-
1
-
-
77952569347
-
Inducible gene expression: diverse regulatory mechanisms
-
Weake VM, Workman JL, (2010) Inducible gene expression: diverse regulatory mechanisms. Nat Rev Gen 11: 426-437.
-
(2010)
Nat Rev Gen
, vol.11
, pp. 426-437
-
-
Weake, V.M.1
Workman, J.L.2
-
2
-
-
81255210794
-
Transcriptional regulation in Saccharomyces cerevisiae: transcription factor regulation and function, mechanisms of initiation, and roles of activators and coactivators
-
Hahn S, Young ET, (2011) Transcriptional regulation in Saccharomyces cerevisiae: transcription factor regulation and function, mechanisms of initiation, and roles of activators and coactivators. Genetics 189: 705-736.
-
(2011)
Genetics
, vol.189
, pp. 705-736
-
-
Hahn, S.1
Young, E.T.2
-
3
-
-
84868683051
-
Regulation of mammalian cell differentiation by long non-coding RNAs
-
Hu W, Alvarez-Dominguez JR, Lodish HF, (2012) Regulation of mammalian cell differentiation by long non-coding RNAs. EMBO Rep 13: 971-983.
-
(2012)
EMBO Rep
, vol.13
, pp. 971-983
-
-
Hu, W.1
Alvarez-Dominguez, J.R.2
Lodish, H.F.3
-
4
-
-
84861904178
-
Genome regulation by long noncoding RNAs
-
Rinn JL, Chang HY, (2012) Genome regulation by long noncoding RNAs. Annu Rev Biochem 81: 145-166.
-
(2012)
Annu Rev Biochem
, vol.81
, pp. 145-166
-
-
Rinn, J.L.1
Chang, H.Y.2
-
5
-
-
79961028059
-
Xist regulation and function explored
-
Pontier DB, Gribnau J, (2011) Xist regulation and function explored. Human Genetics 130: 223-236.
-
(2011)
Human Genetics
, vol.130
, pp. 223-236
-
-
Pontier, D.B.1
Gribnau, J.2
-
6
-
-
81855212626
-
Gracefully ageing at 50, X-chromosome inactivation becomes a paradigm for RNA and chromatin control
-
Lee JT, (2011) Gracefully ageing at 50, X-chromosome inactivation becomes a paradigm for RNA and chromatin control. Nat Rev Mol Cell Biol 12: 815-826.
-
(2011)
Nat Rev Mol Cell Biol
, vol.12
, pp. 815-826
-
-
Lee, J.T.1
-
7
-
-
55349109963
-
Polycomb proteins targeted by a short repeat RNA to the mouse X chromosome
-
Zhao J, Sun BK, Erwin JA, Song JJ, Lee JT, (2008) Polycomb proteins targeted by a short repeat RNA to the mouse X chromosome. Science 322: 750-756.
-
(2008)
Science
, vol.322
, pp. 750-756
-
-
Zhao, J.1
Sun, B.K.2
Erwin, J.A.3
Song, J.J.4
Lee, J.T.5
-
8
-
-
77954572735
-
Long noncoding RNA as modular scaffold of histone modification complexes
-
Tsai MC, Manor O, Wan Y, Mosammaparast N, Wang JK, et al. (2010) Long noncoding RNA as modular scaffold of histone modification complexes. Science 329: 689-693.
-
(2010)
Science
, vol.329
, pp. 689-693
-
-
Tsai, M.C.1
Manor, O.2
Wan, Y.3
Mosammaparast, N.4
Wang, J.K.5
-
9
-
-
79959756263
-
Extensive and coordinated transcription of noncoding RNAs within cell-cycle promoters
-
Hung T, Wang Y, Lin MF, Koegel AK, Kotake Y, et al. (2011) Extensive and coordinated transcription of noncoding RNAs within cell-cycle promoters. Nat Gen 43: 621-629.
-
(2011)
Nat Gen
, vol.43
, pp. 621-629
-
-
Hung, T.1
Wang, Y.2
Lin, M.F.3
Koegel, A.K.4
Kotake, Y.5
-
10
-
-
84874368349
-
Activating RNAs associate with Mediator to enhance chromatin architecture and transcription
-
Lai F, Orom UA, Cesaroni M, Beringer M, Taatjes DJ, et al. (2013) Activating RNAs associate with Mediator to enhance chromatin architecture and transcription. Nature 494: 497-501.
-
(2013)
Nature
, vol.494
, pp. 497-501
-
-
Lai, F.1
Orom, U.A.2
Cesaroni, M.3
Beringer, M.4
Taatjes, D.J.5
-
11
-
-
33744804277
-
The Evf-2 noncoding RNA is transcribed from the Dlx-5/6 ultraconserved region and functions as a Dlx-2 transcriptional coactivator
-
Feng J, Bi C, Clark BS, Mady R, Shah P, et al. (2006) The Evf-2 noncoding RNA is transcribed from the Dlx-5/6 ultraconserved region and functions as a Dlx-2 transcriptional coactivator. Genes Dev 20: 1470-1484.
-
(2006)
Genes Dev
, vol.20
, pp. 1470-1484
-
-
Feng, J.1
Bi, C.2
Clark, B.S.3
Mady, R.4
Shah, P.5
-
12
-
-
84870182699
-
Noncoding transcription at enhancers: general principles and functional models
-
Natoli G, Andrau JC, (2012) Noncoding transcription at enhancers: general principles and functional models. Annu Rev Genet 46: 1-19.
-
(2012)
Annu Rev Genet
, vol.46
, pp. 1-19
-
-
Natoli, G.1
Andrau, J.C.2
-
13
-
-
77957243921
-
Long noncoding RNAs with enhancer-like function in human cells
-
Orom UA, Derrien T, Beringer M, Gumireddy K, Gardini A, et al. (2010) Long noncoding RNAs with enhancer-like function in human cells. Cell 143: 46-58.
-
(2010)
Cell
, vol.143
, pp. 46-58
-
-
Orom, U.A.1
Derrien, T.2
Beringer, M.3
Gumireddy, K.4
Gardini, A.5
-
14
-
-
78650873365
-
Intergenic transcription causes repression by directing nucleosome assembly
-
Hainer SJ, Pruneski JA, Mitchell RD, Monteverde RM, Martens JA, (2011) Intergenic transcription causes repression by directing nucleosome assembly. Genes Dev 25: 29-40.
-
(2011)
Genes Dev
, vol.25
, pp. 29-40
-
-
Hainer, S.J.1
Pruneski, J.A.2
Mitchell, R.D.3
Monteverde, R.M.4
Martens, J.A.5
-
15
-
-
34249942265
-
A role for noncoding transcription in activation of the yeast PHO5 gene
-
Uhler JP, Hertel C, Svejstrup JQ, (2007) A role for noncoding transcription in activation of the yeast PHO5 gene. Proc Natl Acad Sci U S A 104: 8011-8016.
-
(2007)
Proc Natl Acad Sci U S A
, vol.104
, pp. 8011-8016
-
-
Uhler, J.P.1
Hertel, C.2
Svejstrup, J.Q.3
-
16
-
-
84871060911
-
Airn transcriptional overlap, but not its lncRNA products, induces imprinted Igf2r silencing
-
Latos PA, Pauler FM, Koerner MV, Senergin HB, Hudson QJ, et al. (2012) Airn transcriptional overlap, but not its lncRNA products, induces imprinted Igf2r silencing. Science 338: 1469-1472.
-
(2012)
Science
, vol.338
, pp. 1469-1472
-
-
Latos, P.A.1
Pauler, F.M.2
Koerner, M.V.3
Senergin, H.B.4
Hudson, Q.J.5
-
17
-
-
84455206362
-
Conserved function of lincRNAs in vertebrate embryonic development despite rapid sequence evolution
-
Ulitsky I, Shkumatava A, Jan CH, Sive H, Bartel DP, (2011) Conserved function of lincRNAs in vertebrate embryonic development despite rapid sequence evolution. Cell 147: 1537-1550.
-
(2011)
Cell
, vol.147
, pp. 1537-1550
-
-
Ulitsky, I.1
Shkumatava, A.2
Jan, C.H.3
Sive, H.4
Bartel, D.P.5
-
18
-
-
84881146602
-
Long noncoding RNAs: new players in the molecular mechanism for maintenance and differentiation of pluripotent stem cells
-
Ghosal S, Das S, Chakrabarti J, (2013) Long noncoding RNAs: new players in the molecular mechanism for maintenance and differentiation of pluripotent stem cells. Stem Cells Dev 22: 2240-2253.
-
(2013)
Stem Cells Dev
, vol.22
, pp. 2240-2253
-
-
Ghosal, S.1
Das, S.2
Chakrabarti, J.3
-
19
-
-
84870159493
-
Long non-coding RNAs involved in cancer development and cell fate determination
-
Kitagawa M, Kotake Y, Ohhata T, (2012) Long non-coding RNAs involved in cancer development and cell fate determination. Curr Drug Targets 13: 1616-1621.
-
(2012)
Curr Drug Targets
, vol.13
, pp. 1616-1621
-
-
Kitagawa, M.1
Kotake, Y.2
Ohhata, T.3
-
20
-
-
84874529746
-
Imprinted Igf2r silencing depends on continuous Airn lncRNA expression and is not restricted to a developmental window
-
Santoro F, Mayer D, Klement RM, Warczok KE, Stukalov A, et al. (2013) Imprinted Igf2r silencing depends on continuous Airn lncRNA expression and is not restricted to a developmental window. Development 140: 1184-1195.
-
(2013)
Development
, vol.140
, pp. 1184-1195
-
-
Santoro, F.1
Mayer, D.2
Klement, R.M.3
Warczok, K.E.4
Stukalov, A.5
-
21
-
-
80052869283
-
lincRNAs act in the circuitry controlling pluripotency and differentiation
-
Guttman M, Donaghey J, Carey BW, Garber M, Grenier JK, et al. (2011) lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature 477: 295-300.
-
(2011)
Nature
, vol.477
, pp. 295-300
-
-
Guttman, M.1
Donaghey, J.2
Carey, B.W.3
Garber, M.4
Grenier, J.K.5
-
22
-
-
84864927713
-
Emerging functional and mechanistic paradigms of mammalian long non-coding RNAs
-
Moran VA, Perera RJ, Khalil AM, (2012) Emerging functional and mechanistic paradigms of mammalian long non-coding RNAs. Nucleic Acids Res 40: 6391-6400.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 6391-6400
-
-
Moran, V.A.1
Perera, R.J.2
Khalil, A.M.3
-
23
-
-
33846930357
-
Repression of the human dihydrofolate reductase gene by a non-coding interfering transcript
-
Martianov I, Ramadass A, Serra Barros A, Chow N, Akoulitchev A, (2007) Repression of the human dihydrofolate reductase gene by a non-coding interfering transcript. Nature 445: 666-670.
-
(2007)
Nature
, vol.445
, pp. 666-670
-
-
Martianov, I.1
Ramadass, A.2
Serra Barros, A.3
Chow, N.4
Akoulitchev, A.5
-
24
-
-
56849093493
-
A ncRNA modulates histone modification and mRNA induction in the yeast GAL gene cluster
-
Houseley J, Rubbi L, Grunstein M, Tollervey D, Vogelauer M, (2008) A ncRNA modulates histone modification and mRNA induction in the yeast GAL gene cluster. Mol Cell 32: 685-695.
-
(2008)
Mol Cell
, vol.32
, pp. 685-695
-
-
Houseley, J.1
Rubbi, L.2
Grunstein, M.3
Tollervey, D.4
Vogelauer, M.5
-
25
-
-
84856782922
-
Decapping of long noncoding RNAs regulates inducible genes
-
Geisler S, Lojek L, Khalil AM, Baker KE, Coller J, (2012) Decapping of long noncoding RNAs regulates inducible genes. Mol Cell 45: 279-291.
-
(2012)
Mol Cell
, vol.45
, pp. 279-291
-
-
Geisler, S.1
Lojek, L.2
Khalil, A.M.3
Baker, K.E.4
Coller, J.5
-
26
-
-
67649550089
-
H3 lysine 4 di- and tri-methylation deposited by cryptic transcription attenuates promoter activation
-
Pinskaya M, Gourvennec S, Morillon A, (2009) H3 lysine 4 di- and tri-methylation deposited by cryptic transcription attenuates promoter activation. EMBO J 28: 1697-1707.
-
(2009)
EMBO J
, vol.28
, pp. 1697-1707
-
-
Pinskaya, M.1
Gourvennec, S.2
Morillon, A.3
-
27
-
-
54449085117
-
Galactose metabolism in yeast-structure and regulation of the leloir pathway enzymes and the genes encoding them
-
Sellick CA, Campbell RN, Reece RJ, (2008) Galactose metabolism in yeast-structure and regulation of the leloir pathway enzymes and the genes encoding them. Int Rev Cell Mol Biol 269: 111-150.
-
(2008)
Int Rev Cell Mol Biol
, vol.269
, pp. 111-150
-
-
Sellick, C.A.1
Campbell, R.N.2
Reece, R.J.3
-
28
-
-
0031810672
-
Yeast carbon catabolite repression
-
Gancedo JM, (1998) Yeast carbon catabolite repression. MMBR 62: 334-361.
-
(1998)
MMBR
, vol.62
, pp. 334-361
-
-
Gancedo, J.M.1
-
29
-
-
33745195271
-
Yeast Gal4: a transcriptional paradigm revisited
-
Traven A, Jelicic B, Sopta M, (2006) Yeast Gal4: a transcriptional paradigm revisited. EMBO Rep 7: 496-499.
-
(2006)
EMBO Rep
, vol.7
, pp. 496-499
-
-
Traven, A.1
Jelicic, B.2
Sopta, M.3
-
30
-
-
0031042946
-
Galactose-dependent reversible interaction of Gal3p with Gal80p in the induction pathway of Gal4p-activated genes of Saccharomyces cerevisiae
-
Yano K, Fukasawa T, (1997) Galactose-dependent reversible interaction of Gal3p with Gal80p in the induction pathway of Gal4p-activated genes of Saccharomyces cerevisiae. Proc Natl Acad Sci U S A 94: 1721-1726.
-
(1997)
Proc Natl Acad Sci U S A
, vol.94
, pp. 1721-1726
-
-
Yano, K.1
Fukasawa, T.2
-
31
-
-
0032527810
-
The yeast galactose genetic switch is mediated by the formation of a Gal4p-Gal80p-Gal3p complex
-
Platt A, Reece RJ, (1998) The yeast galactose genetic switch is mediated by the formation of a Gal4p-Gal80p-Gal3p complex. EMBO J 17: 4086-4091.
-
(1998)
EMBO J
, vol.17
, pp. 4086-4091
-
-
Platt, A.1
Reece, R.J.2
-
32
-
-
0034967623
-
Transcriptional control of the GAL/MEL regulon of yeast Saccharomyces cerevisiae: mechanism of galactose-mediated signal transduction
-
Bhat PJ, Murthy TV, (2001) Transcriptional control of the GAL/MEL regulon of yeast Saccharomyces cerevisiae: mechanism of galactose-mediated signal transduction. Mol Microbiol 40: 1059-1066.
-
(2001)
Mol Microbiol
, vol.40
, pp. 1059-1066
-
-
Bhat, P.J.1
Murthy, T.V.2
-
33
-
-
0029058555
-
Transcriptional regulation in the yeast GAL gene family: a complex genetic network
-
Lohr D, Venkov P, Zlatanova J, (1995) Transcriptional regulation in the yeast GAL gene family: a complex genetic network. FASEB J 9: 777-787.
-
(1995)
FASEB J
, vol.9
, pp. 777-787
-
-
Lohr, D.1
Venkov, P.2
Zlatanova, J.3
-
34
-
-
0023493883
-
A model fungal gene regulatory mechanism: the GAL genes of Saccharomyces cerevisiae
-
Johnston M, (1987) A model fungal gene regulatory mechanism: the GAL genes of Saccharomyces cerevisiae. Microbiol Rev 51: 458-476.
-
(1987)
Microbiol Rev
, vol.51
, pp. 458-476
-
-
Johnston, M.1
-
35
-
-
77954855829
-
Non-coding RNAs: meet thy masters
-
Costa FF, (2010) Non-coding RNAs: meet thy masters. Bioessays 32: 599-608.
-
(2010)
Bioessays
, vol.32
, pp. 599-608
-
-
Costa, F.F.1
-
36
-
-
84856794575
-
How to activate a gene: decap its associated noncoding RNA
-
Ramaiah M, Shum EY, Wilkinson MF, (2012) How to activate a gene: decap its associated noncoding RNA. Mol Cell 45: 271-273.
-
(2012)
Mol Cell
, vol.45
, pp. 271-273
-
-
Ramaiah, M.1
Shum, E.Y.2
Wilkinson, M.F.3
-
37
-
-
84864387173
-
The DEAD-box RNA helicase Dbp2 connects RNA quality control with repression of aberrant transcription
-
Cloutier SC, Ma WK, Nguyen LT, Tran EJ, (2012) The DEAD-box RNA helicase Dbp2 connects RNA quality control with repression of aberrant transcription. J Biol Chem 287: 26155-26166.
-
(2012)
J Biol Chem
, vol.287
, pp. 26155-26166
-
-
Cloutier, S.C.1
Ma, W.K.2
Nguyen, L.T.3
Tran, E.J.4
-
38
-
-
79960065233
-
XUTs are a class of Xrn1-sensitive antisense regulatory non-coding RNA in yeast
-
van Dijk EL, Chen CL, d'Aubenton-Carafa Y, Gourvennec S, Kwapisz M, et al. (2011) XUTs are a class of Xrn1-sensitive antisense regulatory non-coding RNA in yeast. Nature 475: 114-117.
-
(2011)
Nature
, vol.475
, pp. 114-117
-
-
van Dijk, E.L.1
Chen, C.L.2
d'Aubenton-Carafa, Y.3
Gourvennec, S.4
Kwapisz, M.5
-
39
-
-
0037716755
-
Independent recruitment in vivo by Gal4 of two complexes required for transcription
-
Bryant GO, Ptashne M, (2003) Independent recruitment in vivo by Gal4 of two complexes required for transcription. Mol Cell 11: 1301-1309.
-
(2003)
Mol Cell
, vol.11
, pp. 1301-1309
-
-
Bryant, G.O.1
Ptashne, M.2
-
40
-
-
0028230982
-
Multiple mechanisms provide rapid and stringent glucose repression of GAL gene expression in Saccharomyces cerevisiae
-
Johnston M, Flick JS, Pexton T, (1994) Multiple mechanisms provide rapid and stringent glucose repression of GAL gene expression in Saccharomyces cerevisiae. Mol Cell Biol 14: 3834-3841.
-
(1994)
Mol Cell Biol
, vol.14
, pp. 3834-3841
-
-
Johnston, M.1
Flick, J.S.2
Pexton, T.3
-
41
-
-
0015381694
-
Induction of galactokinase in Saccharomyces cerevisiae: kinetics of induction and glucose effects
-
Adams BG, (1972) Induction of galactokinase in Saccharomyces cerevisiae: kinetics of induction and glucose effects. J Bacteriol 111: 308-315.
-
(1972)
J Bacteriol
, vol.111
, pp. 308-315
-
-
Adams, B.G.1
-
42
-
-
0026655521
-
Isolation and characterization of RAT1: an essential gene of Saccharomyces cerevisiae required for the efficient nucleocytoplasmic trafficking of mRNA
-
Amberg DC, Goldstein AL, Cole CN, (1992) Isolation and characterization of RAT1: an essential gene of Saccharomyces cerevisiae required for the efficient nucleocytoplasmic trafficking of mRNA. Genes Dev 6: 1173-1189.
-
(1992)
Genes Dev
, vol.6
, pp. 1173-1189
-
-
Amberg, D.C.1
Goldstein, A.L.2
Cole, C.N.3
-
43
-
-
0025252545
-
Disruption of the gene XRN1, coding for a 5′-3′ exoribonuclease, restricts yeast cell growth
-
Larimer FW, Stevens A, (1990) Disruption of the gene XRN1, coding for a 5′-3′ exoribonuclease, restricts yeast cell growth. Gene 95: 85-90.
-
(1990)
Gene
, vol.95
, pp. 85-90
-
-
Larimer, F.W.1
Stevens, A.2
-
44
-
-
68949172267
-
Robust heat shock induces eIF2alpha-phosphorylation-independent assembly of stress granules containing eIF3 and 40S ribosomal subunits in budding yeast, Saccharomyces cerevisiae
-
Grousl T, Ivanov P, Frydlova I, Vasicova P, Janda F, et al. (2009) Robust heat shock induces eIF2alpha-phosphorylation-independent assembly of stress granules containing eIF3 and 40S ribosomal subunits in budding yeast, Saccharomyces cerevisiae. J Cell Sci 122: 2078-2088.
-
(2009)
J Cell Sci
, vol.122
, pp. 2078-2088
-
-
Grousl, T.1
Ivanov, P.2
Frydlova, I.3
Vasicova, P.4
Janda, F.5
-
45
-
-
84878270249
-
Gene expression is circular: factors for mRNA degradation also foster mRNA synthesis
-
Haimovich G, Medina DA, Causse SZ, Garber M, Millan-Zambrano G, et al. (2013) Gene expression is circular: factors for mRNA degradation also foster mRNA synthesis. Cell 153: 1000-1011.
-
(2013)
Cell
, vol.153
, pp. 1000-1011
-
-
Haimovich, G.1
Medina, D.A.2
Causse, S.Z.3
Garber, M.4
Millan-Zambrano, G.5
-
46
-
-
2442486948
-
The Snf1 kinase controls glucose repression in yeast by modulating interactions between the Mig1 repressor and the Cyc8-Tup1 co-repressor
-
Papamichos-Chronakis M, Gligoris T, Tzamarias D, (2004) The Snf1 kinase controls glucose repression in yeast by modulating interactions between the Mig1 repressor and the Cyc8-Tup1 co-repressor. EMBO Rep 5: 368-372.
-
(2004)
EMBO Rep
, vol.5
, pp. 368-372
-
-
Papamichos-Chronakis, M.1
Gligoris, T.2
Tzamarias, D.3
-
47
-
-
18744388375
-
NRG1 is required for glucose repression of the SUC2 and GAL genes of Saccharomyces cerevisiae
-
Zhou H, Winston F, (2001) NRG1 is required for glucose repression of the SUC2 and GAL genes of Saccharomyces cerevisiae. BMC Genetics 2: 5.
-
(2001)
BMC Genetics
, vol.2
, pp. 5
-
-
Zhou, H.1
Winston, F.2
-
48
-
-
0026512705
-
Glucose repression in the yeast Saccharomyces cerevisiae
-
Trumbly RJ, (1992) Glucose repression in the yeast Saccharomyces cerevisiae. Mol Microbiol 6: 15-21.
-
(1992)
Mol Microbiol
, vol.6
, pp. 15-21
-
-
Trumbly, R.J.1
-
49
-
-
0029780704
-
Gene activation by recruitment of the RNA polymerase II holoenzyme
-
Farrell S, Simkovich N, Wu Y, Barberis A, Ptashne M, (1996) Gene activation by recruitment of the RNA polymerase II holoenzyme. Genes Dev 10: 2359-2367.
-
(1996)
Genes Dev
, vol.10
, pp. 2359-2367
-
-
Farrell, S.1
Simkovich, N.2
Wu, Y.3
Barberis, A.4
Ptashne, M.5
-
50
-
-
0030729488
-
The cysteine-peptidase bleomycin hydrolase is a member of the galactose regulon in yeast
-
Zheng W, Xu HE, Johnston SA, (1997) The cysteine-peptidase bleomycin hydrolase is a member of the galactose regulon in yeast. J Biol Chem 272: 30350-30355.
-
(1997)
J Biol Chem
, vol.272
, pp. 30350-30355
-
-
Zheng, W.1
Xu, H.E.2
Johnston, S.A.3
-
51
-
-
0031761689
-
Characterization of three related glucose repressors and genes they regulate in Saccharomyces cerevisiae
-
Lutfiyya LL, Iyer VR, DeRisi J, DeVit MJ, Brown PO, et al. (1998) Characterization of three related glucose repressors and genes they regulate in Saccharomyces cerevisiae. Genetics 150: 1377-1391.
-
(1998)
Genetics
, vol.150
, pp. 1377-1391
-
-
Lutfiyya, L.L.1
Iyer, V.R.2
DeRisi, J.3
DeVit, M.J.4
Brown, P.O.5
-
52
-
-
82955217673
-
The Cyc8-Tup1 complex inhibits transcription primarily by masking the activation domain of the recruiting protein
-
Wong KH, Struhl K, (2011) The Cyc8-Tup1 complex inhibits transcription primarily by masking the activation domain of the recruiting protein. Genes Dev 25: 2525-2539.
-
(2011)
Genes Dev
, vol.25
, pp. 2525-2539
-
-
Wong, K.H.1
Struhl, K.2
-
53
-
-
0034142029
-
The organized chromatin domain of the repressed yeast a cell-specific gene STE6 contains two molecules of the corepressor Tup1p per nucleosome
-
Ducker CE, Simpson RT, (2000) The organized chromatin domain of the repressed yeast a cell-specific gene STE6 contains two molecules of the corepressor Tup1p per nucleosome. EMBO J 19: 400-409.
-
(2000)
EMBO J
, vol.19
, pp. 400-409
-
-
Ducker, C.E.1
Simpson, R.T.2
-
54
-
-
0028080154
-
A dynamic approach to predicting bacterial growth in food
-
Baranyi J, Roberts TA, (1994) A dynamic approach to predicting bacterial growth in food. Int J Food Microbiol 23: 277-294.
-
(1994)
Int J Food Microbiol
, vol.23
, pp. 277-294
-
-
Baranyi, J.1
Roberts, T.A.2
-
55
-
-
84885172341
-
The DEAD-box protein Dbp2 functions with the RNA-binding protein Yra1 to promote mRNP assembly
-
doi: 10.1016/j.jmb.2013.1005.1016. [Epub ahead of print]
-
Ma WK, Cloutier SC, Tran EJ, (2013) The DEAD-box protein Dbp2 functions with the RNA-binding protein Yra1 to promote mRNP assembly. J Mol Biol doi:[]10.1016/j.jmb.2013.1005.1016. [Epub ahead of print].
-
(2013)
J Mol Biol
-
-
Ma, W.K.1
Cloutier, S.C.2
Tran, E.J.3
-
56
-
-
81255176758
-
Rapid GAL gene switch of Saccharomyces cerevisiae depends on nuclear Gal3, not nucleocytoplasmic trafficking of Gal3 and Gal80
-
Egriboz O, Jiang F, Hopper JE, (2011) Rapid GAL gene switch of Saccharomyces cerevisiae depends on nuclear Gal3, not nucleocytoplasmic trafficking of Gal3 and Gal80. Genetics 189: 825-836.
-
(2011)
Genetics
, vol.189
, pp. 825-836
-
-
Egriboz, O.1
Jiang, F.2
Hopper, J.E.3
-
57
-
-
84880421665
-
ATP-dependent roX RNA remodeling by the helicase maleless enables specific association of MSL proteins
-
Maenner S, Muller M, Frohlich J, Langer D, Becker PB, (2013) ATP-dependent roX RNA remodeling by the helicase maleless enables specific association of MSL proteins. Mol Cell 51: 174-184.
-
(2013)
Mol Cell
, vol.51
, pp. 174-184
-
-
Maenner, S.1
Muller, M.2
Frohlich, J.3
Langer, D.4
Becker, P.B.5
-
58
-
-
78650967225
-
Transcription of functionally related constitutive genes is not coordinated
-
Gandhi SJ, Zenklusen D, Lionnet T, Singer RH, (2011) Transcription of functionally related constitutive genes is not coordinated. Nat Struct Mol Biol 18: 27-34.
-
(2011)
Nat Struct Mol Biol
, vol.18
, pp. 27-34
-
-
Gandhi, S.J.1
Zenklusen, D.2
Lionnet, T.3
Singer, R.H.4
-
59
-
-
84880177044
-
Bimodal expression of PHO84 is modulated by early termination of antisense transcription
-
Castelnuovo M, Rahman S, Guffanti E, Infantino V, Stutz F, et al. (2013) Bimodal expression of PHO84 is modulated by early termination of antisense transcription. Nat Struct Mol Biol 20: 851-858.
-
(2013)
Nat Struct Mol Biol
, vol.20
, pp. 851-858
-
-
Castelnuovo, M.1
Rahman, S.2
Guffanti, E.3
Infantino, V.4
Stutz, F.5
-
60
-
-
84866392310
-
Set3 HDAC mediates effects of overlapping noncoding transcription on gene induction kinetics
-
Kim T, Xu Z, Clauder-Munster S, Steinmetz LM, Buratowski S, (2012) Set3 HDAC mediates effects of overlapping noncoding transcription on gene induction kinetics. Cell 150: 1158-1169.
-
(2012)
Cell
, vol.150
, pp. 1158-1169
-
-
Kim, T.1
Xu, Z.2
Clauder-Munster, S.3
Steinmetz, L.M.4
Buratowski, S.5
-
61
-
-
79959345878
-
Human senataxin resolves RNA/DNA hybrids formed at transcriptional pause sites to promote Xrn2-dependent termination
-
Skourti-Stathaki K, Proudfoot NJ, Gromak N, (2011) Human senataxin resolves RNA/DNA hybrids formed at transcriptional pause sites to promote Xrn2-dependent termination. Mol Cell 42: 794-805.
-
(2011)
Mol Cell
, vol.42
, pp. 794-805
-
-
Skourti-Stathaki, K.1
Proudfoot, N.J.2
Gromak, N.3
-
62
-
-
84856253456
-
R-loop-mediated genome instability in mRNA cleavage and polyadenylation mutants
-
Stirling PC, Chan YA, Minaker SW, Aristizabal MJ, Barrett I, et al. (2012) R-loop-mediated genome instability in mRNA cleavage and polyadenylation mutants. Genes Dev 26: 163-175.
-
(2012)
Genes Dev
, vol.26
, pp. 163-175
-
-
Stirling, P.C.1
Chan, Y.A.2
Minaker, S.W.3
Aristizabal, M.J.4
Barrett, I.5
-
63
-
-
84860338675
-
R loops: from transcription byproducts to threats to genome stability
-
Aguilera A, Garcia-Muse T, (2012) R loops: from transcription byproducts to threats to genome stability. Mol Cell 46: 115-124.
-
(2012)
Mol Cell
, vol.46
, pp. 115-124
-
-
Aguilera, A.1
Garcia-Muse, T.2
-
64
-
-
84877354511
-
R-loop stabilization represses antisense transcription at the Arabidopsis FLC locus
-
Sun Q, Csorba T, Skourti-Stathaki K, Proudfoot NJ, Dean C, (2013) R-loop stabilization represses antisense transcription at the Arabidopsis FLC locus. Science 340: 619-621.
-
(2013)
Science
, vol.340
, pp. 619-621
-
-
Sun, Q.1
Csorba, T.2
Skourti-Stathaki, K.3
Proudfoot, N.J.4
Dean, C.5
-
65
-
-
77954841539
-
Loss of topoisomerase I leads to R-loop-mediated transcriptional blocks during ribosomal RNA synthesis
-
El Hage A, French SL, Beyer AL, Tollervey D, (2010) Loss of topoisomerase I leads to R-loop-mediated transcriptional blocks during ribosomal RNA synthesis. Genes Dev 24: 1546-1558.
-
(2010)
Genes Dev
, vol.24
, pp. 1546-1558
-
-
El Hage, A.1
French, S.L.2
Beyer, A.L.3
Tollervey, D.4
-
66
-
-
0034682534
-
Balancing transcriptional interference and initiation on the GAL7 promoter of Saccharomyces cerevisiae
-
Greger IH, Aranda A, Proudfoot N, (2000) Balancing transcriptional interference and initiation on the GAL7 promoter of Saccharomyces cerevisiae. Proc Natl Acad Sci U S A 97: 8415-8420.
-
(2000)
Proc Natl Acad Sci U S A
, vol.97
, pp. 8415-8420
-
-
Greger, I.H.1
Aranda, A.2
Proudfoot, N.3
-
67
-
-
0032541403
-
Poly(A) signals control both transcriptional termination and initiation between the tandem GAL10 and GAL7 genes of Saccharomyces cerevisiae
-
Greger IH, Proudfoot NJ, (1998) Poly(A) signals control both transcriptional termination and initiation between the tandem GAL10 and GAL7 genes of Saccharomyces cerevisiae. EMBO J 17: 4771-4779.
-
(1998)
EMBO J
, vol.17
, pp. 4771-4779
-
-
Greger, I.H.1
Proudfoot, N.J.2
-
68
-
-
84883377142
-
A transcriptome-wide atlas of RNP composition reveals diverse classes of mRNAs and lncRNAs
-
Tuck AC, Tollervey D, (2013) A transcriptome-wide atlas of RNP composition reveals diverse classes of mRNAs and lncRNAs. Cell 154: 996-1009.
-
(2013)
Cell
, vol.154
, pp. 996-1009
-
-
Tuck, A.C.1
Tollervey, D.2
-
69
-
-
84864607962
-
mrhl RNA, a long noncoding RNA, negatively regulates Wnt signaling through its protein partner Ddx5/p68 in mouse spermatogonial cells
-
Arun G, Akhade VS, Donakonda S, Rao MR, (2012) mrhl RNA, a long noncoding RNA, negatively regulates Wnt signaling through its protein partner Ddx5/p68 in mouse spermatogonial cells. Mol Cell Biol 32: 3140-3152.
-
(2012)
Mol Cell Biol
, vol.32
, pp. 3140-3152
-
-
Arun, G.1
Akhade, V.S.2
Donakonda, S.3
Rao, M.R.4
-
70
-
-
33749125424
-
The RNA helicases p68/p72 and the noncoding RNA SRA are coregulators of MyoD and skeletal muscle differentiation
-
Caretti G, Schiltz RL, Dilworth FJ, Di Padova M, Zhao P, et al. (2006) The RNA helicases p68/p72 and the noncoding RNA SRA are coregulators of MyoD and skeletal muscle differentiation. Dev Cell 11: 547-560.
-
(2006)
Dev Cell
, vol.11
, pp. 547-560
-
-
Caretti, G.1
Schiltz, R.L.2
Dilworth, F.J.3
Di Padova, M.4
Zhao, P.5
-
71
-
-
0037121926
-
Human Dcp2: a catalytically active mRNA decapping enzyme located in specific cytoplasmic structures
-
van Dijk E, Cougot N, Meyer S, Babajko S, Wahle E, et al. (2002) Human Dcp2: a catalytically active mRNA decapping enzyme located in specific cytoplasmic structures. EMBO J 21: 6915-6924.
-
(2002)
EMBO J
, vol.21
, pp. 6915-6924
-
-
van Dijk, E.1
Cougot, N.2
Meyer, S.3
Babajko, S.4
Wahle, E.5
-
72
-
-
0037968357
-
Decapping and decay of messenger RNA occur in cytoplasmic processing bodies
-
Sheth U, Parker R, (2003) Decapping and decay of messenger RNA occur in cytoplasmic processing bodies. Science 300: 805-808.
-
(2003)
Science
, vol.300
, pp. 805-808
-
-
Sheth, U.1
Parker, R.2
-
73
-
-
0030764692
-
Rat1p and Xrn1p are functionally interchangeable exoribonucleases that are restricted to and required in the nucleus and cytoplasm, respectively
-
Johnson AW, (1997) Rat1p and Xrn1p are functionally interchangeable exoribonucleases that are restricted to and required in the nucleus and cytoplasm, respectively. Mol Cell Biol 17: 6122-6130.
-
(1997)
Mol Cell Biol
, vol.17
, pp. 6122-6130
-
-
Johnson, A.W.1
-
74
-
-
40349116304
-
A cryptic unstable transcript mediates transcriptional trans-silencing of the Ty1 retrotransposon in S. cerevisiae
-
Berretta J, Pinskaya M, Morillon A, (2008) A cryptic unstable transcript mediates transcriptional trans-silencing of the Ty1 retrotransposon in S. cerevisiae. Genes Dev 22: 615-626.
-
(2008)
Genes Dev
, vol.22
, pp. 615-626
-
-
Berretta, J.1
Pinskaya, M.2
Morillon, A.3
-
75
-
-
0004072425
-
-
London-New York-Sydney-Toronto: Wiley-Interscience
-
Gutfreund H (1972) Enzymes: physical principles. London-New York-Sydney-Toronto: Wiley-Interscience.
-
(1972)
Enzymes: Physical principles
-
-
Gutfreund, H.1
-
76
-
-
0030883032
-
Regulated nuclear translocation of the Mig1 glucose repressor
-
De Vit MJ, Waddle JA, Johnston M, (1997) Regulated nuclear translocation of the Mig1 glucose repressor. Mol Biol Cell 8: 1603-1618.
-
(1997)
Mol Biol Cell
, vol.8
, pp. 1603-1618
-
-
De Vit, M.J.1
Waddle, J.A.2
Johnston, M.3
-
77
-
-
0027411327
-
Synergism in transcriptional activation: a kinetic view
-
Herschlag D, Johnson FB, (1993) Synergism in transcriptional activation: a kinetic view. Genes Dev 7: 173-179.
-
(1993)
Genes Dev
, vol.7
, pp. 173-179
-
-
Herschlag, D.1
Johnson, F.B.2
-
78
-
-
0029994841
-
A new efficient gene disruption cassette for repeated use in budding yeast
-
Guldener U, Heck S, Fielder T, Beinhauer J, Hegemann JH, (1996) A new efficient gene disruption cassette for repeated use in budding yeast. Nucleic Acids Res 24: 2519-2524.
-
(1996)
Nucleic Acids Res
, vol.24
, pp. 2519-2524
-
-
Guldener, U.1
Heck, S.2
Fielder, T.3
Beinhauer, J.4
Hegemann, J.H.5
-
79
-
-
0032873415
-
Three new dominant drug resistance cassettes for gene disruption in Saccharomyces cerevisiae
-
Goldstein AL, McCusker JH, (1999) Three new dominant drug resistance cassettes for gene disruption in Saccharomyces cerevisiae. Yeast 15: 1541-1553.
-
(1999)
Yeast
, vol.15
, pp. 1541-1553
-
-
Goldstein, A.L.1
McCusker, J.H.2
-
80
-
-
0035016612
-
Interactions of Isw2 chromatin remodeling complex with nucleosomal arrays: analyses using recombinant yeast histones and immobilized templates
-
Gelbart ME, Rechsteiner T, Richmond TJ, Tsukiyama T, (2001) Interactions of Isw2 chromatin remodeling complex with nucleosomal arrays: analyses using recombinant yeast histones and immobilized templates. Mol Cell Biol 21: 2098-2106.
-
(2001)
Mol Cell Biol
, vol.21
, pp. 2098-2106
-
-
Gelbart, M.E.1
Rechsteiner, T.2
Richmond, T.J.3
Tsukiyama, T.4
|