L.2    Joung, J.K.3    Liu, D.R.4
  • 43
    • 0027143957 scopus 로고
    • Gene targeting in human somatic cells. Complete inactivation of an interferon-inducible gene
    • doi:10.1111/J.1432-1033.1993.TB18375.X
    • Porter, A. C., and Itzhaki, J. E. (1993). Gene targeting in human somatic cells. Complete inactivation of an interferon-inducible gene. Eur. J. Biochem. 218, 273-281. doi:10.1111/J.1432-1033.1993.TB18375.X
    • (1993) Eur. J. Biochem. , vol.218 , pp. 273-281
    • Porter, A.C.1    Itzhaki, J.E.2
  • 44
    • 23444441147 scopus 로고    scopus 로고
    • Gene targeting using zinc finger nucleases
    • doi:10.1038/NBT1125
    • Porteus, M. H., and Carroll, D. (2005). Gene targeting using zinc finger nucleases. Nat. Biotechnol. 23, 967-973. doi:10.1038/NBT1125
    • (2005) Nat. Biotechnol. , vol.23 , pp. 967-973
    • Porteus, M.H.1    Carroll, D.2
  • 45
    • 0028237305 scopus 로고
    • Expression of a site-specific endonuclease stimulates homologous recombination in mammalian cells
    • doi:10.1073/PNAS. 91.13.6064
    • Rouet, P., Smih, F., and Jasin, M. (1994). Expression of a site-specific endonuclease stimulates homologous recombination in mammalian cells. Proc. Natl Acad. Sci. USA 91, 6064-6068. doi:10.1073/PNAS. 91.13.6064
    • (1994) Proc. Natl Acad. Sci. USA , vol.91 , pp. 6064-6068
    • Rouet, P.1    Smih, F.2    Jasin, M.3
  • 46
    • 84863678546 scopus 로고    scopus 로고
    • TAL effector RVD specificities and efficiencies
    • doi:10.1038/NBT.2304
    • Streubel, J., Blucher, C., Landgraf, A., and Boch, J. (2012). TAL effector RVD specificities and efficiencies. Nat. Biotechnol. 30, 593-595. doi:10.1038/NBT.2304
    • (2012) Nat. Biotechnol. , vol.30 , pp. 593-595
    • Streubel, J.1    Blucher, C.2    Landgraf, A.3    Boch, J.4
  • 47
    • 34447323568 scopus 로고    scopus 로고
    • Structure-based redesign of the dimerization interface reduces the toxicity of zinc-finger nucleases
    • doi:10.1038/NBT1317
    • Szczepek, M., Brondani, V., Buchel, J., Serrano, L., Segal, D. J., and Cathomen, T. (2007). Structure-based redesign of the dimerization interface reduces the toxicity of zinc-finger nucleases. Nat. Biotechnol. 25, 786-793. doi:10.1038/NBT1317
    • (2007) Nat. Biotechnol. , vol.25 , pp. 786-793
    • Szczepek, M.1    Brondani, V.2    Buchel, J.3    Serrano, L.4    Segal, D.J.5    Cathomen, T.6
  • 48
    • 84867688971 scopus 로고    scopus 로고
    • Precision editing of large animal genomes
    • (Eds J. D. T. Friedmann and G. Stephen.) (Academic Press: Waltham, MA.)
    • Tan, W., Carlson, D. F., Walton, M. W., Fahrenkrug, S. C., and Hackett, P. B. (2012). Precision editing of large animal genomes. In 'Advances in Genetics', volume 80. (Eds J. D. T. Friedmann and G. Stephen.) pp. 37-97. (Academic Press: Waltham, MA.)
    • (2012) Advances in Genetics , vol.80 , pp. 37-97
    • Tan, W.1    Carlson, D.F.2    Walton, M.W.3    Fahrenkrug, S.C.4    Hackett, P.B.5
  • 50
    • 0023646810 scopus 로고
    • Site-directed mutagenesis by gene targeting in mouse embryo-derived stem cells
    • doi:10.1016/0092-8674(87)90646-5
    • Thomas, K. R., and Capecchi, M. R. (1987). Site-directed mutagenesis by gene targeting in mouse embryo-derived stem cells. Cell 51, 503-512. doi:10.1016/0092-8674(87)90646-5
    • (1987) Cell , vol.51 , pp. 503-512
    • Thomas, K.R.1    Capecchi, M.R.2
  • 52
    • 27744574725 scopus 로고    scopus 로고
    • Dynamic gene expression after systemic delivery of plasmid DNA as determined by in vivo bioluminescence imaging
    • doi:10.1089/HUM.2005.16.1325
    • Wilber, A., Frandsen, J. L., Wangensteen, K. J., Ekker, S. C., Wang, X., and McIvor, R. S. (2005). Dynamic gene expression after systemic delivery of plasmid DNA as determined by in vivo bioluminescence imaging. Hum. Gene Ther. 16, 1325-1332. doi:10.1089/HUM.2005.16.1325
    • (2005) Hum. Gene Ther. , vol.16 , pp. 1325-1332
    • Wilber, A.1    Frandsen, J.L.2    Wangensteen, K.J.3    Ekker, S.C.4    Wang, X.5    McIvor, R.S.6
  • 53
    • 0031044215 scopus 로고    scopus 로고
    • Viable offspring derived from fetal and adult mammalian cells
    • doi:10.1038/385810A0
    • Wilmut, I., Schnieke, A. E., McWhir, J., Kind, A. J., and Campbell, K. H. (1997). Viable offspring derived from fetal and adult mammalian cells. Nature 385, 810-813. doi:10.1038/385810A0
    • (1997) Nature , vol.385 , pp. 810-813
    • Wilmut, I.1    Schnieke, A.E.2    McWhir, J.3    Kind, A.J.4    Campbell, K.H.5
  • 55
    • 80555150663 scopus 로고    scopus 로고
    • Highly efficient modification of beta-lactoglobulin (BLG) gene via zinc-finger nucleases in cattle
    • doi:10.1038/CR.2011.153
    • Yu, S., Luo, J., Song, Z., Ding, F., Dai, Y., and Li, N. (2011). Highly efficient modification of beta-lactoglobulin (BLG) gene via zinc-finger nucleases in cattle. Cell Res. 21, 1638-1640. doi:10.1038/CR.2011.153
    • (2011) Cell Res. , vol.21 , pp. 1638-1640
    • Yu, S.1    Luo, J.2    Song, Z.3    Ding, F.4    Dai, Y.5    Li, N.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.